- Tutti-commits - mailman.cloud.codelutin.com

r419 - trunk
by tchemit＠users.forge.codelutin.com Feb. 15, 2013

Feb. 15, 2013

Author: tchemit Date: 2013-02-15 11:03:34 +0100 (Fri, 15 Feb 2013) New Revision: 419 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/419 Log: use last release of adagio Modified: trunk/pom.xml Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2013-02-14 23:59:54 UTC (rev 418) +++ trunk/pom.xml 2013-02-15 10:03:34 UTC (rev 419) @@ -138,7 +138,7 @@ <slf4jVersion>1.7.2</slf4jVersion> - <adagioVersion>3.3.2-SNAPSHOT</adagioVersion> + <adagioVersion>3.3.2</adagioVersion> <msaccessImporterVersion>1.4.1</msaccessImporterVersion>

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Build failed in Jenkins: tutti #342
by admin+hudson＠codelutin.com Feb. 15, 2013

Feb. 15, 2013

See <http://ci.nuiton.org/jenkins/job/tutti/342/changes> Changes: [blavenier] Fix : - saveBatchFrequencies now delete extra batch - store weights for 'inert' and 'livingNotSorted' Add : - ReferentialPersistenceService.getSampleCategoryIds() Improve : - Merge CatchBatchPersistenceService and SpeciesBatchPersistenceService into BatchPersistenceService - batch management now use adagio implementation CatchBatchExtendDao ------------------------------------------ [...truncated 79 lines...] Downloading: http://nexus.nuiton.org/nexus/content/groups/tutti-group/fr/ifremer/adagio/… Downloading: http://nexus.nuiton.org/nexus/content/groups/public/fr/ifremer/adagio/adagi… Downloaded: http://nexus.nuiton.org/nexus/content/groups/tutti-group/fr/ifremer/adagio/… (602 B at 5.5 KB/sec) mojoStarted org.apache.maven.plugins:maven-clean-plugin:2.5(default-clean) [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ tutti-persistence --- [INFO] Deleting <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/target> mojoSucceeded org.apache.maven.plugins:maven-clean-plugin:2.5(default-clean) mojoStarted org.apache.maven.plugins:maven-enforcer-plugin:1.2(check-project-files) [INFO] [INFO] --- maven-enforcer-plugin:1.2:enforce (check-project-files) @ tutti-persistence --- mojoSucceeded org.apache.maven.plugins:maven-enforcer-plugin:1.2(check-project-files) mojoStarted org.nuiton.eugene:eugene-maven-plugin:2.6.1(default) [INFO] [INFO] --- eugene-maven-plugin:2.6.1:generate (default) @ tutti-persistence --- [INFO] Process phase [zargo] for one entry. [INFO] Expanding 1 xmi file(s) from <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…> [INFO] Will generate <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/target/ge…> [INFO] Copy file <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…> to <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/target/ge…> [INFO] Generate one file in 75.758ms. [INFO] Process phase [xmi] for one entry. [INFO] Processing XSL tranformation on <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/target/ge…> for 1 file(s). [INFO] Will generate <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/target/ge…> [INFO] Copy file <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/target/ge…> to <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/target/ge…> [INFO] Generate one file in 2.249s. [INFO] Process phase [model] for one entry. INFO [pool-1-thread-1] (ObjectModelReader.java:273) loadModelProperties - 19 tag values were succesfull imported from <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/target/ge…> [INFO] Apply generator JavaInterfaceTransformer [INFO] Apply generator SimpleJavaBeanTransformer INFO [pool-1-thread-1] (ObjectModelTransformerToJava.java:911) isInClassPath - Will not generate [fr.ifremer.tutti.persistence.entities.data.Program], already found in class-path. [INFO] Apply generator JavaEnumerationTransformer mojoSucceeded org.nuiton.eugene:eugene-maven-plugin:2.6.1(default)[INFO] No file generated. [INFO] Add compile source root : <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/target/ge…> [INFO] Add resource root :Resource {targetPath: null, filtering: false, FileSet {directory: <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/target/ge…,> PatternSet [includes: {}, excludes: {**/*.java}]}} mojoStarted org.nuiton.i18n:i18n-maven-plugin:2.5(scan-sources) [INFO] [INFO] --- i18n-maven-plugin:2.5:parserJava (scan-sources) @ tutti-persistence --- mojoSucceeded org.nuiton.i18n:i18n-maven-plugin:2.5(scan-sources) forkedProjectStarted fr.ifremer.tutti:tutti-persistence:1.0-SNAPSHOT mojoStarted org.nuiton.i18n:i18n-maven-plugin:2.5(get) [INFO] [INFO] --- i18n-maven-plugin:2.5:get (get) @ tutti-persistence --- [INFO] Copying tutti-persistence.properties to <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/target/ge…> mojoSucceeded org.nuiton.i18n:i18n-maven-plugin:2.5(get) forkedProjectSucceeded fr.ifremer.tutti:tutti-persistence:1.0-SNAPSHOT mojoStarted org.nuiton.i18n:i18n-maven-plugin:2.5(scan-sources) [INFO] [INFO] --- i18n-maven-plugin:2.5:gen (scan-sources) @ tutti-persistence --- [WARNING] bundle fr_FR contains 3/21 empty entries! (use -Di18n.showEmpty to see these entries) mojoSucceeded org.nuiton.i18n:i18n-maven-plugin:2.5(scan-sources) mojoStarted org.apache.maven.plugins:maven-resources-plugin:2.6(default-resources) [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ tutti-persistence --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 11 resources [INFO] Copying 0 resource mojoSucceeded org.apache.maven.plugins:maven-resources-plugin:2.6(default-resources) mojoStarted org.apache.maven.plugins:maven-compiler-plugin:2.5.1(default-compile) [INFO] [INFO] --- maven-compiler-plugin:2.5.1:compile (default-compile) @ tutti-persistence --- [INFO] Compiling 82 source files to <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/target/cl…> [INFO] ------------------------------------------------------------- [ERROR] COMPILATION ERROR : [INFO] ------------------------------------------------------------- [ERROR] bootstrap class path not set in conjunction with -source 1.6 <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[32,44] error: cannot find symbol [ERROR] symbol: class CatchBatchExtendDao location: package fr.ifremer.adagio.core.dao.data.batch <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[36,54] error: package fr.ifremer.adagio.core.dao.data.batch.validator does not exist [ERROR] <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[37,54] error: package fr.ifremer.adagio.core.dao.data.batch.validator does not exist [ERROR] <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[38,54] error: package fr.ifremer.adagio.core.dao.data.batch.validator does not exist [ERROR] <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[58,72] error: cannot find symbol [ERROR] symbol: class CatchBatchValidator <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[75,11] error: cannot find symbol [ERROR] symbol: class CatchBatchExtendDao location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[99,13] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[536,56] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[212,24] error: cannot find symbol [ERROR] symbol: method getInheritedSortingMeasurements() location: variable sortingBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[214,20] error: cannot find symbol [ERROR] symbol: method getInheritedSortingMeasurements() location: variable sortingBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[92,1] error: method does not override or implement a method from a supertype [ERROR] <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[100,7] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[98,1] error: method does not override or implement a method from a supertype [ERROR] <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[114,11] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationException location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[120,35] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable source of type CatchBatch <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[125,53] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable vracBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[126,50] error: cannot find symbol [ERROR] symbol: method getWeightBeforeSampling() location: variable vracBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[132,56] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable speciesBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[133,50] error: cannot find symbol [ERROR] symbol: method getWeightBeforeSampling() location: variable speciesBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[139,48] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable inertBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[144,72] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable livingNotItemizedBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[153,50] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable horsVracBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[159,52] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable speciesBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[167,50] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable unsortedBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[270,12] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable source of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[270,42] error: cannot find symbol [ERROR] symbol: method getWeightBeforeSampling() location: variable source of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[271,40] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable source of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[274,26] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable source of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[275,40] error: cannot find symbol [ERROR] symbol: method getWeightBeforeSampling() location: variable source of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[297,35] error: cannot find symbol [ERROR] symbol: method getInheritedReferenceTaxonId() location: variable source of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[432,25] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable source of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[567,6] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[567,44] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[570,7] error: cannot find symbol [ERROR] symbol: variable CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[576,7] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[576,45] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[580,9] error: cannot find symbol [ERROR] symbol: variable CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[588,4] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[588,42] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[592,6] error: cannot find symbol [ERROR] symbol: variable CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[597,4] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[597,42] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/src/main/…>:[600,6] error: cannot find symbol [INFO] 43 errors [INFO] ------------------------------------------------------------- mojoFailed org.apache.maven.plugins:maven-compiler-plugin:2.5.1(default-compile) projectFailed fr.ifremer.tutti:tutti-persistence:1.0-SNAPSHOT sessionEnded [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Tutti ............................................. SUCCESS [6.165s] [INFO] Tutti :: Persistence .............................. FAILURE [13.074s] [INFO] Tutti :: Service .................................. SKIPPED [INFO] Tutti :: UI ....................................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 20.741s [INFO] Finished at: Thu Feb 14 16:37:41 CET 2013 [INFO] Final Memory: 28M/116M [INFO] ------------------------------------------------------------------------ Projects to build: [MavenProject: fr.ifremer:tutti:1.0-SNAPSHOT @ <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/pom.xml,> MavenProject: fr.ifremer.tutti:tutti-persistence:1.0-SNAPSHOT @ <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/pom.xml,> MavenProject: fr.ifremer.tutti:tutti-service:1.0-SNAPSHOT @ <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-service/pom.xml,> MavenProject: fr.ifremer.tutti:tutti-ui-swing:1.0-SNAPSHOT @ <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-ui-swing/pom.xml]> [JENKINS] Archiving <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-service/pom.xml> to /var/local/jenkins/data/jobs/tutti/modules/fr.ifremer.tutti$tutti-service/builds/2013-02-14_16-37-16/archive/fr.ifremer.tutti/tutti-service/1.0-SNAPSHOT/tutti-service-1.0-SNAPSHOT.pom [JENKINS] Archiving <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-ui-swing/pom.xml> to /var/local/jenkins/data/jobs/tutti/modules/fr.ifremer.tutti$tutti-ui-swing/builds/2013-02-14_16-37-16/archive/fr.ifremer.tutti/tutti-ui-swing/1.0-SNAPSHOT/tutti-ui-swing-1.0-SNAPSHOT.pom [JENKINS] Archiving <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/pom.xml> to /var/local/jenkins/data/jobs/tutti/modules/fr.ifremer$tutti/builds/2013-02-14_16-37-16/archive/fr.ifremer/tutti/1.0-SNAPSHOT/tutti-1.0-SNAPSHOT.pom [JENKINS] Archiving <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/target/tutti-1.0-SNAPSHOT-s…> to /var/local/jenkins/data/jobs/tutti/modules/fr.ifremer$tutti/builds/2013-02-14_16-37-16/archive/fr.ifremer/tutti/1.0-SNAPSHOT/tutti-1.0-SNAPSHOT-site_fr.xml [JENKINS] Archiving <http://ci.nuiton.org/jenkins/job/tutti/ws/trunk/tutti-persistence/pom.xml> to /var/local/jenkins/data/jobs/tutti/modules/fr.ifremer.tutti$tutti-persistence/builds/2013-02-14_16-37-16/archive/fr.ifremer.tutti/tutti-persistence/1.0-SNAPSHOT/tutti-persistence-1.0-SNAPSHOT.pom Waiting for Jenkins to finish collecting data mavenExecutionResult exceptions not empty message : Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.5.1:compile (default-compile) on project tutti-persistence: Compilation failure cause : Compilation failure Stack trace : org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.5.1:compile (default-compile) on project tutti-persistence: Compilation failure at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:213) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:320) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:601) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158) at hudson.maven.Maven3Builder.call(Maven3Builder.java:98) at hudson.maven.Maven3Builder.call(Maven3Builder.java:64) at hudson.remoting.UserRequest.perform(UserRequest.java:118) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:326) at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:72) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334) at java.util.concurrent.FutureTask.run(FutureTask.java:166) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603) at java.lang.Thread.run(Thread.java:722) Caused by: org.apache.maven.plugin.CompilationFailureException: Compilation failure at org.apache.maven.plugin.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:729) at org.apache.maven.plugin.CompilerMojo.execute(CompilerMojo.java:128) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Sending e-mails to: tutti-commits(a)list.forge.codelutin.com blavenier(a)codelutin.com channel stopped

1 1

Build failed in Jenkins: tutti » Tutti :: Persistence #342
by admin+hudson＠codelutin.com Feb. 15, 2013

Feb. 15, 2013

See <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/3…> Changes: [blavenier] Fix : - saveBatchFrequencies now delete extra batch - store weights for 'inert' and 'livingNotSorted' Add : - ReferentialPersistenceService.getSampleCategoryIds() Improve : - Merge CatchBatchPersistenceService and SpeciesBatchPersistenceService into BatchPersistenceService - batch management now use adagio implementation CatchBatchExtendDao ------------------------------------------ projectStarted fr.ifremer.tutti:tutti-persistence:1.0-SNAPSHOT [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Tutti :: Persistence 1.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ Downloading: http://nexus.nuiton.org/nexus/content/groups/public/fr/ifremer/adagio/adagi… Downloading: http://nexus.nuiton.org/nexus/content/groups/tutti-group/fr/ifremer/adagio/… Downloaded: http://nexus.nuiton.org/nexus/content/groups/tutti-group/fr/ifremer/adagio/… (2 KB at 4.5 KB/sec) Downloading: http://nexus.nuiton.org/nexus/content/groups/tutti-group/fr/ifremer/adagio/… Downloading: http://nexus.nuiton.org/nexus/content/groups/public/fr/ifremer/adagio/adagi… Downloaded: http://nexus.nuiton.org/nexus/content/groups/tutti-group/fr/ifremer/adagio/… (602 B at 5.5 KB/sec) mojoStarted org.apache.maven.plugins:maven-clean-plugin:2.5(default-clean) [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ tutti-persistence --- [INFO] Deleting <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…> mojoSucceeded org.apache.maven.plugins:maven-clean-plugin:2.5(default-clean) mojoStarted org.apache.maven.plugins:maven-enforcer-plugin:1.2(check-project-files) [INFO] [INFO] --- maven-enforcer-plugin:1.2:enforce (check-project-files) @ tutti-persistence --- mojoSucceeded org.apache.maven.plugins:maven-enforcer-plugin:1.2(check-project-files) mojoStarted org.nuiton.eugene:eugene-maven-plugin:2.6.1(default) [INFO] [INFO] --- eugene-maven-plugin:2.6.1:generate (default) @ tutti-persistence --- [INFO] Process phase [zargo] for one entry. [INFO] Expanding 1 xmi file(s) from <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…> [INFO] Will generate <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…> [INFO] Copy file <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…> to <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…> [INFO] Generate one file in 75.758ms. [INFO] Process phase [xmi] for one entry. [INFO] Processing XSL tranformation on <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…> for 1 file(s). [INFO] Will generate <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…> [INFO] Copy file <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…> to <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…> [INFO] Generate one file in 2.249s. [INFO] Process phase [model] for one entry. INFO [pool-1-thread-1] (ObjectModelReader.java:273) loadModelProperties - 19 tag values were succesfull imported from <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…> [INFO] Apply generator JavaInterfaceTransformer [INFO] Apply generator SimpleJavaBeanTransformer INFO [pool-1-thread-1] (ObjectModelTransformerToJava.java:911) isInClassPath - Will not generate [fr.ifremer.tutti.persistence.entities.data.Program], already found in class-path. [INFO] Apply generator JavaEnumerationTransformer mojoSucceeded org.nuiton.eugene:eugene-maven-plugin:2.6.1(default)[INFO] No file generated. [INFO] Add compile source root : <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…> [INFO] Add resource root :Resource {targetPath: null, filtering: false, FileSet {directory: <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…,> PatternSet [includes: {}, excludes: {**/*.java}]}} mojoStarted org.nuiton.i18n:i18n-maven-plugin:2.5(scan-sources) [INFO] [INFO] --- i18n-maven-plugin:2.5:parserJava (scan-sources) @ tutti-persistence --- mojoSucceeded org.nuiton.i18n:i18n-maven-plugin:2.5(scan-sources) forkedProjectStarted fr.ifremer.tutti:tutti-persistence:1.0-SNAPSHOT mojoStarted org.nuiton.i18n:i18n-maven-plugin:2.5(get) [INFO] [INFO] --- i18n-maven-plugin:2.5:get (get) @ tutti-persistence --- [INFO] Copying tutti-persistence.properties to <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…> mojoSucceeded org.nuiton.i18n:i18n-maven-plugin:2.5(get) forkedProjectSucceeded fr.ifremer.tutti:tutti-persistence:1.0-SNAPSHOT mojoStarted org.nuiton.i18n:i18n-maven-plugin:2.5(scan-sources) [INFO] [INFO] --- i18n-maven-plugin:2.5:gen (scan-sources) @ tutti-persistence --- [WARNING] bundle fr_FR contains 3/21 empty entries! (use -Di18n.showEmpty to see these entries) mojoSucceeded org.nuiton.i18n:i18n-maven-plugin:2.5(scan-sources) mojoStarted org.apache.maven.plugins:maven-resources-plugin:2.6(default-resources) [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ tutti-persistence --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 11 resources [INFO] Copying 0 resource mojoSucceeded org.apache.maven.plugins:maven-resources-plugin:2.6(default-resources) mojoStarted org.apache.maven.plugins:maven-compiler-plugin:2.5.1(default-compile) [INFO] [INFO] --- maven-compiler-plugin:2.5.1:compile (default-compile) @ tutti-persistence --- [INFO] Compiling 82 source files to <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…> [INFO] ------------------------------------------------------------- [ERROR] COMPILATION ERROR : [INFO] ------------------------------------------------------------- [ERROR] bootstrap class path not set in conjunction with -source 1.6 <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[32,44] error: cannot find symbol [ERROR] symbol: class CatchBatchExtendDao location: package fr.ifremer.adagio.core.dao.data.batch <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[36,54] error: package fr.ifremer.adagio.core.dao.data.batch.validator does not exist [ERROR] <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[37,54] error: package fr.ifremer.adagio.core.dao.data.batch.validator does not exist [ERROR] <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[38,54] error: package fr.ifremer.adagio.core.dao.data.batch.validator does not exist [ERROR] <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[58,72] error: cannot find symbol [ERROR] symbol: class CatchBatchValidator <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[75,11] error: cannot find symbol [ERROR] symbol: class CatchBatchExtendDao location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[99,13] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[536,56] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[212,24] error: cannot find symbol [ERROR] symbol: method getInheritedSortingMeasurements() location: variable sortingBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[214,20] error: cannot find symbol [ERROR] symbol: method getInheritedSortingMeasurements() location: variable sortingBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[92,1] error: method does not override or implement a method from a supertype [ERROR] <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[100,7] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[98,1] error: method does not override or implement a method from a supertype [ERROR] <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[114,11] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationException location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[120,35] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable source of type CatchBatch <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[125,53] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable vracBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[126,50] error: cannot find symbol [ERROR] symbol: method getWeightBeforeSampling() location: variable vracBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[132,56] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable speciesBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[133,50] error: cannot find symbol [ERROR] symbol: method getWeightBeforeSampling() location: variable speciesBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[139,48] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable inertBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[144,72] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable livingNotItemizedBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[153,50] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable horsVracBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[159,52] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable speciesBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[167,50] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable unsortedBatch of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[270,12] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable source of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[270,42] error: cannot find symbol [ERROR] symbol: method getWeightBeforeSampling() location: variable source of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[271,40] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable source of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[274,26] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable source of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[275,40] error: cannot find symbol [ERROR] symbol: method getWeightBeforeSampling() location: variable source of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[297,35] error: cannot find symbol [ERROR] symbol: method getInheritedReferenceTaxonId() location: variable source of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[432,25] error: cannot find symbol [ERROR] symbol: method getWeight() location: variable source of type SortingBatch <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[567,6] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[567,44] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[570,7] error: cannot find symbol [ERROR] symbol: variable CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[576,7] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[576,45] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[580,9] error: cannot find symbol [ERROR] symbol: variable CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[588,4] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[588,42] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[592,6] error: cannot find symbol [ERROR] symbol: variable CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[597,4] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[597,42] error: cannot find symbol [ERROR] symbol: class CatchBatchValidationError location: class BatchPersistenceServiceImpl <http://ci.nuiton.org/jenkins/job/tutti/fr.ifremer.tutti$tutti-persistence/w…>:[600,6] error: cannot find symbol [INFO] 43 errors [INFO] ------------------------------------------------------------- mojoFailed org.apache.maven.plugins:maven-compiler-plugin:2.5.1(default-compile) projectFailed fr.ifremer.tutti:tutti-persistence:1.0-SNAPSHOT

1 1

r418 - in trunk/tutti-ui-swing/src/main: java/fr/ifremer/tutti/ui/swing java/fr/ifremer/tutti/ui/swing/content/operation java/fr/ifremer/tutti/ui/swing/content/operation/catches java/fr/ifremer/tutti/ui/swing/util/editor resources/i18n
by tchemit＠users.forge.codelutin.com Feb. 14, 2013

Feb. 14, 2013

Author: tchemit Date: 2013-02-15 00:59:54 +0100 (Fri, 15 Feb 2013) New Revision: 418 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/418 Log: - fix new fishing operation (when need to save previous fishing operation) - begin to integrate synchro db - improve update ui - add missing svn properties and license headers - continue action api - fix exceptionHandler when action is running Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/AbstractTuttiAction.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/MainUIHandler.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiApplicationUpdaterCallBack.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiExceptionHandler.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiUIContext.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/UpdateApplicationAction.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/UpdateReferentialAction.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/EditFishingOperationAction.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/NewFishingOperationAction.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ComputeWeightsAction.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/editor/TuttiComputedOrNotDataEditor.java trunk/tutti-ui-swing/src/main/resources/i18n/tutti-ui-swing_fr_FR.properties Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/AbstractTuttiAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/AbstractTuttiAction.java 2013-02-14 23:55:47 UTC (rev 417) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/AbstractTuttiAction.java 2013-02-14 23:59:54 UTC (rev 418) @@ -29,20 +29,16 @@ import fr.ifremer.tutti.service.DecoratorService; import fr.ifremer.tutti.service.TuttiService; import fr.ifremer.tutti.ui.swing.config.TuttiApplicationConfig; +import fr.ifremer.tutti.ui.swing.util.action.TuttiActionUI; +import fr.ifremer.tutti.ui.swing.util.action.TuttiActionUIModel; import jaxx.runtime.SwingUtil; +import org.apache.commons.lang.ObjectUtils; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; import org.jdesktop.beans.AbstractBean; import org.nuiton.util.decorator.Decorator; import javax.swing.AbstractAction; -import javax.swing.JDialog; -import javax.swing.JLabel; -import javax.swing.JPanel; -import javax.swing.JProgressBar; -import javax.swing.border.EmptyBorder; -import javax.swing.border.TitledBorder; -import java.awt.BorderLayout; import java.awt.event.ActionEvent; import java.util.Set; import java.util.Timer; @@ -50,8 +46,6 @@ import java.util.concurrent.ExecutorService; import java.util.concurrent.Executors; -import static org.nuiton.i18n.I18n._; - /** * TODO * @@ -72,6 +66,8 @@ private final H handler; + private boolean failed; + private final boolean hideBody; private final static Object lock = new Object(); @@ -84,6 +80,7 @@ String text, String tip, boolean hideBody) { + this.handler = handler; this.hideBody = hideBody; putValue(SMALL_ICON, SwingUtil.createActionIcon(icon)); @@ -101,7 +98,7 @@ return (String) getValue("actionName"); } - protected String getActionDescription() { + public String getActionDescription() { return (String) getValue("actionDescription"); } @@ -116,6 +113,14 @@ putValue("actionDescription", null); } + public boolean isFailed() { + return failed; + } + + public void setFailed(boolean failed) { + this.failed = failed; + } + @Override public final void actionPerformed(final ActionEvent event) { @@ -123,6 +128,8 @@ log.info("Task [" + this + "] starting"); } + setFailed(false); + boolean doAction = prepareAction(event); if (doAction) { @@ -132,6 +139,7 @@ synchronized (lock) { useTimer = actions.isEmpty(); + mainAction = AbstractTuttiAction.this; actions.add(AbstractTuttiAction.this); } @@ -165,17 +173,19 @@ timer = new ActionTimerTask(this); - t.schedule(timer, 500); + t.schedule(timer, 1000); } try { this.doAction(event); } catch (Throwable e) { + setFailed(true); + if (log.isErrorEnabled()) { log.error("Task [" + this + "] error: " + e.getMessage(), e); } - throw new TuttiExceptionHandler.TuttiActionException(e); + throw new TuttiExceptionHandler.TuttiActionException(this, e); } finally { if (log.isInfoEnabled()) { log.info("Task [" + this + "] done"); @@ -190,7 +200,21 @@ } finally { synchronized (lock) { + + TuttiActionUI actionUI = AbstractTuttiAction.this.getContext().getActionUI(); + + TuttiActionUIModel actionUIModel = actionUI.getModel(); + + if (ObjectUtils.equals(AbstractTuttiAction.this, actionUIModel.getAction())) { + + // same action, then remove it (will close dialog as a side effect) + actionUIModel.clear(); + } actions.remove(AbstractTuttiAction.this); + + if (AbstractTuttiAction.this.equals(getMainAction())) { + mainAction = null; + } } } } @@ -226,21 +250,25 @@ private final static Set<Object> actions = Sets.newHashSet(); + private static AbstractTuttiAction mainAction; + + public static AbstractTuttiAction getMainAction() { + return mainAction; + } + protected static class ActionTimerTask<A extends AbstractTuttiAction> extends TimerTask { private final Object lock = new Object(); protected boolean canceled; - private final String actionDescription; + private final A action; - private JDialog d; + protected TuttiActionUI actionUI; - private final A action; - public ActionTimerTask(A action) { this.action = action; - this.actionDescription = action.getActionDescription(); + this.actionUI = action.getContext().getActionUI(); } @Override @@ -253,41 +281,18 @@ } } else { - MainUI ui = action.getContext().getMainUI(); - - if (log.isDebugEnabled()) { log.debug("Task [" + action + "] is started, show waiting dialog"); } - JPanel panel = new JPanel(new BorderLayout()); - panel.setBorder(new TitledBorder((String) null)); - JLabel label = new JLabel(); - EmptyBorder border = new EmptyBorder(5, 5, 5, 5); - label.setBorder(border); - label.setText(_("tutti.message.action.running", actionDescription)); - panel.add(label, BorderLayout.CENTER); - JProgressBar progressBar = new JProgressBar(); - progressBar.setBorder(border); - progressBar.setIndeterminate(true); - panel.add(progressBar, BorderLayout.SOUTH); - - - d = new JDialog(ui, true); - d.setUndecorated(true); -// d.setSize(300, 200); - d.add(panel); - d.pack(); - SwingUtil.center(ui, d); - if (log.isDebugEnabled()) { log.debug("Try to open dialog (was canceled ? " + canceled + ")"); } - if (!canceled) { + if (!canceled || !action.isFailed()) { - updateBusyState(ui, true); + updateBusyState(true); - d.setVisible(true); + actionUI.getModel().setAction(action); } } } @@ -302,17 +307,20 @@ } boolean cancel = super.cancel(); - updateBusyState(action.getContext().getMainUI(), false); + updateBusyState(false); - if (d != null) { - d.setVisible(false); + if (ObjectUtils.equals(action, actionUI.getModel().getAction())) { + + // same action, then remove it (will close dialog as a side effect) + actionUI.getModel().clear(); } return cancel; } } - protected void updateBusyState(MainUI ui, boolean busy) { + protected void updateBusyState(boolean busy) { + MainUI ui = action.getContext().getMainUI(); if (busy) { // ui bloquee if (action.isHideBody()) { Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/MainUIHandler.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/MainUIHandler.java 2013-02-14 23:55:47 UTC (rev 417) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/MainUIHandler.java 2013-02-14 23:59:54 UTC (rev 418) @@ -36,6 +36,7 @@ import fr.ifremer.tutti.ui.swing.content.program.EditProgramUI; import fr.ifremer.tutti.ui.swing.content.protocol.EditProtocolUI; import fr.ifremer.tutti.ui.swing.content.referential.ManageTemporaryReferentialUI; +import fr.ifremer.tutti.ui.swing.util.action.TuttiActionUI; import jaxx.runtime.swing.AboutPanel; import jaxx.runtime.validator.swing.SwingValidator; import org.apache.commons.logging.Log; @@ -74,6 +75,7 @@ super(context, ui); this.persistenceService = context.getService(PersistenceService.class); context.setMainUI(ui); + context.setActionUI(new TuttiActionUI(ui, context)); } protected MainUIHandler(TuttiUIContext context) { @@ -393,6 +395,11 @@ } } catch (Exception e) { + AbstractTuttiAction mainAction = AbstractTuttiAction.getMainAction(); + if (mainAction != null) { + mainAction.setFailed(true); + } + TuttiUIContext.getErrorHelper().showErrorDialog( "Could not change to screen " + screen, e); Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiApplicationUpdaterCallBack.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiApplicationUpdaterCallBack.java 2013-02-14 23:55:47 UTC (rev 417) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiApplicationUpdaterCallBack.java 2013-02-14 23:59:54 UTC (rev 418) @@ -25,7 +25,12 @@ */ import com.google.common.base.Preconditions; +import com.google.common.collect.Lists; import com.google.common.collect.Maps; +import fr.ifremer.tutti.persistence.ProgressionModel; +import fr.ifremer.tutti.persistence.service.synchro.ReferentialSynchronizeResult; +import fr.ifremer.tutti.service.referential.TuttiReferentialSynchronizeService; +import fr.ifremer.tutti.ui.swing.util.action.TuttiActionUI; import org.apache.commons.io.FileUtils; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; @@ -34,6 +39,7 @@ import java.io.File; import java.io.IOException; +import java.util.List; import java.util.Map; /** @@ -57,14 +63,17 @@ protected final TuttiUIContext context; - protected UpdateType[] types; + protected List<UpdateType> types; - public TuttiApplicationUpdaterCallBack(TuttiUIContext context) { + protected ProgressionModel progressionModel; + + public TuttiApplicationUpdaterCallBack(TuttiUIContext context, ProgressionModel progressionModel) { this.context = context; + this.progressionModel = progressionModel; } public void setTypes(UpdateType... types) { - this.types = types; + this.types = Lists.newArrayList(types); } @Override @@ -84,10 +93,43 @@ } } } + if (types.contains(UpdateType.DB)) { + + ApplicationUpdater.ApplicationInfo info = getInfo(UpdateType.DB, result); + if (info == null) { + String message = "Aucune mise à jour de base détectée."; + context.showInformationMessage(message); + } + } return result; } @Override + public void startUpdate(ApplicationUpdater.ApplicationInfo info) { + if (UpdateType.DB.name().toLowerCase().equals(info.name)) { + + if (Version.VZERO.toString().equals(info.oldVersion)) { + + progressionModel.setMessage("Téléchargement et installation de la base (version " + info.newVersion + ")"); + } else { + progressionModel.setMessage("Téléchargement et mise à jour de la base (version " + info.newVersion + ")"); + } + + } + if (UpdateType.JRE.name().toLowerCase().equals(info.name)) { + progressionModel.setMessage("Téléchargement et installation d'une nouvelle JRE (version " + info.newVersion + ")"); + } + + if (UpdateType.TUTTI.name().toLowerCase().equals(info.name)) { + progressionModel.setMessage("Téléchargement et installation d'une nouvelle version de Tutti (version " + info.newVersion + ")"); + } + + if (UpdateType.I18N.name().toLowerCase().equals(info.name)) { + progressionModel.setMessage("Téléchargement et installation d'une nouveau version I18N (version " + info.newVersion + ")"); + } + } + + @Override public void updateDone(Map<String, ApplicationUpdater.ApplicationInfo> appToUpdate, Map<String, Exception> appUpdateError) { @@ -227,17 +269,20 @@ return appUpdateError.get(type.name().toLowerCase()); } + protected File getDbDirectory(ApplicationUpdater.ApplicationInfo info) { + File[] sources = info.destDir.listFiles(); + Preconditions.checkState( + sources != null && sources.length == 1, + "Downloaded db should contains one directory at " + info.destDir); + File result = sources[0]; + return result; + } + protected void prepareFirstDatabase(ApplicationUpdater.ApplicationInfo info) { - //TODO copie base au bon endroit pour utilisation directe if (log.isInfoEnabled()) { log.info("First time database was downloaded at version: " + info.newVersion); } - - File[] sources = info.destDir.listFiles(); - Preconditions.checkState( - sources != null && sources.length == 1, - "Downloaded db should contains one directory at " + info.destDir); - File source = sources[0]; + File source = getDbDirectory(info); File target = context.getConfig().getServiceConfig().getPersistenceConfig().getDbDirectory(); if (log.isInfoEnabled()) { log.info("Copy from " + source + " to " + target); @@ -252,7 +297,6 @@ } catch (IOException e) { throw new RuntimeException("Could not delete temporary directory " + target, e); } - } protected void synchronizetDatabase(ApplicationUpdater.ApplicationInfo info) { @@ -260,5 +304,12 @@ if (log.isInfoEnabled()) { log.info(String.format("A database update was downloaded (oldVersion: %s, newVersion: %s), will launch a referential synchronize operation ", info.oldVersion, info.newVersion)); } + TuttiReferentialSynchronizeService service = context.getService(TuttiReferentialSynchronizeService.class); + ReferentialSynchronizeResult result = new ReferentialSynchronizeResult(); + File dbDirectory = getDbDirectory(info); + + TuttiActionUI actionUI = context.getActionUI(); + actionUI.getModel().setProgressionModel(result.getProgressionModel()); + service.prepare(dbDirectory, result); } } Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiExceptionHandler.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiExceptionHandler.java 2013-02-14 23:55:47 UTC (rev 417) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiExceptionHandler.java 2013-02-14 23:59:54 UTC (rev 418) @@ -48,9 +48,17 @@ private static final long serialVersionUID = 1L; - public TuttiActionException(Throwable cause) { + private final AbstractTuttiAction action; + + public TuttiActionException(AbstractTuttiAction action, + Throwable cause) { super(cause); + this.action = action; } + + public AbstractTuttiAction getAction() { + return action; + } } @Override @@ -70,16 +78,33 @@ Throwable cause = ex; + if (cause instanceof TuttiTechnicalException) { + cause = cause.getCause(); + } - if (cause instanceof TuttiTechnicalException || - cause instanceof TuttiActionException) { + boolean backToScreen = false; + + AbstractTuttiAction action = null; + if (cause instanceof TuttiActionException) { + + TuttiActionException actionException = (TuttiActionException) cause; cause = cause.getCause(); + + // close action ui + + action = actionException.getAction(); + + if (action instanceof AbstractChangeScreenAction) { + backToScreen = true; + } + action.getContext().getActionUI().getModel().setAction(null); } -// while (cause != null && !(cause instanceof TuttiTechnicalException)) { -// cause = cause.getCause(); -// } TuttiUIContext.getErrorHelper().showErrorDialog(cause.getMessage(), ex); + + if (backToScreen) { + action.getContext().setScreen(TuttiScreen.SELECT_CRUISE); + } } } Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiUIContext.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiUIContext.java 2013-02-14 23:55:47 UTC (rev 417) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiUIContext.java 2013-02-14 23:59:54 UTC (rev 418) @@ -35,6 +35,7 @@ import fr.ifremer.tutti.service.TuttiServiceContext; import fr.ifremer.tutti.ui.swing.config.TuttiApplicationConfig; import fr.ifremer.tutti.ui.swing.util.UIMessageNotifier; +import fr.ifremer.tutti.ui.swing.util.action.TuttiActionUI; import org.apache.commons.io.FileUtils; import org.apache.commons.io.IOUtils; import org.apache.commons.lang3.StringUtils; @@ -171,6 +172,8 @@ private MainUI mainUI; + private TuttiActionUI actionUI; + public static TuttiUIContext newContext(TuttiApplicationConfig config) { Preconditions.checkNotNull(config); Preconditions.checkState(applicationContext == null, @@ -192,7 +195,7 @@ this.resourceLoader = new RessourceClassLoader(Thread.currentThread().getContextClassLoader()); this.serviceContext = new TuttiServiceContext(resourceLoader, config.getServiceConfig()); this.swingSession = new SwingSession(getConfig().getUIConfigFile(), false); - this.errorHelper= new TuttiErrorHelper(this); + this.errorHelper = new TuttiErrorHelper(this); UIMessageNotifier logMessageNotifier = new UIMessageNotifier() { @Override @@ -358,6 +361,8 @@ I18n.init(new UserI18nInitializer( i18nDirectory, new DefaultI18nInitializer("tutti-i18n")), i18nLocale); + + setActionUI(new TuttiActionUI(null, this)); } public void open() { @@ -490,6 +495,16 @@ removePropertyChangeListener(listener); } setMainUI(null); + if (actionUI != null) { + + // close action ui + actionUI.getModel().setProgressionModel(null); + actionUI.getModel().setAction(null); + +// // hide it +// actionUI.setVisible(false); + } + setActionUI(null); } protected void saveContextToConfig() { @@ -525,4 +540,12 @@ public MainUI getMainUI() { return mainUI; } + + public void setActionUI(TuttiActionUI actionUI) { + this.actionUI = actionUI; + } + + public TuttiActionUI getActionUI() { + return actionUI; + } } Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/UpdateApplicationAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/UpdateApplicationAction.java 2013-02-14 23:55:47 UTC (rev 417) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/UpdateApplicationAction.java 2013-02-14 23:59:54 UTC (rev 418) @@ -24,6 +24,7 @@ * #L% */ +import fr.ifremer.tutti.persistence.ProgressionModel; import fr.ifremer.tutti.ui.swing.config.TuttiApplicationConfig; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; @@ -79,8 +80,12 @@ } ApplicationUpdater up = new ApplicationUpdater(); + ProgressionModel progressionModel = new ProgressionModel(); + getContext().getActionUI().getModel().setProgressionModel(progressionModel); + progressionModel.setMessage("Recherche de mises à jour de JRE / Tutti / I18N"); + TuttiApplicationUpdaterCallBack callback = - new TuttiApplicationUpdaterCallBack(getContext()); + new TuttiApplicationUpdaterCallBack(getContext(), progressionModel); callback.setTypes(TuttiApplicationUpdaterCallBack.UpdateType.JRE, TuttiApplicationUpdaterCallBack.UpdateType.I18N, @@ -90,6 +95,7 @@ dest, false, callback); + getContext().getActionUI().getModel().setProgressionModel(null); } } } \ No newline at end of file Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/UpdateReferentialAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/UpdateReferentialAction.java 2013-02-14 23:55:47 UTC (rev 417) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/UpdateReferentialAction.java 2013-02-14 23:59:54 UTC (rev 418) @@ -24,6 +24,7 @@ * #L% */ +import fr.ifremer.tutti.persistence.ProgressionModel; import fr.ifremer.tutti.ui.swing.config.TuttiApplicationConfig; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; @@ -70,12 +71,17 @@ ApplicationUpdater up = new ApplicationUpdater(); File dest = new File(config.getTuttiBasedir(), "NEW"); - TuttiApplicationUpdaterCallBack callback = new TuttiApplicationUpdaterCallBack(getContext()); + ProgressionModel progressionModel = new ProgressionModel(); + getContext().getActionUI().getModel().setProgressionModel(progressionModel); + progressionModel.setMessage("Recherche de mises à jour de base"); + TuttiApplicationUpdaterCallBack callback = new TuttiApplicationUpdaterCallBack(getContext(), progressionModel); callback.setTypes(TuttiApplicationUpdaterCallBack.UpdateType.DB); up.update(url, current, dest, false, callback); + + getContext().getActionUI().getModel().setProgressionModel(null); } } \ No newline at end of file Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/EditFishingOperationAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/EditFishingOperationAction.java 2013-02-14 23:55:47 UTC (rev 417) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/EditFishingOperationAction.java 2013-02-14 23:59:54 UTC (rev 418) @@ -40,6 +40,7 @@ import fr.ifremer.tutti.ui.swing.content.operation.fishing.gearshooting.GearShootingTabUI; import fr.ifremer.tutti.ui.swing.content.operation.fishing.hydrology.HydrologyTabUI; import fr.ifremer.tutti.ui.swing.util.TuttiBeanMonitor; +import jaxx.runtime.SwingUtil; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; import org.nuiton.util.decorator.Decorator; @@ -150,6 +151,15 @@ true); } + protected EditFishingOperationAction(FishingOperationsUIHandler handler, + String name, + String icon, + String text, + String tip, + boolean hideBody) { + super(handler, name,icon,text,tip,hideBody); + } + public void setFishingOperation(FishingOperation fishingOperation) { this.fishingOperation = fishingOperation; } @@ -179,7 +189,6 @@ return saveCatchBatchAction; } - @Override protected boolean prepareAction(ActionEvent event) { boolean canContinue = super.prepareAction(event); Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/NewFishingOperationAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/NewFishingOperationAction.java 2013-02-14 23:55:47 UTC (rev 417) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/NewFishingOperationAction.java 2013-02-14 23:59:54 UTC (rev 418) @@ -28,7 +28,6 @@ import fr.ifremer.tutti.persistence.entities.data.FishingOperation; import fr.ifremer.tutti.persistence.entities.referential.Gear; import fr.ifremer.tutti.persistence.entities.referential.Vessel; -import fr.ifremer.tutti.ui.swing.AbstractTuttiAction; import fr.ifremer.tutti.ui.swing.util.TuttiUIUtil; import java.awt.event.ActionEvent; @@ -42,17 +41,10 @@ * @author tchemit <chemit(a)codelutin.com> * @since 1.0 */ -public class NewFishingOperationAction extends AbstractTuttiAction<FishingOperationsUIModel, FishingOperationsUI, FishingOperationsUIHandler> { +public class NewFishingOperationAction extends EditFishingOperationAction { private static final long serialVersionUID = 1L; - /** - * Delegate action to edit new FishingOperation. - * - * @since 1.0 - */ - protected EditFishingOperationAction editFishingOperationAction; - public NewFishingOperationAction(FishingOperationsUIHandler handler) { super(handler, "newFishingOperation", @@ -101,16 +93,8 @@ newFishingOperation.setGearShootingStartDate(null); newFishingOperation.setGearShootingEndDate(null); + setFishingOperation(newFishingOperation); - getEditFishingOperationAction().setFishingOperation(newFishingOperation); - getEditFishingOperationAction().actionPerformed(event); - + super.doAction(event); } - - public EditFishingOperationAction getEditFishingOperationAction() { - if (editFishingOperationAction == null) { - editFishingOperationAction = new EditFishingOperationAction(getHandler()); - } - return editFishingOperationAction; - } } Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ComputeWeightsAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ComputeWeightsAction.java 2013-02-14 23:55:47 UTC (rev 417) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ComputeWeightsAction.java 2013-02-14 23:59:54 UTC (rev 418) @@ -1,6 +1,30 @@ package fr.ifremer.tutti.ui.swing.content.operation.catches; +/* + * #%L + * Tutti :: UI + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + import fr.ifremer.tutti.service.PersistenceService; import fr.ifremer.tutti.ui.swing.AbstractTuttiAction; import fr.ifremer.tutti.ui.swing.content.operation.catches.species.SampleCategory; Property changes on: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ComputeWeightsAction.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/editor/TuttiComputedOrNotDataEditor.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/editor/TuttiComputedOrNotDataEditor.java 2013-02-14 23:55:47 UTC (rev 417) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/editor/TuttiComputedOrNotDataEditor.java 2013-02-14 23:59:54 UTC (rev 418) @@ -1,6 +1,30 @@ package fr.ifremer.tutti.ui.swing.util.editor; +/* + * #%L + * Tutti :: UI + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + import fr.ifremer.tutti.ui.swing.util.TuttiComputedOrNotData; import java.awt.Component; import java.awt.event.FocusEvent; Property changes on: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/editor/TuttiComputedOrNotDataEditor.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Modified: trunk/tutti-ui-swing/src/main/resources/i18n/tutti-ui-swing_fr_FR.properties =================================================================== --- trunk/tutti-ui-swing/src/main/resources/i18n/tutti-ui-swing_fr_FR.properties 2013-02-14 23:55:47 UTC (rev 417) +++ trunk/tutti-ui-swing/src/main/resources/i18n/tutti-ui-swing_fr_FR.properties 2013-02-14 23:59:54 UTC (rev 418) @@ -98,6 +98,7 @@ tutti.action.newProgram.tip=Créer une nouvelle série de campagne tutti.action.newProtocol=Nouveau tutti.action.newProtocol.tip=Créer un nouveau protocole +tutti.action.ok=Fermer tutti.action.reload.actions=Recharger les actions tutti.action.reload.application=Recharger l'application tutti.action.reload.ui=Recharger l'interface graphique

1 0

r417 - trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/referential
by tchemit＠users.forge.codelutin.com Feb. 14, 2013

Feb. 14, 2013

Author: tchemit Date: 2013-02-15 00:55:47 +0100 (Fri, 15 Feb 2013) New Revision: 417 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/417 Log: add synchro service Added: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/referential/TuttiReferentialSynchronizeService.java Added: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/referential/TuttiReferentialSynchronizeService.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/referential/TuttiReferentialSynchronizeService.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/referential/TuttiReferentialSynchronizeService.java 2013-02-14 23:55:47 UTC (rev 417) @@ -0,0 +1,83 @@ +package fr.ifremer.tutti.service.referential; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.config.TuttiPersistenceConfig; +import fr.ifremer.tutti.persistence.entities.TuttiEntities; +import fr.ifremer.tutti.persistence.service.TuttiPersistenceServiceLocator; +import fr.ifremer.tutti.persistence.service.synchro.ReferentialSynchronizeResult; +import fr.ifremer.tutti.persistence.service.synchro.ReferentialSynchronizeService; +import fr.ifremer.tutti.service.AbstractTuttiService; +import fr.ifremer.tutti.service.PersistenceService; +import fr.ifremer.tutti.service.TuttiServiceContext; + +import java.io.File; +import java.util.Properties; + +/** + * @author tchemit <chemit(a)codelutin.com> + * @since 1.0 + */ +public class TuttiReferentialSynchronizeService extends AbstractTuttiService { + + protected PersistenceService persistenceService; + + protected ReferentialSynchronizeService synchroService; + + @Override + public void setServiceContext(TuttiServiceContext context) { + super.setServiceContext(context); + synchroService = TuttiPersistenceServiceLocator.getReferentialSynchronizeService(); + persistenceService = getService(PersistenceService.class); + } + + public void prepare(File dbDirectory, ReferentialSynchronizeResult result) { + Properties remoteConnectionProperties = getRemoteProperties(dbDirectory); + synchroService.prepare(remoteConnectionProperties, result); + } + + public void synchronize(File dbDirectory, + ReferentialSynchronizeResult result) { + Properties remoteConnectionProperties = getRemoteProperties(dbDirectory); + synchroService.synchronize(remoteConnectionProperties, result); + } + + protected Properties getRemoteProperties(File dbDirectory) { + Properties remoteConnectionProperties = new Properties(); + TuttiPersistenceConfig persistenceConfig = + context.getConfig().getPersistenceConfig(); + + String jdbcUrl = TuttiEntities.getJdbcUrl(dbDirectory, + persistenceConfig.getDbName()); + + TuttiEntities.fillConnectionProperties(remoteConnectionProperties, + jdbcUrl, + persistenceConfig.getJdbcUsername(), + persistenceConfig.getJdbcPassword()); + return remoteConnectionProperties; + } + + +} Property changes on: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/referential/TuttiReferentialSynchronizeService.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native

1 0

r416 - in trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util: . action
by tchemit＠users.forge.codelutin.com Feb. 14, 2013

Feb. 14, 2013

Author: tchemit Date: 2013-02-15 00:55:36 +0100 (Fri, 15 Feb 2013) New Revision: 416 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/416 Log: add action package Added: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/TuttiActionUI.css trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/TuttiActionUI.jaxx trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/TuttiActionUIHandler.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/TuttiActionUIModel.java Added: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/TuttiActionUI.css =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/TuttiActionUI.css (rev 0) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/TuttiActionUI.css 2013-02-14 23:55:36 UTC (rev 416) @@ -0,0 +1,61 @@ +/* + * #%L + * Tutti :: UI + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ +#globalPanel { + border: {new TitledBorder((String) null)}; +} + +#globalActionLabel { + border: {new EmptyBorder(5, 5, 5, 5)}; +} + +#globalProgressBar { + indeterminate: true; +} + +#taskPanel { + visible: false; + border: {new TitledBorder((String) null)}; +} + +#taskProgressBar { + indeterminate: false; +} + +#taskActionLabel { + border: {new EmptyBorder(5, 5, 5, 5)}; +} + +#informationPanel { + visible: false; + border: {new TitledBorder((String) null)}; +} + +#informationLabel { + border: {new EmptyBorder(5, 5, 5, 5)}; +} + +#okAction { + actionIcon: information; + text: "tutti.action.ok"; +} Property changes on: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/TuttiActionUI.css ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Added: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/TuttiActionUI.jaxx =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/TuttiActionUI.jaxx (rev 0) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/TuttiActionUI.jaxx 2013-02-14 23:55:36 UTC (rev 416) @@ -0,0 +1,72 @@ + +<JDialog layout='{new BorderLayout()}' width='300' height='200' modal='true' undecorated='true' + implements='fr.ifremer.tutti.ui.swing.TuttiUI<TuttiActionUIModel, TuttiActionUIHandler>'> + <import> + + fr.ifremer.tutti.ui.swing.TuttiUI + fr.ifremer.tutti.ui.swing.TuttiUIContext + + javax.swing.border.EmptyBorder + + static org.nuiton.i18n.I18n._ + </import> + + <script><![CDATA[ + + public TuttiActionUI(JFrame frame, TuttiUIContext context) { + super(frame, true); + TuttiActionUIHandler handler = new TuttiActionUIHandler(context, this); + setContextValue(handler); + handler.beforeInitUI(); + } + + protected void $afterCompleteSetup() { + handler.afterInitUI(); + } + ]]></script> + + <TuttiActionUIHandler id='handler' + initializer='getContextValue(TuttiActionUIHandler.class)'/> + + <TuttiActionUIModel id='model' + initializer='getContextValue(TuttiActionUIModel.class)'/> + + + <JPanel id='globalPanel' constraints='BorderLayout.NORTH' + layout='{new BorderLayout()}'> + <JLabel id='globalActionLabel' constraints='BorderLayout.CENTER'/> + <JProgressBar id='globalProgressBar' constraints='BorderLayout.SOUTH'/> + </JPanel> + <JPanel id='taskPanel' constraints='BorderLayout.CENTER' + layout='{new BorderLayout()}'> + <JLabel id='taskActionLabel' constraints='BorderLayout.CENTER'/> + <JProgressBar id='taskProgressBar' constraints='BorderLayout.SOUTH'/> + </JPanel> +  +</JDialog> \ No newline at end of file Property changes on: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/TuttiActionUI.jaxx ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Added: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/TuttiActionUIHandler.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/TuttiActionUIHandler.java (rev 0) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/TuttiActionUIHandler.java 2013-02-14 23:55:36 UTC (rev 416) @@ -0,0 +1,185 @@ +package fr.ifremer.tutti.ui.swing.util.action; + +/* + * #%L + * Tutti :: UI + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.ProgressionModel; +import fr.ifremer.tutti.ui.swing.AbstractTuttiAction; +import fr.ifremer.tutti.ui.swing.AbstractTuttiUIHandler; +import fr.ifremer.tutti.ui.swing.TuttiUIContext; +import jaxx.runtime.SwingUtil; +import jaxx.runtime.validator.swing.SwingValidator; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; + +import javax.swing.SwingUtilities; +import java.beans.PropertyChangeEvent; +import java.beans.PropertyChangeListener; + +import static org.nuiton.i18n.I18n._; + +/** + * @author tchemit <chemit(a)codelutin.com> + * @since 1.0 + */ +public class TuttiActionUIHandler extends AbstractTuttiUIHandler<TuttiActionUIModel, TuttiActionUI> { + + /** Logger. */ + private static final Log log = + LogFactory.getLog(TuttiActionUIHandler.class); + + + public TuttiActionUIHandler(TuttiUIContext context, TuttiActionUI ui) { + super(context, ui); + } + + protected PropertyChangeListener progressionListener = new PropertyChangeListener() { + @Override + public void propertyChange(PropertyChangeEvent evt) { + + String propertyName = evt.getPropertyName(); + if (ProgressionModel.PROPERTY_MESSAGE.equals(propertyName)) { + + // change message + ui.getTaskActionLabel().setText((String) evt.getNewValue()); + } else if (ProgressionModel.PROPERTY_TOTAL.equals(propertyName)) { + + // change total progressbar max + ui.getTaskProgressBar().setMaximum((Integer) evt.getNewValue()); + + } else if (ProgressionModel.PROPERTY_MESSAGE.equals(propertyName)) { + + // change value of progress bar + ui.getTaskProgressBar().setValue((Integer) evt.getNewValue()); + } + } + }; + + //------------------------------------------------------------------------// + //-- AbstractTuttiUIHandler methods --// + //------------------------------------------------------------------------// + + protected void hideAction() { + getModel().setProgressionModel(null); + ui.setVisible(false); + } + + @Override + public void beforeInitUI() { + TuttiActionUIModel model = new TuttiActionUIModel(); + ui.setContextValue(model); + + model.addPropertyChangeListener(TuttiActionUIModel.PROPERTY_ACTION, new PropertyChangeListener() { + @Override + public void propertyChange(PropertyChangeEvent evt) { + + // udpate global label + AbstractTuttiAction action = (AbstractTuttiAction) evt.getNewValue(); + + if (log.isInfoEnabled()) { + log.info("Action to use: " + action); + } + if (action == null || action.isFailed()) { + + // stoping action + + if (SwingUtilities.isEventDispatchThread()) { + + hideAction(); + } else { + SwingUtilities.invokeLater(new Runnable() { + @Override + public void run() { + hideAction(); + } + }); + } + } else { + + // starting action + if (ui.getOwner() != null) { + + SwingUtil.center(ui.getOwner(), ui); + } + // new action + ui.getGlobalActionLabel().setText(_("tutti.message.action.running", action.getActionDescription())); + ui.pack(); + ui.setVisible(true); + } + } + }); + + model.addPropertyChangeListener(TuttiActionUIModel.PROPERTY_PROGRESSION_MODEL, new PropertyChangeListener() { + @Override + public void propertyChange(PropertyChangeEvent evt) { + + // change progression model + + ProgressionModel oldValue = (ProgressionModel) evt.getOldValue(); + ProgressionModel newValue = (ProgressionModel) evt.getNewValue(); + + if (log.isInfoEnabled()) { + log.info("progression model: " + newValue); + } + if (oldValue != null) { + oldValue.removePropertyChangeListener(progressionListener); + } + + if (newValue == null) { + + // remove progression model +// ui.getGlobalProgressBar().setVisible(true); + ui.getTaskPanel().setVisible(false); + } else { + + // use progression model +// ui.getGlobalProgressBar().setVisible(false); + ui.getTaskPanel().setVisible(true); + + newValue.addPropertyChangeListener(progressionListener); + } + } + }); + } + + @Override + public void afterInitUI() { + + initUI(ui); + } + + @Override + public void onCloseUI() { + + } + + @Override + public SwingValidator<TuttiActionUIModel> getValidator() { + return null; + } + + public void closeAction() { + getModel().clear(); + } +} Property changes on: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/TuttiActionUIHandler.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Added: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/TuttiActionUIModel.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/TuttiActionUIModel.java (rev 0) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/TuttiActionUIModel.java 2013-02-14 23:55:36 UTC (rev 416) @@ -0,0 +1,71 @@ +package fr.ifremer.tutti.ui.swing.util.action; + +/* + * #%L + * Tutti :: UI + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.ProgressionModel; +import fr.ifremer.tutti.ui.swing.AbstractTuttiAction; +import org.jdesktop.beans.AbstractSerializableBean; + +/** + * @author tchemit <chemit(a)codelutin.com> + * @since 1.0 + */ +public class TuttiActionUIModel extends AbstractSerializableBean { + + private static final long serialVersionUID = 1L; + + public static final String PROPERTY_ACTION = "action"; + + public static final String PROPERTY_PROGRESSION_MODEL = "progressionModel"; + + protected AbstractTuttiAction action; + + protected ProgressionModel progressionModel; + + public ProgressionModel getProgressionModel() { + return progressionModel; + } + + public void setProgressionModel(ProgressionModel progressionModel) { + Object oldValue = getProgressionModel(); + this.progressionModel = progressionModel; + firePropertyChange(PROPERTY_PROGRESSION_MODEL, oldValue, progressionModel); + } + + public AbstractTuttiAction getAction() { + return action; + } + + public void setAction(AbstractTuttiAction action) { + Object oldValue = getAction(); + this.action = action; + firePropertyChange(PROPERTY_ACTION, oldValue, action); + } + + public void clear() { + setProgressionModel(null); + setAction(null); + } +} Property changes on: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/action/TuttiActionUIModel.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native

1 0

r415 - in trunk: . src/site src/site/rst
by tchemit＠users.forge.codelutin.com Feb. 14, 2013

Feb. 14, 2013

Author: tchemit Date: 2013-02-15 00:55:08 +0100 (Fri, 15 Feb 2013) New Revision: 415 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/415 Log: begin doc + update last nuiton-utils snapshot Added: trunk/src/site/rst/protocol.rst trunk/src/site/rst/temporaryReferential.rst trunk/src/site/rst/update.rst Modified: trunk/pom.xml trunk/src/site/site_fr.xml Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2013-02-14 23:53:34 UTC (rev 414) +++ trunk/pom.xml 2013-02-14 23:55:08 UTC (rev 415) @@ -124,7 +124,7 @@  - <nuitonUtilsVersion>2.6.7</nuitonUtilsVersion> + <nuitonUtilsVersion>2.6.8-SNAPSHOT</nuitonUtilsVersion> <nuitonI18nVersion>2.5</nuitonI18nVersion> <eugenePluginVersion>2.6.1</eugenePluginVersion> @@ -138,7 +138,7 @@ <slf4jVersion>1.7.2</slf4jVersion> - <adagioVersion>3.3.1-SNAPSHOT</adagioVersion> + <adagioVersion>3.3.2-SNAPSHOT</adagioVersion> <msaccessImporterVersion>1.4.1</msaccessImporterVersion> Added: trunk/src/site/rst/protocol.rst =================================================================== --- trunk/src/site/rst/protocol.rst (rev 0) +++ trunk/src/site/rst/protocol.rst 2013-02-14 23:55:08 UTC (rev 415) @@ -0,0 +1,30 @@ +.. - +.. * #%L +.. * Tutti +.. * $Id$ +.. * $HeadURL$ +.. * %% +.. * Copyright (C) 2012 - 2013 Ifremer +.. * %% +.. * This program is free software: you can redistribute it and/or modify +.. * it under the terms of the GNU General Public License as +.. * published by the Free Software Foundation, either version 3 of the +.. * License, or (at your option) any later version. +.. * +.. * This program is distributed in the hope that it will be useful, +.. * but WITHOUT ANY WARRANTY; without even the implied warranty of +.. * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +.. * GNU General Public License for more details. +.. * +.. * You should have received a copy of the GNU General Public +.. * License along with this program. If not, see +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. +.. * #L% +.. - + + +==================== +Gestion du protocole +==================== + +TODO \ No newline at end of file Property changes on: trunk/src/site/rst/protocol.rst ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Added: trunk/src/site/rst/temporaryReferential.rst =================================================================== --- trunk/src/site/rst/temporaryReferential.rst (rev 0) +++ trunk/src/site/rst/temporaryReferential.rst 2013-02-14 23:55:08 UTC (rev 415) @@ -0,0 +1,30 @@ +.. - +.. * #%L +.. * Tutti +.. * $Id$ +.. * $HeadURL$ +.. * %% +.. * Copyright (C) 2012 - 2013 Ifremer +.. * %% +.. * This program is free software: you can redistribute it and/or modify +.. * it under the terms of the GNU General Public License as +.. * published by the Free Software Foundation, either version 3 of the +.. * License, or (at your option) any later version. +.. * +.. * This program is distributed in the hope that it will be useful, +.. * but WITHOUT ANY WARRANTY; without even the implied warranty of +.. * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +.. * GNU General Public License for more details. +.. * +.. * You should have received a copy of the GNU General Public +.. * License along with this program. If not, see +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. +.. * #L% +.. - + + +==================================== +Gestion des référentiels temporaires +==================================== + +TODO \ No newline at end of file Property changes on: trunk/src/site/rst/temporaryReferential.rst ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Added: trunk/src/site/rst/update.rst =================================================================== --- trunk/src/site/rst/update.rst (rev 0) +++ trunk/src/site/rst/update.rst 2013-02-14 23:55:08 UTC (rev 415) @@ -0,0 +1,119 @@ +.. - +.. * #%L +.. * Tutti +.. * $Id$ +.. * $HeadURL$ +.. * %% +.. * Copyright (C) 2012 - 2013 Ifremer +.. * %% +.. * This program is free software: you can redistribute it and/or modify +.. * it under the terms of the GNU General Public License as +.. * published by the Free Software Foundation, either version 3 of the +.. * License, or (at your option) any later version. +.. * +.. * This program is distributed in the hope that it will be useful, +.. * but WITHOUT ANY WARRANTY; without even the implied warranty of +.. * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +.. * GNU General Public License for more details. +.. * +.. * You should have received a copy of the GNU General Public +.. * License along with this program. If not, see +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. +.. * #L% +.. - + +======================= +Mise à jour du logiciel +======================= + +Présentation +------------ + +**Tutti** utilise un mécanisme simple pour effectuer les mises à jour de ses +différents composants, à savoir: + +1. Mise à jour de la JRE +2. Mise à jour du programme Tutti +3. Mise à jour des fichiers de traductions +4. Mise à jour de la base de données. + +Principe des mises à jour +------------------------- + +Chaque composant est contenu dans un répertoire et possède un fichier +obligatoirement nommé **version.appup** qui contient la version du composant. + +Un fichier de propriétés disponible sur le réseau à l'adresse suivante: +http://appup.forge.codelutin.com/tutti/update-tutti.properties + +contient la description des dernières version disponibles. + +:: + + ################################################################################ + ### JRE Updates ################################################################ + ################################################################################ + + jre.version=1.7.10 + linux.amd64.jre.url=zip:http://nexus.nuiton.org/nexus/content/repositories/… + linux.i386.jre.url=zip:http://nexus.nuiton.org/nexus/content/repositories/j… + windows.amd64.jre.url=zip:http://nexus.nuiton.org/nexus/content/repositorie… + windows.i386.jre.url=zip:http://nexus.nuiton.org/nexus/content/repositories… + + ################################################################################ + ### Tutti Updates ############################################################## + ################################################################################ + + tutti.version=1.0-SNAPSHOT + tutti.url=zip:http://nexus.nuiton.org/nexus/content/repositories/other-rele… + + ################################################################################ + ### I18n Updates ############################################################### + ################################################################################ + + i18n.version=1.0-SNAPSHOT + i18n.url=zip:http://nexus.nuiton.org/nexus/content/repositories/other-relea… + + ################################################################################ + ### DB Updates ################################################################# + ################################################################################ + + db.version=2013.02.02 + db.url=zip:http://appup.forge.codelutin.com/tutti/auth/tutti-db-2013.02.02.… + db.auth=true + +Au démarrage de l'application le fichier est lu et si un des composants est +plus récent dans la description du fichier de mises à jour, il est téléchargé +puis l'application l'intègre. + +Chaque composant téléchargeable doit être un fichier zip (mais d'autre formats +d'archivage sont possibles) et contenir un seul répertoire (il n'est pas +possible d'avoir le composant directement à la racine de l'archive). + +Mettre en place une nouvelle mise à jour +---------------------------------------- + +Pour pouvoir définir une nouvelle mise à jour, il faut donc modifier le fichier +de mises à jour : + +1. changer la version du composant +2. changer l'url de téléchargement du composant. + +Mise à jour sécurisées +---------------------- + +La mise à jour de la base est sécurisée, à savoir que l'url d'accès au zip de +la base requière un mot de passe. + +Le fichier de mise à jour quand à lui sera toujours disponible publiquement. + +Pré-requis à la création d'une nouvelle version de Tutti +-------------------------------------------------------- + +pour pouvoir créer une nouvelle version de Tutti, il nous faut connaitre la +dernière mise à jour de la base. + +Ainsi nous pourrons monter les version du fichier de mise à jour automatiquement. + +Les autres composants (jre, tutti et i18n) sont automatiquement gérés lors de +la création de la nouvelle version. \ No newline at end of file Property changes on: trunk/src/site/rst/update.rst ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Modified: trunk/src/site/site_fr.xml =================================================================== --- trunk/src/site/site_fr.xml 2013-02-14 23:53:34 UTC (rev 414) +++ trunk/src/site/site_fr.xml 2013-02-14 23:55:08 UTC (rev 415) @@ -96,7 +96,8 @@ <menu name="Tutti"> <item name="Accueil" href="index.html"/> - <item name="Configuration" href="./application-config-report.html"/> + <item name="Gestion du protocole" href="./protocol.html"/> + <item name="Référentiels temporaires" href="./temporaryReferential.html"/> <item name="Téléchargement" href="http://forge.codelutin.com/projects/tutti/files"/> <item name="Roadmap" @@ -105,7 +106,9 @@ </menu> <menu name="Documentation Technique"> + <item name="Configuration" href="./application-config-report.html"/> <item name="Référentiel" href="referential.html"/> + <item name="Mise à jour des versions" href="./update.html"/> </menu> <menu ref="reports"/>

1 0

r414 - in trunk/tutti-persistence: . src/main/java/fr/ifremer/tutti/persistence src/main/java/fr/ifremer/tutti/persistence/entities src/main/java/fr/ifremer/tutti/persistence/service src/main/java/fr/ifremer/tutti/persistence/service/synchro src/main/resources src/test/java/fr/ifremer/tutti/persistence src/test/java/fr/ifremer/tutti/persistence/service src/test/java/fr/ifremer/tutti/persistence/service/synchro
by tchemit＠users.forge.codelutin.com Feb. 14, 2013

Feb. 14, 2013

Author: tchemit Date: 2013-02-15 00:53:34 +0100 (Fri, 15 Feb 2013) New Revision: 414 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/414 Log: improve synchro (add progressionModel in result) + add missingsvnproperties,... Added: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/ProgressionModel.java Modified: trunk/tutti-persistence/pom.xml trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceService.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeHelper.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeResult.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeService.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeServiceImpl.java trunk/tutti-persistence/src/main/resources/tutti-db-enumerations.properties trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/DatabaseResource.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceReadTest.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceWriteTest.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeHelperTest.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeServiceImplTest.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeServiceImplUpTodateTest.java Modified: trunk/tutti-persistence/pom.xml =================================================================== --- trunk/tutti-persistence/pom.xml 2013-02-14 15:27:16 UTC (rev 413) +++ trunk/tutti-persistence/pom.xml 2013-02-14 23:53:34 UTC (rev 414) @@ -88,6 +88,11 @@ <artifactId>commons-dbcp</artifactId> </dependency> + <dependency> + <groupId>org.swinglabs.swingx</groupId> + <artifactId>swingx-common</artifactId> + </dependency> +  <dependency> Added: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/ProgressionModel.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/ProgressionModel.java (rev 0) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/ProgressionModel.java 2013-02-14 23:53:34 UTC (rev 414) @@ -0,0 +1,101 @@ +package fr.ifremer.tutti.persistence; + +/* + * #%L + * Tutti :: Persistence + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import org.jdesktop.beans.AbstractSerializableBean; + +/** + * Simple model for a progression long task. + * + * @author tchemit <chemit(a)codelutin.com> + * @since 1.0 + */ +public class ProgressionModel extends AbstractSerializableBean { + + private static final long serialVersionUID = 1L; + + public static final String PROPERTY_TOTAL = "total"; + + public static final String PROPERTY_CURRENT = "current"; + + public static final String PROPERTY_RATE = "rate"; + + public static final String PROPERTY_MESSAGE = "message"; + + protected int total; + + protected int current; + + protected float rate; + + protected String message; + + public long getTotal() { + return total; + } + + public void setTotal(int total) { + Object oldValue = getTotal(); + this.total = total; + firePropertyChange(PROPERTY_TOTAL, oldValue, total); + setCurrent(0); + } + + public long getCurrent() { + return current; + } + + public void setCurrent(int current) { + Object oldValue = getCurrent(); + this.current = current; + firePropertyChange(PROPERTY_CURRENT, oldValue, current); + } + + public void increments(int nb) { + setCurrent(current + nb); + setRate(getCurrent() / getTotal()); + } + + public float getRate() { + return rate; + } + + public void setRate(float rate) { + Object oldValue = getRate(); + this.rate = rate; + firePropertyChange(PROPERTY_RATE, oldValue, rate); + + } + + public String getMessage() { + return message; + } + + public void setMessage(String message) { + Object oldValue = getMessage(); + this.message = message; + firePropertyChange(PROPERTY_MESSAGE, oldValue, message); + } +} Property changes on: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/ProgressionModel.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java 2013-02-14 15:27:16 UTC (rev 413) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java 2013-02-14 23:53:34 UTC (rev 414) @@ -223,6 +223,10 @@ p.put(Environment.PASS, password); } + public static String getJdbcUrl(File directory, String dbName) { + return "jdbc:hsqldb:file:" + directory.getAbsolutePath() + "/" + dbName; + } + protected static class IdPredicate<B extends IdAware> implements Predicate<B> { private final String id; Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceService.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceService.java 2013-02-14 15:27:16 UTC (rev 413) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceService.java 2013-02-14 23:53:34 UTC (rev 414) @@ -1,8 +1,33 @@ -package fr.ifremer.tutti.persistence.service; - -import org.springframework.transaction.annotation.Transactional; - -@Transactional(readOnly = true) -public interface BatchPersistenceService extends CatchBatchPersistenceService, SpeciesBatchPersistenceService{ - -} +package fr.ifremer.tutti.persistence.service; + +/* + * #%L + * Tutti :: Persistence + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + + +import org.springframework.transaction.annotation.Transactional; + +@Transactional(readOnly = true) +public interface BatchPersistenceService extends CatchBatchPersistenceService, SpeciesBatchPersistenceService { + +} \ No newline at end of file Property changes on: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceService.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceImpl.java 2013-02-14 15:27:16 UTC (rev 413) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceImpl.java 2013-02-14 23:53:34 UTC (rev 414) @@ -1,1297 +1,1322 @@ -package fr.ifremer.tutti.persistence.service; - -import static org.nuiton.i18n.I18n._; - -import java.io.Serializable; -import java.text.MessageFormat; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collection; -import java.util.HashMap; -import java.util.HashSet; -import java.util.Iterator; -import java.util.List; -import java.util.Map; -import java.util.Set; - -import javax.annotation.Resource; - -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; -import org.hibernate.FlushMode; -import org.hibernate.type.IntegerType; -import org.springframework.cache.annotation.CacheEvict; -import org.springframework.dao.DataIntegrityViolationException; -import org.springframework.dao.DataRetrievalFailureException; -import org.springframework.stereotype.Service; - -import com.google.common.base.Preconditions; -import com.google.common.collect.Lists; - -import fr.ifremer.adagio.core.dao.data.batch.Batch; -import fr.ifremer.adagio.core.dao.data.batch.CatchBatchExtendDao; -import fr.ifremer.adagio.core.dao.data.batch.SortingBatch; -import fr.ifremer.adagio.core.dao.data.batch.SortingBatchDao; -import fr.ifremer.adagio.core.dao.data.batch.denormalized.DenormalizedBatchDao; -import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidationError; -import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidationException; -import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidator; -import fr.ifremer.adagio.core.dao.data.measure.QuantificationMeasurement; -import fr.ifremer.adagio.core.dao.data.measure.SortingMeasurement; -import fr.ifremer.adagio.core.dao.data.operation.FishingOperationImpl; -import fr.ifremer.adagio.core.dao.referential.QualityFlagImpl; -import fr.ifremer.adagio.core.dao.referential.taxon.ReferenceTaxon; -import fr.ifremer.adagio.core.dao.referential.taxon.ReferenceTaxonImpl; -import fr.ifremer.adagio.core.dao.technical.synchronization.SynchronizationStatus; -import fr.ifremer.tutti.persistence.entities.data.CatchBatch; -import fr.ifremer.tutti.persistence.entities.data.SampleCategoryEnum; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; -import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; -import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; -import fr.ifremer.tutti.persistence.entities.referential.CaracteristicType; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import fr.ifremer.tutti.persistence.service.measure.MeasurementPersistenceHelper; - -@Service("batchPersistenceService") -public class BatchPersistenceServiceImpl - extends AbstractPersistenceService implements BatchPersistenceService, CatchBatchValidator - { - - /** Logger. */ - private static final Log log = - LogFactory.getLog(BatchPersistenceServiceImpl.class); - - @Resource(name = "referentialPersistenceService") - protected ReferentialPersistenceService referentialService; - - @Resource(name = "denormalizedBatchDao") - protected DenormalizedBatchDao denormalizedBatchDao; - - @Resource(name = "sortingBatchDao") - protected SortingBatchDao sortingBatchDao; - - @Resource(name = "catchBatchDao") - protected CatchBatchExtendDao catchBatchDao; - - @Resource(name = "measurementPersistenceHelper") - protected MeasurementPersistenceHelper measurementHelper; - - @Override - public void init() { - super.init(); - catchBatchDao.registerCatchBatchValidator(this); - } - - @Override - public void close() { - catchBatchDao.unregisterCatchBatchValidator(this); - super.close(); - } - - @Override - public boolean isEnable(fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch) { - // Apply validation only on catch batch for fishingOperation - return (catchBatch.getFishingOperation() != null); - } - - @Override - public List<CatchBatchValidationError> validate(fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch) { - List<CatchBatchValidationError> errors = Lists.newArrayList(); - validate(catchBatch.getChildBatchs(), errors, 1); - return errors; - } - - @Override - public CatchBatch getCatchBatchFromFishingOperation(String fishingOperationId) { - Preconditions.checkNotNull(fishingOperationId); - - Integer catchBatchId = catchBatchDao.getIdByFishingOperationId(Integer.valueOf(fishingOperationId)); - - fr.ifremer.adagio.core.dao.data.batch.CatchBatch source; - try { - source = catchBatchDao.loadFullTree(catchBatchId, true, true); - } catch (CatchBatchValidationException e) { - throw new DataRetrievalFailureException("Invalid batch tree structure, for fishing operation id=" + fishingOperationId, e); - } - - CatchBatch result = new CatchBatch(); - result.setId(source.getId().toString()); - result.setCatchTotalWeight(source.getWeight()); - - // Vrac - SortingBatch vracBatch = catchBatchDao.getSortingBatch(source.getChildBatchs(), - "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID); - result.setCatchTotalSortedCarousselWeight(vracBatch.getWeight()); - result.setCatchTotalSortedTremisWeight(vracBatch.getWeightBeforeSampling()); - { - // Species - SortingBatch speciesBatch = catchBatchDao.getSortingBatch(vracBatch.getChildBatchs(), - "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); - - result.setSpeciesTotalSampleSortedWeight(speciesBatch.getWeight()); - result.setSpeciesTotalSortedWeight(speciesBatch.getWeightBeforeSampling()); - - { - // Inert - SortingBatch inertBatch = catchBatchDao.getSortingBatch(speciesBatch.getChildBatchs(), - "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_INERT); - result.setSpeciesTotalInertWeight(inertBatch.getWeight()); - - // Alive no itemized - SortingBatch livingNotItemizedBatch = catchBatchDao.getSortingBatch(speciesBatch.getChildBatchs(), - "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_LIFE); - result.setSpeciesTotalLivingNotItemizedWeight(livingNotItemizedBatch.getWeight()); - } - - // TODO : Benthos, Plancton... - } - - // Hors Vrac - SortingBatch horsVracBatch = catchBatchDao.getSortingBatch(source.getChildBatchs(), - "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID); - result.setCatchTotalUnsortedWeight(horsVracBatch.getWeight()); - { - // Species - SortingBatch speciesBatch = catchBatchDao.getSortingBatch(horsVracBatch.getChildBatchs(), - "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); - - result.setSpeciesTotalUnsortedWeight(speciesBatch.getWeight()); - - // TODO : Benthos, Plancton... - } - - // Non trié - SortingBatch unsortedBatch = catchBatchDao.getSortingBatch(source.getChildBatchs(), - "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_UNSORTED_ID); - result.setCatchTotalRejectedWeight(unsortedBatch.getWeight()); - - return result; - } - - @Override - - public CatchBatch createCatchBatch(CatchBatch bean) { - Preconditions.checkNotNull(bean); - Preconditions.checkArgument(bean.getId() == null); - Preconditions.checkNotNull(bean.getFishingOperation()); - Preconditions.checkNotNull(bean.getFishingOperation().getId()); - - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = fr.ifremer.adagio.core.dao.data.batch.CatchBatch.Factory.newInstance(); - beanToEntity(bean, catchBatch, true); - catchBatch = catchBatchDao.create(catchBatch); - bean.setId(String.valueOf(catchBatch.getId())); - - // Link to fishing operation - getCurrentSession().flush(); - Integer fishingOperationId = Integer.valueOf(bean.getFishingOperation().getId()); - int rowUpdated = queryUpdate("updateFishingOperationCatchBatch", - "fishingOperationId", IntegerType.INSTANCE, fishingOperationId, - "catchBatchId", IntegerType.INSTANCE, catchBatch.getId()); - if (rowUpdated == 0) { - throw new DataIntegrityViolationException("Could not attach catch batch to the given operation : operation was not found."); - } - - return bean; - } - - @Override - @CacheEvict(value = "batchTree", key="#bean.fishingOperation.id") - public CatchBatch saveCatchBatch(CatchBatch bean) { - - Preconditions.checkNotNull(bean); - Preconditions.checkNotNull(bean.getId()); - - getCurrentSession().enableFetchProfile("batch-with-childs"); - getCurrentSession().setFlushMode(FlushMode.COMMIT); - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.load(Integer.valueOf(bean.getId())); - if (catchBatch == null) { - throw new DataRetrievalFailureException("Could not retrieve catch batch with id=" + bean.getId()); - } - - beanToEntity(bean, catchBatch, true); - catchBatchDao.update(catchBatch); - getCurrentSession().flush(); - - return bean; - } - - @Override - public List<SpeciesBatch> getAllRootSpeciesBatch(String fishingOperationId) { - - // Load batch tree - Integer catchBatchId = catchBatchDao.getIdByFishingOperationId(Integer.valueOf(fishingOperationId)); - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); - - List<SpeciesBatch> result = new ArrayList<SpeciesBatch>(); - - // Vrac / Species - SortingBatch vracSpeciesBatch = catchBatchDao.getSortingBatch(catchBatch.getChildBatchs(), - "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, - "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); - for (Iterator<Batch> iterator = vracSpeciesBatch.getChildBatchs().iterator(); iterator.hasNext();) { - SortingBatch source = (SortingBatch) iterator.next(); - - // evict some special batches : Life (or Biota) and Inert - if (source.getReferenceTaxon() != null - && enumeration.REFERENCE_TAXON_ID_LIFE.equals(source.getReferenceTaxon().getId()) == false - && enumeration.REFERENCE_TAXON_ID_INERT.equals(source.getReferenceTaxon().getId()) == false) { - SpeciesBatch target = new SpeciesBatch(); - - entityToBean(source, target); - result.add(target); - } - } - - // Hors-Vrac / Species - SortingBatch horsVracSpeciesBatch = catchBatchDao.getSortingBatch(catchBatch.getChildBatchs(), - "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, - "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); - for (Iterator<Batch> iterator = horsVracSpeciesBatch.getChildBatchs().iterator(); iterator.hasNext();) { - SortingBatch source = (SortingBatch) iterator.next(); - - SpeciesBatch target = new SpeciesBatch(); - - entityToBean(source, target); - result.add(target); - } - - return result; - } - - protected SpeciesBatch entityToBean(SortingBatch source, SpeciesBatch target) { - - target.setId(source.getId().toString()); - - // Individual count - target.setNumber(source.getIndividualCount()); - - // Convert database weight (and sampling ratio) into UI weight and sampleCategoryWeight - if (source.getWeight() != null && source.getWeightBeforeSampling() == null) { - target.setSampleCategoryWeight(source.getWeight()); - } - else { - target.setWeight(source.getWeight()); - target.setSampleCategoryWeight(source.getWeightBeforeSampling()); - } - - // Comments - target.setComment(source.getComments()); - - // Sample category type (only one is applied) - SortingMeasurement sm = null; - if (source.getSortingMeasurements().size() == 1) { - sm = source.getSortingMeasurements().iterator().next(); - } - else if (source.getReferenceTaxon() != null && source.getReferenceTaxon().getId() != null){ - sm = measurementHelper.getInheritedSortingMeasurement(source, enumeration.PMFM_ID_SORTED_UNSORTED); - } - if (sm != null) { - SampleCategoryEnum sampleCategory = referentialService.getSampleCategoryByPmfmId(sm.getPmfm().getId()); - if (sampleCategory != null) { - setSampleCategoryQualitative(target, sm.getPmfm().getId(), sm.getNumericalValue(), sm.getAlphanumericalValue(), sm.getQualitativeValue().getId()); - } - } - - // Species - Integer referenceTaxonId = source.getInheritedReferenceTaxonId(); - if (referenceTaxonId == null && source.getReferenceTaxon() != null) { - referenceTaxonId = source.getReferenceTaxon().getId(); - } - if (referenceTaxonId != null) { - // TODO : add cache on getSpeciesByReferenceTaxonId - Species species = referentialService.getSpeciesByReferenceTaxonId(referenceTaxonId); - target.setSpecies(species); - } - - if (target.getSampleCategoryType() != null && source.getChildBatchs().size() > 0) { - List<SpeciesBatch> targetChilds = Lists.newArrayList(); - for (Iterator<Batch> iterator = source.getChildBatchs().iterator(); iterator.hasNext();) { - SortingBatch sourceChild = (SortingBatch) iterator.next(); - SpeciesBatch targetChild = new SpeciesBatch(); - entityToBean(sourceChild, targetChild); - if (targetChild.getSampleCategoryValue() != null) { - targetChilds.add(targetChild); - targetChild.setParentBatch(target); - } - } - target.setChildBatchs(targetChilds); - } - - return target; - } - - @Override - public SpeciesBatch createSpeciesBatch(SpeciesBatch bean, - String parentBatchId) { - Preconditions.checkNotNull(bean); - Preconditions.checkArgument(bean.getId() == null); - Preconditions.checkNotNull(bean.getSpecies()); - Preconditions.checkNotNull(bean.getSpecies().getId()); - Preconditions.checkNotNull(bean.getFishingOperation()); - Preconditions.checkNotNull(bean.getFishingOperation().getId()); - - getCurrentSession().setFlushMode(FlushMode.COMMIT); - - // Load full batch tree - Integer catchBatchId = catchBatchDao.getIdByFishingOperationId(Integer.valueOf(bean.getFishingOperation().getId())); - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); - - SortingBatch batch = SortingBatch.Factory.newInstance(); - beanToEntity(bean, batch, parentBatchId, catchBatch, true); - batch = sortingBatchDao.create(batch); - - bean.setId(String.valueOf(batch.getId())); - - getCurrentSession().flush(); - - return bean; - } - - @Override - public SpeciesBatch saveSpeciesBatch(SpeciesBatch bean) { - Preconditions.checkNotNull(bean); - Preconditions.checkNotNull(bean.getId()); - - // Load full batch tree - Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(Integer.valueOf(bean.getId())); - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); - - getCurrentSession().setFlushMode(FlushMode.COMMIT); - - SortingBatch batch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(bean.getId())); - String parentBatchId = null; - if (bean.getParentBatch() != null) { - parentBatchId = bean.getParentBatch().getId(); - } - beanToEntity(bean, batch, parentBatchId, catchBatch, true); - sortingBatchDao.update(batch); - getCurrentSession().flush(); - - return bean; - } - - @Override - public void deleteSpeciesBatch(String id) { - Preconditions.checkNotNull(id); - - getCurrentSession().setFlushMode(FlushMode.COMMIT); - - catchBatchDao.removeWithChildren(Integer.valueOf(id)); - - getCurrentSession().flush(); - } - - public void deleteSpeciesSubBatch(String id) { - deleteSpeciesBatch(id); - } - - public void changeSpeciesBatchSpecies(String batchId, Species species) { - Preconditions.checkNotNull(batchId); - Preconditions.checkNotNull(species); - Preconditions.checkNotNull(species.getReferenceTaxonId()); - - if (log.isDebugEnabled()) { - log.debug("Changing species for batch id=" + batchId); - } - - int rowUpdated = queryUpdate("updateBatchSpecies", - "batchId", IntegerType.INSTANCE, Integer.valueOf(batchId), - "referenceTaxonId", IntegerType.INSTANCE, species.getReferenceTaxonId()); - Preconditions.checkArgument(rowUpdated == 1, "Unable to update operation, to be linked with catch batch."); - } - - public List<SpeciesBatchFrequency> getAllSpeciesBatchFrequency( - String speciesBatchId) { - List<SpeciesBatchFrequency> results = Lists.newArrayList(); - - Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(Integer.valueOf(speciesBatchId)); - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); - - if (catchBatchId == null) { - return results; - } - - SortingBatch sortingBatch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(speciesBatchId)); - - for (Iterator<Batch> iterator = sortingBatch.getChildBatchs().iterator(); iterator.hasNext();) { - SortingBatch source = (SortingBatch) iterator.next(); - SpeciesBatchFrequency target = new SpeciesBatchFrequency(); - - entityToBean(source, target); - results.add(target); - } - return results; - } - - protected void entityToBean(SortingBatch source, SpeciesBatchFrequency target) { - - target.setId(source.getId().toString()); - - target.setNumber(source.getIndividualCount()); - target.setWeight(source.getWeight()); - target.setComment(source.getComments()); - - // Length step category - if (source.getSortingMeasurements().size() == 1) { - SortingMeasurement sm = source.getSortingMeasurements().iterator().next(); - if (sm.getPmfm() != null && sm.getPmfm().getId() != null) { - Caracteristic lengthStepCaracteristic = referentialService.getCaracteristic(sm.getPmfm().getId()); - target.setLengthStepCaracteristic(lengthStepCaracteristic); - } - - // Length - target.setLengthStep(sm.getNumericalValue()); - } - } - - public List<SpeciesBatchFrequency> saveSpeciesBatchFrequency( - String speciesBatchId, List<SpeciesBatchFrequency> frequencies) { - Preconditions.checkNotNull(speciesBatchId); - Preconditions.checkNotNull(frequencies); - - if (frequencies.size() == 0) { - return frequencies; - } - getCurrentSession().setFlushMode(FlushMode.COMMIT); - - Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(Integer.valueOf(speciesBatchId)); - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); - - if (catchBatch == null) { - return frequencies; - } - - // Retrieve parent - SortingBatch parentBatch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(speciesBatchId)); - - // Remember child ids, to remove unchanged item (see at bottom in this method) - List<Integer> notUpdatedChildIds = Lists.newArrayList(); - for (Iterator<Batch> iterator = parentBatch.getChildBatchs().iterator(); iterator.hasNext();) { - SortingBatch sortingBatch = (SortingBatch) iterator.next(); - notUpdatedChildIds.add(sortingBatch.getId()); - } - - short rankOrder = 0; - String pmfmId = null; - List<SortingBatch> batchsToUpdate = Lists.newArrayList(); - for (SpeciesBatchFrequency source : frequencies) { - rankOrder++; - - // Check that all frequencies have the same length PMFM - if (pmfmId == null) { - source.getLengthStepCaracteristic().getId(); - } else if (!pmfmId.equals(source.getLengthStepCaracteristic().getId())) { - throw new DataIntegrityViolationException("Batch frequencies under one Speciesbatch must have all the same lengthStepCaracteristic"); - } - - // Not existing batch - SortingBatch target = null; - if (source.getId() == null) { - target = SortingBatch.Factory.newInstance(); - - // Fill the sorting batch from the source - beanToEntity(source, target, parentBatch, rankOrder, true); - - // Create the targeted batch, then update the source id - sortingBatchDao.create(target); - source.setId(target.getId().toString()); - } - - // Existing batch - else { - target = sortingBatchDao.load(Integer.valueOf(source.getId())); - - // Fill the sorting batch from the source - beanToEntity(source, target, parentBatch, rankOrder, true); - - // Add the batch into a list (will be update later, using this list) - batchsToUpdate.add(target); - - notUpdatedChildIds.remove(target.getId()); - } - } - - // If some batchs need to be update, do it - if (batchsToUpdate.size() > 0) { - sortingBatchDao.update(batchsToUpdate); - } - - if (notUpdatedChildIds.size() > 0) { - for (Iterator<Integer> iterator = notUpdatedChildIds.iterator(); iterator.hasNext();) { - Integer batchId = iterator.next(); - catchBatchDao.removeWithChildren(batchId); - } - } - - getCurrentSession().flush(); - - return frequencies; - } - - // ------------------------------------------------------------------------// - // -- Internal methods --// - // ------------------------------------------------------------------------// - - protected void validate(Collection<Batch> batchs, List<CatchBatchValidationError> errors, int treeLevel) { - - List<Integer> expectedPmfms = null; - boolean expectedReferenceTaxon = false; - // First tree level : should have pmfm SORTED (Vrac, Hors Vrac, Non trié) - if (treeLevel == 1) { - expectedPmfms = Lists.newArrayList(enumeration.PMFM_ID_SORTED_UNSORTED); - } - // Second tree level : should have pmfm SORTING_TYPE (Species, Benthos...) - else if (treeLevel == 2) { - expectedPmfms = Lists.newArrayList(enumeration.PMFM_ID_SORTING_TYPE); - } - else if (treeLevel == 3) { - expectedReferenceTaxon = true; - } - else if (treeLevel > 3) { - expectedPmfms = referentialService.getSampleCategoryIds(); - expectedPmfms.remove(enumeration.PMFM_ID_SORTED_UNSORTED); - } - - // First level : should be only PMFM=SORTED - for (Iterator<Batch> iterator = batchs.iterator(); iterator.hasNext();) { - SortingBatch batch = (SortingBatch) iterator.next(); - boolean batchHasError = false; - - // For all sorting measurements - if (batch.getSortingMeasurements() != null && batch.getSortingMeasurements().size() > 0) { - for (Iterator<SortingMeasurement> iterator2 = batch.getSortingMeasurements().iterator(); iterator2.hasNext();) { - SortingMeasurement sm = iterator2.next(); - Integer pmfmId = sm.getPmfm().getId(); - if (expectedReferenceTaxon) { - CatchBatchValidationError error = new CatchBatchValidationError( - "tutti.persistence.batch.validation.onlyTaxonButPmfmFound", - _("tutti.persistence.batch.validation.onlyTaxonButPmfmFound", batch.getId(), pmfmId), - CatchBatchValidationError.GRAVITY_ERROR); - errors.add(error); - } - else if (expectedPmfms.contains(pmfmId) == false) { - if (sm.getNumericalValue() == null || batch.getChildBatchs().size() > 0) { - batchHasError = true; - CatchBatchValidationError error = new CatchBatchValidationError( - "tutti.persistence.batch.validation.pmfmNotFound", - _("tutti.persistence.batch.validation.pmfmNotFound", - batch.getId(), Arrays.toString(expectedPmfms.toArray()), pmfmId), - CatchBatchValidationError.GRAVITY_ERROR); - errors.add(error); - } - } - } - } - else if (expectedPmfms != null && expectedPmfms.size() > 0){ - batchHasError = true; - CatchBatchValidationError error = new CatchBatchValidationError( - "tutti.persistence.batch.validation.pmfmNotFound", - _("tutti.persistence.batch.validation.pmfmNotFound", - batch.getId(), Arrays.toString(expectedPmfms.toArray()), "null"), - CatchBatchValidationError.GRAVITY_ERROR); - errors.add(error); - } - - if (!batchHasError && expectedReferenceTaxon == true && batch.getReferenceTaxon() == null) { - CatchBatchValidationError error = new CatchBatchValidationError( - "tutti.persistence.batch.validation.referenceTaxonNotFound", - _("tutti.persistence.batch.validation.referenceTaxonNotFound", batch.getId()), - CatchBatchValidationError.GRAVITY_ERROR); - errors.add(error); - } - - if (!batchHasError) { - validate(batch.getChildBatchs(), errors, treeLevel+1); - } - } - } - - protected void beanToEntity(SpeciesBatch source, - SortingBatch target, - String parentBatchId, - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch, - boolean copyIfNull) { - Preconditions.checkNotNull(source.getFishingOperation()); - Preconditions.checkNotNull(source.getFishingOperation().getId()); - - // Retrieve recorder department - Integer recorderDepartmentId = getRecorderDepartmentId(); - - // Create lists to store all updates, then remove not updated items - Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); - if (target.getQuantificationMeasurements() != null) { - notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); - } - Set<SortingMeasurement> notChangedSortingMeasurements = new HashSet<SortingMeasurement>(); - if (target.getSortingMeasurements() != null) { - notChangedSortingMeasurements.addAll(target.getSortingMeasurements()); - } - - // If parent and root need to be set - if (target.getId() == null - || target.getRootBatch() == null - || (target.getParentBatch() != null && !target.getParentBatch().getId().toString().equals(parentBatchId))) { - setBatchParents(source, target, parentBatchId, catchBatch); - } - - // RankOrder (initialize once, at creation) - if (target.getRankOrder() == null) { - // Start rank order at 3, because of special batches 'Biota' and 'Inert' - short rankOrder = (short) 3; - if (source.getParentBatch() != null && source.getParentBatch().getChildBatchs() != null) { - // TODO BL : vérifier cela (est-ce que l'item est ajouté à son père AVANT d'être passé au service ?) - rankOrder += (short) source.getParentBatch().getChildBatchs().size(); - } - target.setRankOrder(rankOrder); - } - - // Force subgroup count to '1', as Allegro - target.setSubgroupCount(1f); - - // Weight or SampleCategoryWeight - if (copyIfNull && source.getWeight() == null && source.getSampleCategoryWeight() == null) { - // Nothing to do : will be removed later, using notChangedSortingMeasurements - } else if (source.getSampleCategoryWeight() != null && source.getWeight() == null) { - QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, - enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getSampleCategoryWeight(), true); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } else if (source.getWeight() != null && source.getSampleCategoryWeight() == null) { - QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, - enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getWeight(), true); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } - - // Sampling Ratio - if (copyIfNull && (source.getSampleCategoryWeight() == null || source.getWeight() == null)) { - target.setSamplingRatio(null); - target.setSamplingRatioText(null); - } else if (source.getSampleCategoryWeight() != null && source.getWeight() != null) { - String samplingRatioText = source.getWeight() + "/" + source.getSampleCategoryWeight(); - samplingRatioText = samplingRatioText.replaceAll(",", "."); - target.setSamplingRatioText(samplingRatioText); - target.setSamplingRatio(source.getWeight() / source.getSampleCategoryWeight()); - QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, - enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getWeight(), true); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } - - // Sorting measurement - if (copyIfNull && (source.getSampleCategoryType() == null || source.getSampleCategoryValue() == null)) { - // Nothing to do : will be removed later, using notChangedSortingMeasurements - } else if (source.getSampleCategoryType() != null && source.getSampleCategoryValue() != null) { - Integer pmfmId = measurementHelper.sampleCategory2PmfmId(source.getSampleCategoryType()); - // Do not store sorting measurement if pmfm = SORTED (already store in an ancestor batch) - if (!pmfmId.equals(enumeration.PMFM_ID_SORTED_UNSORTED)) { - SortingMeasurement sortingMeasurement = measurementHelper.setSortingMeasurement(target, recorderDepartmentId, - source.getSampleCategoryType(), source.getSampleCategoryValue()); - notChangedSortingMeasurements.remove(sortingMeasurement); - } - } - - // Individual count - if (copyIfNull && source.getNumber() == null) { - target.setIndividualCount(null); - } else if (source.getNumber() != null) { - target.setIndividualCount(source.getNumber()); - } - - // Species - if (copyIfNull && (source.getSpecies() == null || parentBatchId != null)) { - target.setReferenceTaxon(null); - } else if (source.getSpecies() != null && parentBatchId == null) { - ReferenceTaxon referenceTaxon = load(ReferenceTaxonImpl.class, source.getSpecies().getReferenceTaxonId()); - target.setReferenceTaxon(referenceTaxon); - } - - // QualityFlag - if (source.isSpeciesToConfirm()) { - target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_DOUBTFUL)); - } else { - target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); - } - - // Comments - if (copyIfNull && source.getComment() == null) { - target.setComments(null); - } else if (source.getComment() != null) { - target.setComments(source.getComment()); - } - - // Exhaustive inventory (always true under a species batch) - target.setExhaustiveInventory(true); - - // Removed not changed measurements (in sorting and quantification measurement lists) - if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { - for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { - target.getQuantificationMeasurements().remove(qm); - } - } - if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { - for (SortingMeasurement sm : notChangedSortingMeasurements) { - target.getSortingMeasurements().remove(sm); - } - } - } - - public void setBatchParents(SpeciesBatch source, SortingBatch target, String parentBatchIdStr, - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch) { - - Preconditions.checkNotNull(target); - Preconditions.checkNotNull(source.getFishingOperation()); - Preconditions.checkNotNull(source.getFishingOperation().getId()); - - // Load existing parent and root - SortingBatch parentBatch = null; - if (parentBatchIdStr != null) { - parentBatch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(parentBatchIdStr)); - } - - // Or retrieve parent batch, from pmfm id - else { - // Retrieve category type - Integer pmfmId = measurementHelper.sampleCategory2PmfmId(source.getSampleCategoryType()); - if (pmfmId == null || !pmfmId.equals(enumeration.PMFM_ID_SORTED_UNSORTED)) { - throw new DataIntegrityViolationException(MessageFormat.format( - "A species batch with no parent should have a sampleCategoryType {0} (PMFM.ID={1})", - SampleCategoryEnum.sortedUnsorted.name(), - enumeration.PMFM_ID_SORTED_UNSORTED)); - } - Integer qualitativeValueId = convertSampleCategoryValueIntoQualitativeId(source.getSampleCategoryValue()); - - parentBatch = catchBatchDao.getSortingBatch(catchBatch.getChildBatchs(), - "pmfmId", pmfmId, qualitativeValueId, - "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); - - // Parent Batch - target.setParentBatch(parentBatch); - } - - - if (parentBatch == null) { - throw new DataIntegrityViolationException( - "Could not retrieve parent batch, for a given speciesBatch : invalid batch tree structure. Please make sure CatchBatch has been saved before to create a SpeciesBatch."); - } - - // Parent Batch - target.setParentBatch(parentBatch); - target.setRootBatch(catchBatch); - } - - Integer convertSampleCategoryValueIntoQualitativeId(Serializable value) { - if (value == null) - return null; - Integer qualitativeValueId = null; - if (value instanceof CaracteristicQualitativeValue) { - CaracteristicQualitativeValue cqValue = (CaracteristicQualitativeValue) value; - qualitativeValueId = Integer.valueOf(cqValue.getId()); - } else if (value instanceof String) { - qualitativeValueId = Integer.valueOf((String) value); - } - return qualitativeValueId; - } - - protected void setSampleCategoryQualitative(SpeciesBatch target, Integer pmfmId, Float numericalvalue, String alphanumericalValue, - Integer qualitativeValueId) { - // skip if null or corresponding to the SORTING_TYPE PMFM (Expèce, Benthos, Plancton, etc.) - if (pmfmId == null || pmfmId.equals(enumeration.PMFM_ID_SORTING_TYPE)) { - return; - } - - SampleCategoryEnum sampleCategory = referentialService.getSampleCategoryByPmfmId(pmfmId); - Preconditions.checkNotNull(sampleCategory, "Unable to find corresponding SampleCategoryEnum for PMFM.ID : " + pmfmId); - - target.setSampleCategoryType(sampleCategory); - if (numericalvalue != null) { - target.setSampleCategoryValue(numericalvalue); - return; - } - if (alphanumericalValue != null) { - target.setSampleCategoryValue(alphanumericalValue); - return; - } - - Caracteristic caracteristic = referentialService.getCaracteristic(pmfmId); - if (caracteristic == null || caracteristic.getCaracteristicType() != CaracteristicType.QUALITATIVE) { - return; - } - CaracteristicQualitativeValue value = null; - for (CaracteristicQualitativeValue qv : caracteristic.getQualitativeValue()) { - if (qualitativeValueId == Integer.parseInt(qv.getId())) { - value = qv; - break; - } - } - target.setSampleCategoryValue(value); - } - - protected void beanToEntity(SpeciesBatchFrequency source, SortingBatch target, SortingBatch parentBatch, short rankOrder, boolean copyIfNull) { - Preconditions.checkNotNull(source.getBatch()); - Preconditions.checkNotNull(source.getBatch().getId()); - - // Retrieve recorder department - Integer recorderDepartmentId = getRecorderDepartmentId(); - - // Create lists to store all updates, then remove not updated items - Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); - if (target.getQuantificationMeasurements() != null) { - notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); - } - Set<SortingMeasurement> notChangedSortingMeasurements = new HashSet<SortingMeasurement>(); - if (target.getSortingMeasurements() != null) { - notChangedSortingMeasurements.addAll(target.getSortingMeasurements()); - } - - // If parent and root need to be set - if (target.getId() == null - || target.getRootBatch() == null - || (target.getParentBatch() != null && !target.getParentBatch().getId().equals(parentBatch.getId()))) { - - target.setParentBatch(parentBatch); - target.setRootBatch(parentBatch.getRootBatch()); - } - - // RankOrder - target.setRankOrder(rankOrder); - - // Weight or SampleCategoryWeight - if (copyIfNull && source.getWeight() == null) { - // Nothing to do : will be removed later, using notChangedSortingMeasurements - } else if (source.getWeight() != null) { - QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, - enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getWeight(), true); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } - - // Sorting measurement - if (copyIfNull && (source.getLengthStepCaracteristic() == null || source.getLengthStep() == null)) { - // Nothing to do : will be removed later, using notChangedSortingMeasurements - } else if (source.getLengthStepCaracteristic() != null && source.getLengthStep() != null) { - Integer pmfmId = Integer.valueOf(source.getLengthStepCaracteristic().getId()); - SortingMeasurement sortingMeasurement = measurementHelper.setSortingMeasurement(target, recorderDepartmentId, pmfmId, - source.getLengthStep()); - notChangedSortingMeasurements.remove(sortingMeasurement); - } - - // Individual count - if (copyIfNull && source.getNumber() == null) { - target.setIndividualCount(null); - } else if (source.getNumber() != null) { - target.setIndividualCount(source.getNumber()); - } - - // Species - target.setReferenceTaxon(null); - - // QualityFlag - target.setQualityFlag(parentBatch.getQualityFlag()); - - // Comments - if (copyIfNull && source.getComment() == null) { - target.setComments(null); - } else if (source.getComment() != null) { - target.setComments(source.getComment()); - } - - // Exhaustive inventory (always true under a species batch) - target.setExhaustiveInventory(true); - - // Removed not changed measurements (in sorting and quantification measurement lists) - if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { - for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { - target.getQuantificationMeasurements().remove(qm); - } - } - if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { - for (SortingMeasurement sm : notChangedSortingMeasurements) { - target.getSortingMeasurements().remove(sm); - } - } - } - - protected UIWeight convertDatabase2UI(Float weight, Float samplingRatio, String samplingRatioText) { - UIWeight result = new UIWeight(); - - // Weight & sampleCategory Weight - if (samplingRatio == null) { - result.sampleCategoryWeight = weight; - } else if (weight != null) { - String startStr = weight.toString().replace(',', '.') + "/"; - if (samplingRatioText != null && samplingRatioText.startsWith(startStr)) { - String weightStr = samplingRatioText.substring(startStr.length()); - if (weightStr != null && !weightStr.isEmpty()) { - result.sampleCategoryWeight = Float.parseFloat(weightStr); - result.weight = weight; - } - } else { - result.sampleCategoryWeight = weight; - } - } - return result; - } - - static class UIWeight { - Float sampleCategoryWeight = null; - - Float weight = null; - } - - protected void beanToEntity(CatchBatch source, - fr.ifremer.adagio.core.dao.data.batch.CatchBatch target, - boolean copyIfNull) { - Preconditions.checkNotNull(source.getFishingOperation()); - Preconditions.checkNotNull(source.getFishingOperation().getId()); - - // Retrieve recorder department - Integer recorderDepartmentId = getRecorderDepartmentId(); - - // First initialization (when created) - Integer fishingOperationId = Integer.valueOf(source.getFishingOperation().getId()); - target.setFishingOperation(load(FishingOperationImpl.class, fishingOperationId)); - - target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); - target.setRankOrder((short) 1); - target.setSynchronizationStatus(SynchronizationStatus.DIRTY.getValue()); - - // Create lists to store all updates, then remove not updated items - Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); - if (target.getQuantificationMeasurements() != null) { - notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); - } - - // Total Weight - if (copyIfNull && source.getCatchTotalWeight() == null) { - // Nothing to do : will be removed later, using notChangedQuantificationMeasurements - } else if (source.getCatchTotalWeight() != null) { - QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, - enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getCatchTotalWeight(), true); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } - - // Removed not changed measurements (in sorting and quantification measurement lists) - if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { - for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { - target.getQuantificationMeasurements().remove(qm); - } - } - Map<Integer, SortingBatch> catchBatchChilds = getChildsMap(target, enumeration.PMFM_ID_SORTED_UNSORTED); - - // ----------------------------------------------------------------------------- - // Sorted Vrac - // ----------------------------------------------------------------------------- - { - SortingBatch batch = catchBatchChilds.get(enumeration.QUALITATIVE_VRAC_ID); - if (batch == null) { - batch = SortingBatch.Factory.newInstance(); - target.getChildBatchs().add(batch); - } - beanToEntitySortingBatch(target, target, batch, recorderDepartmentId, - enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, - source.getCatchTotalSortedCarousselWeight(), source.getCatchTotalSortedTremisWeight(), - copyIfNull); - batch.setRankOrder((short) 1); - - // Manage childs : - { - Map<Integer, SortingBatch> batchChilds = getChildsMap(batch, enumeration.PMFM_ID_SORTING_TYPE); - - // ----------------------------------------------------------------------------- - // Sorted Vrac / Species - // ----------------------------------------------------------------------------- - SortingBatch speciesBatch = batchChilds.get(enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); - if (speciesBatch == null) { - speciesBatch = SortingBatch.Factory.newInstance(); - if (batch.getChildBatchs() == null) { - batch.setChildBatchs(Lists.newArrayList((Batch) speciesBatch)); - } else { - batch.getChildBatchs().add(speciesBatch); - } - } - beanToEntitySortingBatch(target, batch, speciesBatch, recorderDepartmentId, - enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, - source.getSpeciesTotalSampleSortedWeight(), source.getSpeciesTotalSortedWeight(), - copyIfNull); - speciesBatch.setRankOrder((short) 1); - - { - - // ----------------------------------------------------------------------------- - // Sorted Vrac / Species / Alive not itemized - // ----------------------------------------------------------------------------- - SortingBatch aliveNotItemizedBatch = catchBatchDao.getSortingBatch(speciesBatch.getChildBatchs(), "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_LIFE); - if (aliveNotItemizedBatch == null) { - aliveNotItemizedBatch = SortingBatch.Factory.newInstance(); - if (speciesBatch.getChildBatchs() == null) { - speciesBatch.setChildBatchs(Lists.newArrayList((Batch) aliveNotItemizedBatch)); - } else { - speciesBatch.getChildBatchs().add(aliveNotItemizedBatch); - } - } - beanToEntityReferenceTaxonBatch(target, speciesBatch, aliveNotItemizedBatch, recorderDepartmentId, - enumeration.REFERENCE_TAXON_ID_LIFE, - source.getSpeciesTotalLivingNotItemizedWeight(), null, - copyIfNull); - aliveNotItemizedBatch.setRankOrder((short) 1); - - // ----------------------------------------------------------------------------- - // Sorted Vrac / Species / Inert (not alive) - // ----------------------------------------------------------------------------- - SortingBatch inertBatch = catchBatchDao.getSortingBatch(speciesBatch.getChildBatchs(), "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_INERT); - if (inertBatch == null) { - inertBatch = SortingBatch.Factory.newInstance(); - speciesBatch.getChildBatchs().add(inertBatch); - } - beanToEntityReferenceTaxonBatch(target, speciesBatch, inertBatch, recorderDepartmentId, - enumeration.REFERENCE_TAXON_ID_INERT, - source.getSpeciesTotalInertWeight(), null, - copyIfNull); - inertBatch.setRankOrder((short) 2); - } - } - // TODO BL : benthos, plancton, macro déchet... - } - - // ----------------------------------------------------------------------------- - // Sorted Hors Vrac - // ----------------------------------------------------------------------------- - { - SortingBatch batch = catchBatchChilds.get(enumeration.QUALITATIVE_HORS_VRAC_ID); - if (batch == null) { - batch = SortingBatch.Factory.newInstance(); - target.getChildBatchs().add(batch); - } - beanToEntitySortingBatch(target, target, batch, recorderDepartmentId, - enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, - source.getCatchTotalUnsortedWeight(), null, - copyIfNull); - batch.setRankOrder((short) 2); - - // Manage childs : - { - Map<Integer, SortingBatch> batchChilds = getChildsMap(batch, enumeration.PMFM_ID_SORTING_TYPE); - - // Species : - SortingBatch speciesBatch = batchChilds.get(enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); - if (speciesBatch == null) { - speciesBatch = SortingBatch.Factory.newInstance(); - if (batch.getChildBatchs() == null) { - batch.setChildBatchs(Lists.newArrayList((Batch) speciesBatch)); - } else { - batch.getChildBatchs().add(speciesBatch); - } - } - beanToEntitySortingBatch(target, batch, speciesBatch, recorderDepartmentId, - enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, - source.getSpeciesTotalUnsortedWeight(), null, - copyIfNull); - speciesBatch.setRankOrder((short) 1); - } - - // TODO BL : benthos, plancton, macro déchet... - } - - // ----------------------------------------------------------------------------- - // Unsorted (=rejected) - // ----------------------------------------------------------------------------- - // Unsorted : - SortingBatch unsortedBatch = catchBatchChilds.get(enumeration.QUALITATIVE_UNSORTED_ID); - if (unsortedBatch == null) { - unsortedBatch = SortingBatch.Factory.newInstance(); - target.getChildBatchs().add(unsortedBatch); - } - beanToEntitySortingBatch(target, target, unsortedBatch, recorderDepartmentId, - enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_UNSORTED_ID, - source.getCatchTotalRejectedWeight(), null, - copyIfNull); - unsortedBatch.setRankOrder((short) 3); - - } - - protected Map<Integer, SortingBatch> getChildsMap(Batch parentBatch, Integer pmfmId) { - Map<Integer, SortingBatch> batchByQualitativeValueId = new HashMap<Integer, SortingBatch>(); - if (parentBatch.getChildBatchs() == null) { - return batchByQualitativeValueId; - } - for (Batch childBatch : parentBatch.getChildBatchs()) { - SortingBatch childSortingBatch = (SortingBatch) childBatch; - SortingMeasurement sm = measurementHelper.getSortingMeasurement((SortingBatch) childBatch, pmfmId, null, false); - if (sm != null && sm.getQualitativeValue() != null && sm.getQualitativeValue().getId() != null) { - batchByQualitativeValueId.put(sm.getQualitativeValue().getId(), childSortingBatch); - } - } - return batchByQualitativeValueId; - } - - /** - * Retrieve child batchs if species is "Life" or "No life" - * (need to retrieve: speciesTotalLivingNotItemizedWeight and speciesTotalInertWeight) - * - * @param parentBatch - * @return - */ - protected Map<Integer, SortingBatch> getChildAliveNotSortedOrInert(Batch parentBatch) { - Map<Integer, SortingBatch> batchByQualitativeValueId = new HashMap<Integer, SortingBatch>(); - if (parentBatch.getChildBatchs() == null) { - return batchByQualitativeValueId; - } - for (Batch childBatch : parentBatch.getChildBatchs()) { - SortingBatch childSortingBatch = (SortingBatch) childBatch; - if (childSortingBatch.getReferenceTaxon() != null && childSortingBatch.getId().intValue() < 0) { - if (enumeration.REFERENCE_TAXON_ID_LIFE.equals(childSortingBatch.getId())) { - batchByQualitativeValueId.put(enumeration.REFERENCE_TAXON_ID_LIFE, childSortingBatch); - } else if (enumeration.REFERENCE_TAXON_ID_LIFE.equals(childSortingBatch.getId())) { - batchByQualitativeValueId.put(enumeration.REFERENCE_TAXON_ID_LIFE, childSortingBatch); - } - } - } - return batchByQualitativeValueId; - } - - protected void beanToEntitySortingBatch( - fr.ifremer.adagio.core.dao.data.batch.CatchBatch rootBatch, - fr.ifremer.adagio.core.dao.data.batch.Batch parentBatch, - fr.ifremer.adagio.core.dao.data.batch.SortingBatch target, - Integer recorderDepartmentId, - Integer sortingPmfmId, - Integer sortingQualitativeValueId, - Float weight, - Float sampleWeight, - boolean copyIfNull) { - - // Create lists to store all updates, then remove not updated items - Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); - if (target.getQuantificationMeasurements() != null) { - notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); - } - Set<SortingMeasurement> notChangedSortingMeasurements = new HashSet<SortingMeasurement>(); - if (target.getSortingMeasurements() != null) { - notChangedSortingMeasurements.addAll(target.getSortingMeasurements()); - } - - // Some mandatory properties : - target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); - target.setRootBatch(rootBatch); - target.setParentBatch(parentBatch); - target.setExhaustiveInventory(true); - - // No taxon or taxon group - target.setReferenceTaxon(null); - target.setTaxonGroup(null); - - // Sorting measurement - if (copyIfNull && (sortingPmfmId == null || sortingQualitativeValueId == null)) { - // Nothing to do : will be removed later, using notChangedSortingMeasurements - } else if (sortingPmfmId != null && sortingQualitativeValueId != null) { - SortingMeasurement sm = measurementHelper.setSortingMeasurement(target, recorderDepartmentId, sortingPmfmId, sortingQualitativeValueId); - notChangedSortingMeasurements.remove(sm); - } - - // Sampling Ratio - if (copyIfNull && (sampleWeight == null || weight == null)) { - target.setSamplingRatio(null); - target.setSamplingRatioText(null); - } else if (sampleWeight != null && weight != null) { - String samplingRatioText = weight + "/" + sampleWeight; - samplingRatioText = samplingRatioText.replaceAll(",", "."); - target.setSamplingRatioText(samplingRatioText); - target.setSamplingRatio(weight / sampleWeight); - } - - // Weight - if (copyIfNull && (sampleWeight == null && weight == null)) { - // Nothing to do : will be removed later, using notChangedQuantificationMeasurements - } else if (sampleWeight != null || weight != null) { - Float batchReferenceWeight = weight; - if (batchReferenceWeight == null) { - batchReferenceWeight = sampleWeight; - } - QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, - enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, batchReferenceWeight, true); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } - - // Removed not changed measurements (in sorting and quantification measurement lists) - if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { - for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { - target.getQuantificationMeasurements().remove(qm); - } - } - if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { - for (SortingMeasurement sm : notChangedSortingMeasurements) { - target.getSortingMeasurements().remove(sm); - } - } - } - - protected void beanToEntityReferenceTaxonBatch( - fr.ifremer.adagio.core.dao.data.batch.CatchBatch rootBatch, - fr.ifremer.adagio.core.dao.data.batch.Batch parentBatch, - fr.ifremer.adagio.core.dao.data.batch.SortingBatch target, - Integer recorderDepartmentId, - Integer referenceTaxonId, - Float weight, - Float sampleWeight, - boolean copyIfNull) { - - // Create lists to store all updates, then remove not updated items - Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); - if (target.getQuantificationMeasurements() != null) { - notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); - } - Set<SortingMeasurement> notChangedSortingMeasurements = new HashSet<SortingMeasurement>(); - if (target.getSortingMeasurements() != null) { - notChangedSortingMeasurements.addAll(target.getSortingMeasurements()); - } - - // Some mandatory properties : - target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); - target.setRootBatch(rootBatch); - target.setParentBatch(parentBatch); - target.setExhaustiveInventory(true); - - // Reference taxon - target.setReferenceTaxon(load(ReferenceTaxonImpl.class, referenceTaxonId)); - target.setTaxonGroup(null); - - // Sampling Ratio - if (copyIfNull && (sampleWeight == null || weight == null)) { - target.setSamplingRatio(null); - target.setSamplingRatioText(null); - } else if (sampleWeight != null && weight != null) { - String samplingRatioText = weight + "/" + sampleWeight; - samplingRatioText = samplingRatioText.replaceAll(",", "."); - target.setSamplingRatioText(samplingRatioText); - target.setSamplingRatio(weight / sampleWeight); - } - - // Weight - if (copyIfNull && (sampleWeight == null && weight == null)) { - // Nothing to do : will be removed later, using notChangedQuantificationMeasurements - } else if (sampleWeight != null || weight != null) { - Float batchReferenceWeight = weight; - if (batchReferenceWeight == null) { - batchReferenceWeight = sampleWeight; - } - QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, - enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, batchReferenceWeight, true); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } - - // Removed not changed measurements (in sorting and quantification measurement lists) - if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { - for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { - target.getQuantificationMeasurements().remove(qm); - } - } - if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { - for (SortingMeasurement sm : notChangedSortingMeasurements) { - target.getSortingMeasurements().remove(sm); - } - } - } - - protected Integer getRecorderDepartmentId() { - // TODO BL : voir si on peut récupérer le departement (du 1er saisisseur ?) - return enumeration.DEPARTMENT_ID_UNKNOWN_RECORDER_DEPARTMENT; - } -} +package fr.ifremer.tutti.persistence.service; + +/* + * #%L + * Tutti :: Persistence + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + + +import static org.nuiton.i18n.I18n._; + +import java.io.Serializable; +import java.text.MessageFormat; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collection; +import java.util.HashMap; +import java.util.HashSet; +import java.util.Iterator; +import java.util.List; +import java.util.Map; +import java.util.Set; + +import javax.annotation.Resource; + +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.hibernate.FlushMode; +import org.hibernate.type.IntegerType; +import org.springframework.cache.annotation.CacheEvict; +import org.springframework.dao.DataIntegrityViolationException; +import org.springframework.dao.DataRetrievalFailureException; +import org.springframework.stereotype.Service; + +import com.google.common.base.Preconditions; +import com.google.common.collect.Lists; + +import fr.ifremer.adagio.core.dao.data.batch.Batch; +import fr.ifremer.adagio.core.dao.data.batch.CatchBatchExtendDao; +import fr.ifremer.adagio.core.dao.data.batch.SortingBatch; +import fr.ifremer.adagio.core.dao.data.batch.SortingBatchDao; +import fr.ifremer.adagio.core.dao.data.batch.denormalized.DenormalizedBatchDao; +import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidationError; +import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidationException; +import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidator; +import fr.ifremer.adagio.core.dao.data.measure.QuantificationMeasurement; +import fr.ifremer.adagio.core.dao.data.measure.SortingMeasurement; +import fr.ifremer.adagio.core.dao.data.operation.FishingOperationImpl; +import fr.ifremer.adagio.core.dao.referential.QualityFlagImpl; +import fr.ifremer.adagio.core.dao.referential.taxon.ReferenceTaxon; +import fr.ifremer.adagio.core.dao.referential.taxon.ReferenceTaxonImpl; +import fr.ifremer.adagio.core.dao.technical.synchronization.SynchronizationStatus; +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import fr.ifremer.tutti.persistence.entities.data.SampleCategoryEnum; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicType; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.persistence.service.measure.MeasurementPersistenceHelper; + +@Service("batchPersistenceService") +public class BatchPersistenceServiceImpl + extends AbstractPersistenceService implements BatchPersistenceService, CatchBatchValidator + { + + /** Logger. */ + private static final Log log = + LogFactory.getLog(BatchPersistenceServiceImpl.class); + + @Resource(name = "referentialPersistenceService") + protected ReferentialPersistenceService referentialService; + + @Resource(name = "denormalizedBatchDao") + protected DenormalizedBatchDao denormalizedBatchDao; + + @Resource(name = "sortingBatchDao") + protected SortingBatchDao sortingBatchDao; + + @Resource(name = "catchBatchDao") + protected CatchBatchExtendDao catchBatchDao; + + @Resource(name = "measurementPersistenceHelper") + protected MeasurementPersistenceHelper measurementHelper; + + @Override + public void init() { + super.init(); + catchBatchDao.registerCatchBatchValidator(this); + } + + @Override + public void close() { + catchBatchDao.unregisterCatchBatchValidator(this); + super.close(); + } + + @Override + public boolean isEnable(fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch) { + // Apply validation only on catch batch for fishingOperation + return (catchBatch.getFishingOperation() != null); + } + + @Override + public List<CatchBatchValidationError> validate(fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch) { + List<CatchBatchValidationError> errors = Lists.newArrayList(); + validate(catchBatch.getChildBatchs(), errors, 1); + return errors; + } + + @Override + public CatchBatch getCatchBatchFromFishingOperation(String fishingOperationId) { + Preconditions.checkNotNull(fishingOperationId); + + Integer catchBatchId = catchBatchDao.getIdByFishingOperationId(Integer.valueOf(fishingOperationId)); + + fr.ifremer.adagio.core.dao.data.batch.CatchBatch source; + try { + source = catchBatchDao.loadFullTree(catchBatchId, true, true); + } catch (CatchBatchValidationException e) { + throw new DataRetrievalFailureException("Invalid batch tree structure, for fishing operation id=" + fishingOperationId, e); + } + + CatchBatch result = new CatchBatch(); + result.setId(source.getId().toString()); + result.setCatchTotalWeight(source.getWeight()); + + // Vrac + SortingBatch vracBatch = catchBatchDao.getSortingBatch(source.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID); + result.setCatchTotalSortedCarousselWeight(vracBatch.getWeight()); + result.setCatchTotalSortedTremisWeight(vracBatch.getWeightBeforeSampling()); + { + // Species + SortingBatch speciesBatch = catchBatchDao.getSortingBatch(vracBatch.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + + result.setSpeciesTotalSampleSortedWeight(speciesBatch.getWeight()); + result.setSpeciesTotalSortedWeight(speciesBatch.getWeightBeforeSampling()); + + { + // Inert + SortingBatch inertBatch = catchBatchDao.getSortingBatch(speciesBatch.getChildBatchs(), + "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_INERT); + result.setSpeciesTotalInertWeight(inertBatch.getWeight()); + + // Alive no itemized + SortingBatch livingNotItemizedBatch = catchBatchDao.getSortingBatch(speciesBatch.getChildBatchs(), + "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_LIFE); + result.setSpeciesTotalLivingNotItemizedWeight(livingNotItemizedBatch.getWeight()); + } + + // TODO : Benthos, Plancton... + } + + // Hors Vrac + SortingBatch horsVracBatch = catchBatchDao.getSortingBatch(source.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID); + result.setCatchTotalUnsortedWeight(horsVracBatch.getWeight()); + { + // Species + SortingBatch speciesBatch = catchBatchDao.getSortingBatch(horsVracBatch.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + + result.setSpeciesTotalUnsortedWeight(speciesBatch.getWeight()); + + // TODO : Benthos, Plancton... + } + + // Non trié + SortingBatch unsortedBatch = catchBatchDao.getSortingBatch(source.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_UNSORTED_ID); + result.setCatchTotalRejectedWeight(unsortedBatch.getWeight()); + + return result; + } + + @Override + + public CatchBatch createCatchBatch(CatchBatch bean) { + Preconditions.checkNotNull(bean); + Preconditions.checkArgument(bean.getId() == null); + Preconditions.checkNotNull(bean.getFishingOperation()); + Preconditions.checkNotNull(bean.getFishingOperation().getId()); + + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = fr.ifremer.adagio.core.dao.data.batch.CatchBatch.Factory.newInstance(); + beanToEntity(bean, catchBatch, true); + catchBatch = catchBatchDao.create(catchBatch); + bean.setId(String.valueOf(catchBatch.getId())); + + // Link to fishing operation + getCurrentSession().flush(); + Integer fishingOperationId = Integer.valueOf(bean.getFishingOperation().getId()); + int rowUpdated = queryUpdate("updateFishingOperationCatchBatch", + "fishingOperationId", IntegerType.INSTANCE, fishingOperationId, + "catchBatchId", IntegerType.INSTANCE, catchBatch.getId()); + if (rowUpdated == 0) { + throw new DataIntegrityViolationException("Could not attach catch batch to the given operation : operation was not found."); + } + + return bean; + } + + @Override + @CacheEvict(value = "batchTree", key="#bean.fishingOperation.id") + public CatchBatch saveCatchBatch(CatchBatch bean) { + + Preconditions.checkNotNull(bean); + Preconditions.checkNotNull(bean.getId()); + + getCurrentSession().enableFetchProfile("batch-with-childs"); + getCurrentSession().setFlushMode(FlushMode.COMMIT); + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.load(Integer.valueOf(bean.getId())); + if (catchBatch == null) { + throw new DataRetrievalFailureException("Could not retrieve catch batch with id=" + bean.getId()); + } + + beanToEntity(bean, catchBatch, true); + catchBatchDao.update(catchBatch); + getCurrentSession().flush(); + + return bean; + } + + @Override + public List<SpeciesBatch> getAllRootSpeciesBatch(String fishingOperationId) { + + // Load batch tree + Integer catchBatchId = catchBatchDao.getIdByFishingOperationId(Integer.valueOf(fishingOperationId)); + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); + + List<SpeciesBatch> result = new ArrayList<SpeciesBatch>(); + + // Vrac / Species + SortingBatch vracSpeciesBatch = catchBatchDao.getSortingBatch(catchBatch.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, + "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + for (Iterator<Batch> iterator = vracSpeciesBatch.getChildBatchs().iterator(); iterator.hasNext();) { + SortingBatch source = (SortingBatch) iterator.next(); + + // evict some special batches : Life (or Biota) and Inert + if (source.getReferenceTaxon() != null + && enumeration.REFERENCE_TAXON_ID_LIFE.equals(source.getReferenceTaxon().getId()) == false + && enumeration.REFERENCE_TAXON_ID_INERT.equals(source.getReferenceTaxon().getId()) == false) { + SpeciesBatch target = new SpeciesBatch(); + + entityToBean(source, target); + result.add(target); + } + } + + // Hors-Vrac / Species + SortingBatch horsVracSpeciesBatch = catchBatchDao.getSortingBatch(catchBatch.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, + "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + for (Iterator<Batch> iterator = horsVracSpeciesBatch.getChildBatchs().iterator(); iterator.hasNext();) { + SortingBatch source = (SortingBatch) iterator.next(); + + SpeciesBatch target = new SpeciesBatch(); + + entityToBean(source, target); + result.add(target); + } + + return result; + } + + protected SpeciesBatch entityToBean(SortingBatch source, SpeciesBatch target) { + + target.setId(source.getId().toString()); + + // Individual count + target.setNumber(source.getIndividualCount()); + + // Convert database weight (and sampling ratio) into UI weight and sampleCategoryWeight + if (source.getWeight() != null && source.getWeightBeforeSampling() == null) { + target.setSampleCategoryWeight(source.getWeight()); + } + else { + target.setWeight(source.getWeight()); + target.setSampleCategoryWeight(source.getWeightBeforeSampling()); + } + + // Comments + target.setComment(source.getComments()); + + // Sample category type (only one is applied) + SortingMeasurement sm = null; + if (source.getSortingMeasurements().size() == 1) { + sm = source.getSortingMeasurements().iterator().next(); + } + else if (source.getReferenceTaxon() != null && source.getReferenceTaxon().getId() != null){ + sm = measurementHelper.getInheritedSortingMeasurement(source, enumeration.PMFM_ID_SORTED_UNSORTED); + } + if (sm != null) { + SampleCategoryEnum sampleCategory = referentialService.getSampleCategoryByPmfmId(sm.getPmfm().getId()); + if (sampleCategory != null) { + setSampleCategoryQualitative(target, sm.getPmfm().getId(), sm.getNumericalValue(), sm.getAlphanumericalValue(), sm.getQualitativeValue().getId()); + } + } + + // Species + Integer referenceTaxonId = source.getInheritedReferenceTaxonId(); + if (referenceTaxonId == null && source.getReferenceTaxon() != null) { + referenceTaxonId = source.getReferenceTaxon().getId(); + } + if (referenceTaxonId != null) { + // TODO : add cache on getSpeciesByReferenceTaxonId + Species species = referentialService.getSpeciesByReferenceTaxonId(referenceTaxonId); + target.setSpecies(species); + } + + if (target.getSampleCategoryType() != null && source.getChildBatchs().size() > 0) { + List<SpeciesBatch> targetChilds = Lists.newArrayList(); + for (Iterator<Batch> iterator = source.getChildBatchs().iterator(); iterator.hasNext();) { + SortingBatch sourceChild = (SortingBatch) iterator.next(); + SpeciesBatch targetChild = new SpeciesBatch(); + entityToBean(sourceChild, targetChild); + if (targetChild.getSampleCategoryValue() != null) { + targetChilds.add(targetChild); + targetChild.setParentBatch(target); + } + } + target.setChildBatchs(targetChilds); + } + + return target; + } + + @Override + public SpeciesBatch createSpeciesBatch(SpeciesBatch bean, + String parentBatchId) { + Preconditions.checkNotNull(bean); + Preconditions.checkArgument(bean.getId() == null); + Preconditions.checkNotNull(bean.getSpecies()); + Preconditions.checkNotNull(bean.getSpecies().getId()); + Preconditions.checkNotNull(bean.getFishingOperation()); + Preconditions.checkNotNull(bean.getFishingOperation().getId()); + + getCurrentSession().setFlushMode(FlushMode.COMMIT); + + // Load full batch tree + Integer catchBatchId = catchBatchDao.getIdByFishingOperationId(Integer.valueOf(bean.getFishingOperation().getId())); + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); + + SortingBatch batch = SortingBatch.Factory.newInstance(); + beanToEntity(bean, batch, parentBatchId, catchBatch, true); + batch = sortingBatchDao.create(batch); + + bean.setId(String.valueOf(batch.getId())); + + getCurrentSession().flush(); + + return bean; + } + + @Override + public SpeciesBatch saveSpeciesBatch(SpeciesBatch bean) { + Preconditions.checkNotNull(bean); + Preconditions.checkNotNull(bean.getId()); + + // Load full batch tree + Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(Integer.valueOf(bean.getId())); + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); + + getCurrentSession().setFlushMode(FlushMode.COMMIT); + + SortingBatch batch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(bean.getId())); + String parentBatchId = null; + if (bean.getParentBatch() != null) { + parentBatchId = bean.getParentBatch().getId(); + } + beanToEntity(bean, batch, parentBatchId, catchBatch, true); + sortingBatchDao.update(batch); + getCurrentSession().flush(); + + return bean; + } + + @Override + public void deleteSpeciesBatch(String id) { + Preconditions.checkNotNull(id); + + getCurrentSession().setFlushMode(FlushMode.COMMIT); + + catchBatchDao.removeWithChildren(Integer.valueOf(id)); + + getCurrentSession().flush(); + } + + public void deleteSpeciesSubBatch(String id) { + deleteSpeciesBatch(id); + } + + public void changeSpeciesBatchSpecies(String batchId, Species species) { + Preconditions.checkNotNull(batchId); + Preconditions.checkNotNull(species); + Preconditions.checkNotNull(species.getReferenceTaxonId()); + + if (log.isDebugEnabled()) { + log.debug("Changing species for batch id=" + batchId); + } + + int rowUpdated = queryUpdate("updateBatchSpecies", + "batchId", IntegerType.INSTANCE, Integer.valueOf(batchId), + "referenceTaxonId", IntegerType.INSTANCE, species.getReferenceTaxonId()); + Preconditions.checkArgument(rowUpdated == 1, "Unable to update operation, to be linked with catch batch."); + } + + public List<SpeciesBatchFrequency> getAllSpeciesBatchFrequency( + String speciesBatchId) { + List<SpeciesBatchFrequency> results = Lists.newArrayList(); + + Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(Integer.valueOf(speciesBatchId)); + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); + + if (catchBatchId == null) { + return results; + } + + SortingBatch sortingBatch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(speciesBatchId)); + + for (Iterator<Batch> iterator = sortingBatch.getChildBatchs().iterator(); iterator.hasNext();) { + SortingBatch source = (SortingBatch) iterator.next(); + SpeciesBatchFrequency target = new SpeciesBatchFrequency(); + + entityToBean(source, target); + results.add(target); + } + return results; + } + + protected void entityToBean(SortingBatch source, SpeciesBatchFrequency target) { + + target.setId(source.getId().toString()); + + target.setNumber(source.getIndividualCount()); + target.setWeight(source.getWeight()); + target.setComment(source.getComments()); + + // Length step category + if (source.getSortingMeasurements().size() == 1) { + SortingMeasurement sm = source.getSortingMeasurements().iterator().next(); + if (sm.getPmfm() != null && sm.getPmfm().getId() != null) { + Caracteristic lengthStepCaracteristic = referentialService.getCaracteristic(sm.getPmfm().getId()); + target.setLengthStepCaracteristic(lengthStepCaracteristic); + } + + // Length + target.setLengthStep(sm.getNumericalValue()); + } + } + + public List<SpeciesBatchFrequency> saveSpeciesBatchFrequency( + String speciesBatchId, List<SpeciesBatchFrequency> frequencies) { + Preconditions.checkNotNull(speciesBatchId); + Preconditions.checkNotNull(frequencies); + + if (frequencies.size() == 0) { + return frequencies; + } + getCurrentSession().setFlushMode(FlushMode.COMMIT); + + Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(Integer.valueOf(speciesBatchId)); + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); + + if (catchBatch == null) { + return frequencies; + } + + // Retrieve parent + SortingBatch parentBatch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(speciesBatchId)); + + // Remember child ids, to remove unchanged item (see at bottom in this method) + List<Integer> notUpdatedChildIds = Lists.newArrayList(); + for (Iterator<Batch> iterator = parentBatch.getChildBatchs().iterator(); iterator.hasNext();) { + SortingBatch sortingBatch = (SortingBatch) iterator.next(); + notUpdatedChildIds.add(sortingBatch.getId()); + } + + short rankOrder = 0; + String pmfmId = null; + List<SortingBatch> batchsToUpdate = Lists.newArrayList(); + for (SpeciesBatchFrequency source : frequencies) { + rankOrder++; + + // Check that all frequencies have the same length PMFM + if (pmfmId == null) { + source.getLengthStepCaracteristic().getId(); + } else if (!pmfmId.equals(source.getLengthStepCaracteristic().getId())) { + throw new DataIntegrityViolationException("Batch frequencies under one Speciesbatch must have all the same lengthStepCaracteristic"); + } + + // Not existing batch + SortingBatch target = null; + if (source.getId() == null) { + target = SortingBatch.Factory.newInstance(); + + // Fill the sorting batch from the source + beanToEntity(source, target, parentBatch, rankOrder, true); + + // Create the targeted batch, then update the source id + sortingBatchDao.create(target); + source.setId(target.getId().toString()); + } + + // Existing batch + else { + target = sortingBatchDao.load(Integer.valueOf(source.getId())); + + // Fill the sorting batch from the source + beanToEntity(source, target, parentBatch, rankOrder, true); + + // Add the batch into a list (will be update later, using this list) + batchsToUpdate.add(target); + + notUpdatedChildIds.remove(target.getId()); + } + } + + // If some batchs need to be update, do it + if (batchsToUpdate.size() > 0) { + sortingBatchDao.update(batchsToUpdate); + } + + if (notUpdatedChildIds.size() > 0) { + for (Iterator<Integer> iterator = notUpdatedChildIds.iterator(); iterator.hasNext();) { + Integer batchId = iterator.next(); + catchBatchDao.removeWithChildren(batchId); + } + } + + getCurrentSession().flush(); + + return frequencies; + } + + // ------------------------------------------------------------------------// + // -- Internal methods --// + // ------------------------------------------------------------------------// + + protected void validate(Collection<Batch> batchs, List<CatchBatchValidationError> errors, int treeLevel) { + + List<Integer> expectedPmfms = null; + boolean expectedReferenceTaxon = false; + // First tree level : should have pmfm SORTED (Vrac, Hors Vrac, Non trié) + if (treeLevel == 1) { + expectedPmfms = Lists.newArrayList(enumeration.PMFM_ID_SORTED_UNSORTED); + } + // Second tree level : should have pmfm SORTING_TYPE (Species, Benthos...) + else if (treeLevel == 2) { + expectedPmfms = Lists.newArrayList(enumeration.PMFM_ID_SORTING_TYPE); + } + else if (treeLevel == 3) { + expectedReferenceTaxon = true; + } + else if (treeLevel > 3) { + expectedPmfms = referentialService.getSampleCategoryIds(); + expectedPmfms.remove(enumeration.PMFM_ID_SORTED_UNSORTED); + } + + // First level : should be only PMFM=SORTED + for (Iterator<Batch> iterator = batchs.iterator(); iterator.hasNext();) { + SortingBatch batch = (SortingBatch) iterator.next(); + boolean batchHasError = false; + + // For all sorting measurements + if (batch.getSortingMeasurements() != null && batch.getSortingMeasurements().size() > 0) { + for (Iterator<SortingMeasurement> iterator2 = batch.getSortingMeasurements().iterator(); iterator2.hasNext();) { + SortingMeasurement sm = iterator2.next(); + Integer pmfmId = sm.getPmfm().getId(); + if (expectedReferenceTaxon) { + CatchBatchValidationError error = new CatchBatchValidationError( + "tutti.persistence.batch.validation.onlyTaxonButPmfmFound", + _("tutti.persistence.batch.validation.onlyTaxonButPmfmFound", batch.getId(), pmfmId), + CatchBatchValidationError.GRAVITY_ERROR); + errors.add(error); + } + else if (expectedPmfms.contains(pmfmId) == false) { + if (sm.getNumericalValue() == null || batch.getChildBatchs().size() > 0) { + batchHasError = true; + CatchBatchValidationError error = new CatchBatchValidationError( + "tutti.persistence.batch.validation.pmfmNotFound", + _("tutti.persistence.batch.validation.pmfmNotFound", + batch.getId(), Arrays.toString(expectedPmfms.toArray()), pmfmId), + CatchBatchValidationError.GRAVITY_ERROR); + errors.add(error); + } + } + } + } + else if (expectedPmfms != null && expectedPmfms.size() > 0){ + batchHasError = true; + CatchBatchValidationError error = new CatchBatchValidationError( + "tutti.persistence.batch.validation.pmfmNotFound", + _("tutti.persistence.batch.validation.pmfmNotFound", + batch.getId(), Arrays.toString(expectedPmfms.toArray()), "null"), + CatchBatchValidationError.GRAVITY_ERROR); + errors.add(error); + } + + if (!batchHasError && expectedReferenceTaxon == true && batch.getReferenceTaxon() == null) { + CatchBatchValidationError error = new CatchBatchValidationError( + "tutti.persistence.batch.validation.referenceTaxonNotFound", + _("tutti.persistence.batch.validation.referenceTaxonNotFound", batch.getId()), + CatchBatchValidationError.GRAVITY_ERROR); + errors.add(error); + } + + if (!batchHasError) { + validate(batch.getChildBatchs(), errors, treeLevel+1); + } + } + } + + protected void beanToEntity(SpeciesBatch source, + SortingBatch target, + String parentBatchId, + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch, + boolean copyIfNull) { + Preconditions.checkNotNull(source.getFishingOperation()); + Preconditions.checkNotNull(source.getFishingOperation().getId()); + + // Retrieve recorder department + Integer recorderDepartmentId = getRecorderDepartmentId(); + + // Create lists to store all updates, then remove not updated items + Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); + if (target.getQuantificationMeasurements() != null) { + notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); + } + Set<SortingMeasurement> notChangedSortingMeasurements = new HashSet<SortingMeasurement>(); + if (target.getSortingMeasurements() != null) { + notChangedSortingMeasurements.addAll(target.getSortingMeasurements()); + } + + // If parent and root need to be set + if (target.getId() == null + || target.getRootBatch() == null + || (target.getParentBatch() != null && !target.getParentBatch().getId().toString().equals(parentBatchId))) { + setBatchParents(source, target, parentBatchId, catchBatch); + } + + // RankOrder (initialize once, at creation) + if (target.getRankOrder() == null) { + // Start rank order at 3, because of special batches 'Biota' and 'Inert' + short rankOrder = (short) 3; + if (source.getParentBatch() != null && source.getParentBatch().getChildBatchs() != null) { + // TODO BL : vérifier cela (est-ce que l'item est ajouté à son père AVANT d'être passé au service ?) + rankOrder += (short) source.getParentBatch().getChildBatchs().size(); + } + target.setRankOrder(rankOrder); + } + + // Force subgroup count to '1', as Allegro + target.setSubgroupCount(1f); + + // Weight or SampleCategoryWeight + if (copyIfNull && source.getWeight() == null && source.getSampleCategoryWeight() == null) { + // Nothing to do : will be removed later, using notChangedSortingMeasurements + } else if (source.getSampleCategoryWeight() != null && source.getWeight() == null) { + QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getSampleCategoryWeight(), true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } else if (source.getWeight() != null && source.getSampleCategoryWeight() == null) { + QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getWeight(), true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } + + // Sampling Ratio + if (copyIfNull && (source.getSampleCategoryWeight() == null || source.getWeight() == null)) { + target.setSamplingRatio(null); + target.setSamplingRatioText(null); + } else if (source.getSampleCategoryWeight() != null && source.getWeight() != null) { + String samplingRatioText = source.getWeight() + "/" + source.getSampleCategoryWeight(); + samplingRatioText = samplingRatioText.replaceAll(",", "."); + target.setSamplingRatioText(samplingRatioText); + target.setSamplingRatio(source.getWeight() / source.getSampleCategoryWeight()); + QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getWeight(), true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } + + // Sorting measurement + if (copyIfNull && (source.getSampleCategoryType() == null || source.getSampleCategoryValue() == null)) { + // Nothing to do : will be removed later, using notChangedSortingMeasurements + } else if (source.getSampleCategoryType() != null && source.getSampleCategoryValue() != null) { + Integer pmfmId = measurementHelper.sampleCategory2PmfmId(source.getSampleCategoryType()); + // Do not store sorting measurement if pmfm = SORTED (already store in an ancestor batch) + if (!pmfmId.equals(enumeration.PMFM_ID_SORTED_UNSORTED)) { + SortingMeasurement sortingMeasurement = measurementHelper.setSortingMeasurement(target, recorderDepartmentId, + source.getSampleCategoryType(), source.getSampleCategoryValue()); + notChangedSortingMeasurements.remove(sortingMeasurement); + } + } + + // Individual count + if (copyIfNull && source.getNumber() == null) { + target.setIndividualCount(null); + } else if (source.getNumber() != null) { + target.setIndividualCount(source.getNumber()); + } + + // Species + if (copyIfNull && (source.getSpecies() == null || parentBatchId != null)) { + target.setReferenceTaxon(null); + } else if (source.getSpecies() != null && parentBatchId == null) { + ReferenceTaxon referenceTaxon = load(ReferenceTaxonImpl.class, source.getSpecies().getReferenceTaxonId()); + target.setReferenceTaxon(referenceTaxon); + } + + // QualityFlag + if (source.isSpeciesToConfirm()) { + target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_DOUBTFUL)); + } else { + target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); + } + + // Comments + if (copyIfNull && source.getComment() == null) { + target.setComments(null); + } else if (source.getComment() != null) { + target.setComments(source.getComment()); + } + + // Exhaustive inventory (always true under a species batch) + target.setExhaustiveInventory(true); + + // Removed not changed measurements (in sorting and quantification measurement lists) + if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { + for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { + target.getQuantificationMeasurements().remove(qm); + } + } + if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { + for (SortingMeasurement sm : notChangedSortingMeasurements) { + target.getSortingMeasurements().remove(sm); + } + } + } + + public void setBatchParents(SpeciesBatch source, SortingBatch target, String parentBatchIdStr, + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch) { + + Preconditions.checkNotNull(target); + Preconditions.checkNotNull(source.getFishingOperation()); + Preconditions.checkNotNull(source.getFishingOperation().getId()); + + // Load existing parent and root + SortingBatch parentBatch = null; + if (parentBatchIdStr != null) { + parentBatch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(parentBatchIdStr)); + } + + // Or retrieve parent batch, from pmfm id + else { + // Retrieve category type + Integer pmfmId = measurementHelper.sampleCategory2PmfmId(source.getSampleCategoryType()); + if (pmfmId == null || !pmfmId.equals(enumeration.PMFM_ID_SORTED_UNSORTED)) { + throw new DataIntegrityViolationException(MessageFormat.format( + "A species batch with no parent should have a sampleCategoryType {0} (PMFM.ID={1})", + SampleCategoryEnum.sortedUnsorted.name(), + enumeration.PMFM_ID_SORTED_UNSORTED)); + } + Integer qualitativeValueId = convertSampleCategoryValueIntoQualitativeId(source.getSampleCategoryValue()); + + parentBatch = catchBatchDao.getSortingBatch(catchBatch.getChildBatchs(), + "pmfmId", pmfmId, qualitativeValueId, + "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + + // Parent Batch + target.setParentBatch(parentBatch); + } + + + if (parentBatch == null) { + throw new DataIntegrityViolationException( + "Could not retrieve parent batch, for a given speciesBatch : invalid batch tree structure. Please make sure CatchBatch has been saved before to create a SpeciesBatch."); + } + + // Parent Batch + target.setParentBatch(parentBatch); + target.setRootBatch(catchBatch); + } + + Integer convertSampleCategoryValueIntoQualitativeId(Serializable value) { + if (value == null) + return null; + Integer qualitativeValueId = null; + if (value instanceof CaracteristicQualitativeValue) { + CaracteristicQualitativeValue cqValue = (CaracteristicQualitativeValue) value; + qualitativeValueId = Integer.valueOf(cqValue.getId()); + } else if (value instanceof String) { + qualitativeValueId = Integer.valueOf((String) value); + } + return qualitativeValueId; + } + + protected void setSampleCategoryQualitative(SpeciesBatch target, Integer pmfmId, Float numericalvalue, String alphanumericalValue, + Integer qualitativeValueId) { + // skip if null or corresponding to the SORTING_TYPE PMFM (Expèce, Benthos, Plancton, etc.) + if (pmfmId == null || pmfmId.equals(enumeration.PMFM_ID_SORTING_TYPE)) { + return; + } + + SampleCategoryEnum sampleCategory = referentialService.getSampleCategoryByPmfmId(pmfmId); + Preconditions.checkNotNull(sampleCategory, "Unable to find corresponding SampleCategoryEnum for PMFM.ID : " + pmfmId); + + target.setSampleCategoryType(sampleCategory); + if (numericalvalue != null) { + target.setSampleCategoryValue(numericalvalue); + return; + } + if (alphanumericalValue != null) { + target.setSampleCategoryValue(alphanumericalValue); + return; + } + + Caracteristic caracteristic = referentialService.getCaracteristic(pmfmId); + if (caracteristic == null || caracteristic.getCaracteristicType() != CaracteristicType.QUALITATIVE) { + return; + } + CaracteristicQualitativeValue value = null; + for (CaracteristicQualitativeValue qv : caracteristic.getQualitativeValue()) { + if (qualitativeValueId == Integer.parseInt(qv.getId())) { + value = qv; + break; + } + } + target.setSampleCategoryValue(value); + } + + protected void beanToEntity(SpeciesBatchFrequency source, SortingBatch target, SortingBatch parentBatch, short rankOrder, boolean copyIfNull) { + Preconditions.checkNotNull(source.getBatch()); + Preconditions.checkNotNull(source.getBatch().getId()); + + // Retrieve recorder department + Integer recorderDepartmentId = getRecorderDepartmentId(); + + // Create lists to store all updates, then remove not updated items + Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); + if (target.getQuantificationMeasurements() != null) { + notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); + } + Set<SortingMeasurement> notChangedSortingMeasurements = new HashSet<SortingMeasurement>(); + if (target.getSortingMeasurements() != null) { + notChangedSortingMeasurements.addAll(target.getSortingMeasurements()); + } + + // If parent and root need to be set + if (target.getId() == null + || target.getRootBatch() == null + || (target.getParentBatch() != null && !target.getParentBatch().getId().equals(parentBatch.getId()))) { + + target.setParentBatch(parentBatch); + target.setRootBatch(parentBatch.getRootBatch()); + } + + // RankOrder + target.setRankOrder(rankOrder); + + // Weight or SampleCategoryWeight + if (copyIfNull && source.getWeight() == null) { + // Nothing to do : will be removed later, using notChangedSortingMeasurements + } else if (source.getWeight() != null) { + QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getWeight(), true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } + + // Sorting measurement + if (copyIfNull && (source.getLengthStepCaracteristic() == null || source.getLengthStep() == null)) { + // Nothing to do : will be removed later, using notChangedSortingMeasurements + } else if (source.getLengthStepCaracteristic() != null && source.getLengthStep() != null) { + Integer pmfmId = Integer.valueOf(source.getLengthStepCaracteristic().getId()); + SortingMeasurement sortingMeasurement = measurementHelper.setSortingMeasurement(target, recorderDepartmentId, pmfmId, + source.getLengthStep()); + notChangedSortingMeasurements.remove(sortingMeasurement); + } + + // Individual count + if (copyIfNull && source.getNumber() == null) { + target.setIndividualCount(null); + } else if (source.getNumber() != null) { + target.setIndividualCount(source.getNumber()); + } + + // Species + target.setReferenceTaxon(null); + + // QualityFlag + target.setQualityFlag(parentBatch.getQualityFlag()); + + // Comments + if (copyIfNull && source.getComment() == null) { + target.setComments(null); + } else if (source.getComment() != null) { + target.setComments(source.getComment()); + } + + // Exhaustive inventory (always true under a species batch) + target.setExhaustiveInventory(true); + + // Removed not changed measurements (in sorting and quantification measurement lists) + if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { + for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { + target.getQuantificationMeasurements().remove(qm); + } + } + if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { + for (SortingMeasurement sm : notChangedSortingMeasurements) { + target.getSortingMeasurements().remove(sm); + } + } + } + + protected UIWeight convertDatabase2UI(Float weight, Float samplingRatio, String samplingRatioText) { + UIWeight result = new UIWeight(); + + // Weight & sampleCategory Weight + if (samplingRatio == null) { + result.sampleCategoryWeight = weight; + } else if (weight != null) { + String startStr = weight.toString().replace(',', '.') + "/"; + if (samplingRatioText != null && samplingRatioText.startsWith(startStr)) { + String weightStr = samplingRatioText.substring(startStr.length()); + if (weightStr != null && !weightStr.isEmpty()) { + result.sampleCategoryWeight = Float.parseFloat(weightStr); + result.weight = weight; + } + } else { + result.sampleCategoryWeight = weight; + } + } + return result; + } + + static class UIWeight { + Float sampleCategoryWeight = null; + + Float weight = null; + } + + protected void beanToEntity(CatchBatch source, + fr.ifremer.adagio.core.dao.data.batch.CatchBatch target, + boolean copyIfNull) { + Preconditions.checkNotNull(source.getFishingOperation()); + Preconditions.checkNotNull(source.getFishingOperation().getId()); + + // Retrieve recorder department + Integer recorderDepartmentId = getRecorderDepartmentId(); + + // First initialization (when created) + Integer fishingOperationId = Integer.valueOf(source.getFishingOperation().getId()); + target.setFishingOperation(load(FishingOperationImpl.class, fishingOperationId)); + + target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); + target.setRankOrder((short) 1); + target.setSynchronizationStatus(SynchronizationStatus.DIRTY.getValue()); + + // Create lists to store all updates, then remove not updated items + Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); + if (target.getQuantificationMeasurements() != null) { + notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); + } + + // Total Weight + if (copyIfNull && source.getCatchTotalWeight() == null) { + // Nothing to do : will be removed later, using notChangedQuantificationMeasurements + } else if (source.getCatchTotalWeight() != null) { + QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getCatchTotalWeight(), true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } + + // Removed not changed measurements (in sorting and quantification measurement lists) + if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { + for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { + target.getQuantificationMeasurements().remove(qm); + } + } + Map<Integer, SortingBatch> catchBatchChilds = getChildsMap(target, enumeration.PMFM_ID_SORTED_UNSORTED); + + // ----------------------------------------------------------------------------- + // Sorted Vrac + // ----------------------------------------------------------------------------- + { + SortingBatch batch = catchBatchChilds.get(enumeration.QUALITATIVE_VRAC_ID); + if (batch == null) { + batch = SortingBatch.Factory.newInstance(); + target.getChildBatchs().add(batch); + } + beanToEntitySortingBatch(target, target, batch, recorderDepartmentId, + enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, + source.getCatchTotalSortedCarousselWeight(), source.getCatchTotalSortedTremisWeight(), + copyIfNull); + batch.setRankOrder((short) 1); + + // Manage childs : + { + Map<Integer, SortingBatch> batchChilds = getChildsMap(batch, enumeration.PMFM_ID_SORTING_TYPE); + + // ----------------------------------------------------------------------------- + // Sorted Vrac / Species + // ----------------------------------------------------------------------------- + SortingBatch speciesBatch = batchChilds.get(enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + if (speciesBatch == null) { + speciesBatch = SortingBatch.Factory.newInstance(); + if (batch.getChildBatchs() == null) { + batch.setChildBatchs(Lists.newArrayList((Batch) speciesBatch)); + } else { + batch.getChildBatchs().add(speciesBatch); + } + } + beanToEntitySortingBatch(target, batch, speciesBatch, recorderDepartmentId, + enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, + source.getSpeciesTotalSampleSortedWeight(), source.getSpeciesTotalSortedWeight(), + copyIfNull); + speciesBatch.setRankOrder((short) 1); + + { + + // ----------------------------------------------------------------------------- + // Sorted Vrac / Species / Alive not itemized + // ----------------------------------------------------------------------------- + SortingBatch aliveNotItemizedBatch = catchBatchDao.getSortingBatch(speciesBatch.getChildBatchs(), "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_LIFE); + if (aliveNotItemizedBatch == null) { + aliveNotItemizedBatch = SortingBatch.Factory.newInstance(); + if (speciesBatch.getChildBatchs() == null) { + speciesBatch.setChildBatchs(Lists.newArrayList((Batch) aliveNotItemizedBatch)); + } else { + speciesBatch.getChildBatchs().add(aliveNotItemizedBatch); + } + } + beanToEntityReferenceTaxonBatch(target, speciesBatch, aliveNotItemizedBatch, recorderDepartmentId, + enumeration.REFERENCE_TAXON_ID_LIFE, + source.getSpeciesTotalLivingNotItemizedWeight(), null, + copyIfNull); + aliveNotItemizedBatch.setRankOrder((short) 1); + + // ----------------------------------------------------------------------------- + // Sorted Vrac / Species / Inert (not alive) + // ----------------------------------------------------------------------------- + SortingBatch inertBatch = catchBatchDao.getSortingBatch(speciesBatch.getChildBatchs(), "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_INERT); + if (inertBatch == null) { + inertBatch = SortingBatch.Factory.newInstance(); + speciesBatch.getChildBatchs().add(inertBatch); + } + beanToEntityReferenceTaxonBatch(target, speciesBatch, inertBatch, recorderDepartmentId, + enumeration.REFERENCE_TAXON_ID_INERT, + source.getSpeciesTotalInertWeight(), null, + copyIfNull); + inertBatch.setRankOrder((short) 2); + } + } + // TODO BL : benthos, plancton, macro déchet... + } + + // ----------------------------------------------------------------------------- + // Sorted Hors Vrac + // ----------------------------------------------------------------------------- + { + SortingBatch batch = catchBatchChilds.get(enumeration.QUALITATIVE_HORS_VRAC_ID); + if (batch == null) { + batch = SortingBatch.Factory.newInstance(); + target.getChildBatchs().add(batch); + } + beanToEntitySortingBatch(target, target, batch, recorderDepartmentId, + enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, + source.getCatchTotalUnsortedWeight(), null, + copyIfNull); + batch.setRankOrder((short) 2); + + // Manage childs : + { + Map<Integer, SortingBatch> batchChilds = getChildsMap(batch, enumeration.PMFM_ID_SORTING_TYPE); + + // Species : + SortingBatch speciesBatch = batchChilds.get(enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + if (speciesBatch == null) { + speciesBatch = SortingBatch.Factory.newInstance(); + if (batch.getChildBatchs() == null) { + batch.setChildBatchs(Lists.newArrayList((Batch) speciesBatch)); + } else { + batch.getChildBatchs().add(speciesBatch); + } + } + beanToEntitySortingBatch(target, batch, speciesBatch, recorderDepartmentId, + enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, + source.getSpeciesTotalUnsortedWeight(), null, + copyIfNull); + speciesBatch.setRankOrder((short) 1); + } + + // TODO BL : benthos, plancton, macro déchet... + } + + // ----------------------------------------------------------------------------- + // Unsorted (=rejected) + // ----------------------------------------------------------------------------- + // Unsorted : + SortingBatch unsortedBatch = catchBatchChilds.get(enumeration.QUALITATIVE_UNSORTED_ID); + if (unsortedBatch == null) { + unsortedBatch = SortingBatch.Factory.newInstance(); + target.getChildBatchs().add(unsortedBatch); + } + beanToEntitySortingBatch(target, target, unsortedBatch, recorderDepartmentId, + enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_UNSORTED_ID, + source.getCatchTotalRejectedWeight(), null, + copyIfNull); + unsortedBatch.setRankOrder((short) 3); + + } + + protected Map<Integer, SortingBatch> getChildsMap(Batch parentBatch, Integer pmfmId) { + Map<Integer, SortingBatch> batchByQualitativeValueId = new HashMap<Integer, SortingBatch>(); + if (parentBatch.getChildBatchs() == null) { + return batchByQualitativeValueId; + } + for (Batch childBatch : parentBatch.getChildBatchs()) { + SortingBatch childSortingBatch = (SortingBatch) childBatch; + SortingMeasurement sm = measurementHelper.getSortingMeasurement((SortingBatch) childBatch, pmfmId, null, false); + if (sm != null && sm.getQualitativeValue() != null && sm.getQualitativeValue().getId() != null) { + batchByQualitativeValueId.put(sm.getQualitativeValue().getId(), childSortingBatch); + } + } + return batchByQualitativeValueId; + } + + /** + * Retrieve child batchs if species is "Life" or "No life" + * (need to retrieve: speciesTotalLivingNotItemizedWeight and speciesTotalInertWeight) + * + * @param parentBatch + * @return + */ + protected Map<Integer, SortingBatch> getChildAliveNotSortedOrInert(Batch parentBatch) { + Map<Integer, SortingBatch> batchByQualitativeValueId = new HashMap<Integer, SortingBatch>(); + if (parentBatch.getChildBatchs() == null) { + return batchByQualitativeValueId; + } + for (Batch childBatch : parentBatch.getChildBatchs()) { + SortingBatch childSortingBatch = (SortingBatch) childBatch; + if (childSortingBatch.getReferenceTaxon() != null && childSortingBatch.getId().intValue() < 0) { + if (enumeration.REFERENCE_TAXON_ID_LIFE.equals(childSortingBatch.getId())) { + batchByQualitativeValueId.put(enumeration.REFERENCE_TAXON_ID_LIFE, childSortingBatch); + } else if (enumeration.REFERENCE_TAXON_ID_LIFE.equals(childSortingBatch.getId())) { + batchByQualitativeValueId.put(enumeration.REFERENCE_TAXON_ID_LIFE, childSortingBatch); + } + } + } + return batchByQualitativeValueId; + } + + protected void beanToEntitySortingBatch( + fr.ifremer.adagio.core.dao.data.batch.CatchBatch rootBatch, + fr.ifremer.adagio.core.dao.data.batch.Batch parentBatch, + fr.ifremer.adagio.core.dao.data.batch.SortingBatch target, + Integer recorderDepartmentId, + Integer sortingPmfmId, + Integer sortingQualitativeValueId, + Float weight, + Float sampleWeight, + boolean copyIfNull) { + + // Create lists to store all updates, then remove not updated items + Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); + if (target.getQuantificationMeasurements() != null) { + notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); + } + Set<SortingMeasurement> notChangedSortingMeasurements = new HashSet<SortingMeasurement>(); + if (target.getSortingMeasurements() != null) { + notChangedSortingMeasurements.addAll(target.getSortingMeasurements()); + } + + // Some mandatory properties : + target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); + target.setRootBatch(rootBatch); + target.setParentBatch(parentBatch); + target.setExhaustiveInventory(true); + + // No taxon or taxon group + target.setReferenceTaxon(null); + target.setTaxonGroup(null); + + // Sorting measurement + if (copyIfNull && (sortingPmfmId == null || sortingQualitativeValueId == null)) { + // Nothing to do : will be removed later, using notChangedSortingMeasurements + } else if (sortingPmfmId != null && sortingQualitativeValueId != null) { + SortingMeasurement sm = measurementHelper.setSortingMeasurement(target, recorderDepartmentId, sortingPmfmId, sortingQualitativeValueId); + notChangedSortingMeasurements.remove(sm); + } + + // Sampling Ratio + if (copyIfNull && (sampleWeight == null || weight == null)) { + target.setSamplingRatio(null); + target.setSamplingRatioText(null); + } else if (sampleWeight != null && weight != null) { + String samplingRatioText = weight + "/" + sampleWeight; + samplingRatioText = samplingRatioText.replaceAll(",", "."); + target.setSamplingRatioText(samplingRatioText); + target.setSamplingRatio(weight / sampleWeight); + } + + // Weight + if (copyIfNull && (sampleWeight == null && weight == null)) { + // Nothing to do : will be removed later, using notChangedQuantificationMeasurements + } else if (sampleWeight != null || weight != null) { + Float batchReferenceWeight = weight; + if (batchReferenceWeight == null) { + batchReferenceWeight = sampleWeight; + } + QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, batchReferenceWeight, true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } + + // Removed not changed measurements (in sorting and quantification measurement lists) + if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { + for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { + target.getQuantificationMeasurements().remove(qm); + } + } + if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { + for (SortingMeasurement sm : notChangedSortingMeasurements) { + target.getSortingMeasurements().remove(sm); + } + } + } + + protected void beanToEntityReferenceTaxonBatch( + fr.ifremer.adagio.core.dao.data.batch.CatchBatch rootBatch, + fr.ifremer.adagio.core.dao.data.batch.Batch parentBatch, + fr.ifremer.adagio.core.dao.data.batch.SortingBatch target, + Integer recorderDepartmentId, + Integer referenceTaxonId, + Float weight, + Float sampleWeight, + boolean copyIfNull) { + + // Create lists to store all updates, then remove not updated items + Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); + if (target.getQuantificationMeasurements() != null) { + notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); + } + Set<SortingMeasurement> notChangedSortingMeasurements = new HashSet<SortingMeasurement>(); + if (target.getSortingMeasurements() != null) { + notChangedSortingMeasurements.addAll(target.getSortingMeasurements()); + } + + // Some mandatory properties : + target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); + target.setRootBatch(rootBatch); + target.setParentBatch(parentBatch); + target.setExhaustiveInventory(true); + + // Reference taxon + target.setReferenceTaxon(load(ReferenceTaxonImpl.class, referenceTaxonId)); + target.setTaxonGroup(null); + + // Sampling Ratio + if (copyIfNull && (sampleWeight == null || weight == null)) { + target.setSamplingRatio(null); + target.setSamplingRatioText(null); + } else if (sampleWeight != null && weight != null) { + String samplingRatioText = weight + "/" + sampleWeight; + samplingRatioText = samplingRatioText.replaceAll(",", "."); + target.setSamplingRatioText(samplingRatioText); + target.setSamplingRatio(weight / sampleWeight); + } + + // Weight + if (copyIfNull && (sampleWeight == null && weight == null)) { + // Nothing to do : will be removed later, using notChangedQuantificationMeasurements + } else if (sampleWeight != null || weight != null) { + Float batchReferenceWeight = weight; + if (batchReferenceWeight == null) { + batchReferenceWeight = sampleWeight; + } + QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, batchReferenceWeight, true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } + + // Removed not changed measurements (in sorting and quantification measurement lists) + if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { + for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { + target.getQuantificationMeasurements().remove(qm); + } + } + if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { + for (SortingMeasurement sm : notChangedSortingMeasurements) { + target.getSortingMeasurements().remove(sm); + } + } + } + + protected Integer getRecorderDepartmentId() { + // TODO BL : voir si on peut récupérer le departement (du 1er saisisseur ?) + return enumeration.DEPARTMENT_ID_UNKNOWN_RECORDER_DEPARTMENT; + } +} \ No newline at end of file Property changes on: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceImpl.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeHelper.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeHelper.java 2013-02-14 15:27:16 UTC (rev 413) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeHelper.java 2013-02-14 23:53:34 UTC (rev 414) @@ -27,6 +27,7 @@ import com.google.common.base.Predicate; import com.google.common.collect.Lists; import com.google.common.collect.Sets; +import fr.ifremer.tutti.persistence.ProgressionModel; import fr.ifremer.tutti.persistence.entities.TuttiEntities; import org.apache.commons.lang3.time.DateUtils; import org.apache.commons.logging.Log; @@ -83,26 +84,32 @@ * @param localProperties properties to connect to local database * @param remoteProperties properties to connect to remove database * @param dialect dialect used to seek metadata of databases. - * @return Result of the synchronize operation, if there is an error then - * the {@link ReferentialSynchronizeResult#isSuccess()} is {@code false} - * and you can get the error at - * {@link ReferentialSynchronizeResult#getError()} + * @param result Result of the synchronize operation, if there is an error then + * the {@link ReferentialSynchronizeResult#isSuccess()} is {@code false} + * and you can get the error at + * {@link ReferentialSynchronizeResult#getError()} */ - public ReferentialSynchronizeResult synchronize(Properties localProperties, - Properties remoteProperties, - Dialect dialect) { + public void prepare(Properties localProperties, + Properties remoteProperties, + Dialect dialect, + ReferentialSynchronizeResult result) { - ReferentialSynchronizeResult result = new ReferentialSynchronizeResult( - TuttiEntities.getUrl(localProperties), - TuttiEntities.getUrl(remoteProperties)); + result.setLocalUrl(TuttiEntities.getUrl(localProperties)); + result.setRemoteUrl(TuttiEntities.getUrl(remoteProperties)); + Connection localConnection = null; Connection remoteConnection = null; try { + ProgressionModel progressionModel = result.getProgressionModel(); + progressionModel.setMessage("Connection à la base de synchronisation"); + // create local connection localConnection = TuttiEntities.createConnection(localProperties); + progressionModel.setMessage("Connection à la base à synchroniser"); + // create remote Connection remoteConnection = TuttiEntities.createConnection(remoteProperties); @@ -112,6 +119,8 @@ TuttiDatabaseMetadata remoteMeta = loadDatabaseMetadata(remoteConnection, dialect); + progressionModel.setMessage("Vérification de la compatibilité des schémas"); + // check schema try { checkSchemas(localMeta, remoteMeta); @@ -127,6 +136,8 @@ String tableName = tuttiTable.name(); + progressionModel.setMessage("Lecture de la table " + tableName); + TuttiTableMetadata table = remoteMeta.getTable(tableName); if (log.isDebugEnabled()) { @@ -142,40 +153,100 @@ if (log.isInfoEnabled()) { log.info("Total rows to update: " + totalRows); } + localConnection.rollback(); + } + } catch (SQLException e) { + try { + if (localConnection != null) { + localConnection.rollback(); + } + } catch (SQLException e1) { - // prepare target (desactivate constraints) - prepareSynch(localConnection); + // ignore the rolback error + } + result.setError(e); + } finally { + JdbcUtils.closeConnection(remoteConnection); + JdbcUtils.closeConnection(localConnection); + } + } - try { - for (TuttiTable tuttiTable : TuttiTable.values()) { + /** + * Synchronize database given from {@code localProperties} (means the + * database to update) with remote database (means the database which + * contains the referential to use) given by {@code remoteProperties} + * using the given {@code dialect} to inspect databases metadatas. + * + * @param localProperties properties to connect to local database + * @param remoteProperties properties to connect to remove database + * @param dialect dialect used to seek metadata of databases. + * @return Result of the synchronize operation, if there is an error then + * the {@link ReferentialSynchronizeResult#isSuccess()} is {@code false} + * and you can get the error at + * {@link ReferentialSynchronizeResult#getError()} + */ + public ReferentialSynchronizeResult synchronize(Properties localProperties, + Properties remoteProperties, + Dialect dialect, + ReferentialSynchronizeResult result) { - String tableName = tuttiTable.name(); - TuttiTableMetadata table = remoteMeta.getTable(tableName); + Connection localConnection = null; + Connection remoteConnection = null; + try { - if (log.isInfoEnabled()) { - log.info("Synchronize table: " + tableName); - } - synchronizeTable(table, - localConnection, - remoteConnection, - result); - } + // create local connection + localConnection = TuttiEntities.createConnection(localProperties); + + // create remote Connection + remoteConnection = TuttiEntities.createConnection(remoteProperties); + + // load metas + TuttiDatabaseMetadata remoteMeta = + loadDatabaseMetadata(remoteConnection, dialect); + + // set total in progression model + ProgressionModel progressionModel = result.getProgressionModel(); + progressionModel.setTotal(result.getTotalRows()); + + // prepare target (desactivate constraints) + prepareSynch(localConnection); + + try { + + for (TuttiTable tuttiTable : TuttiTable.values()) { + + String tableName = tuttiTable.name(); + + progressionModel.setMessage("Mise à jour de la table " + tableName); + + TuttiTableMetadata table = remoteMeta.getTable(tableName); + if (log.isInfoEnabled()) { - long totalInserts = result.getTotalInserts(); - long totalUpdates = result.getTotalUpdates(); - log.info("Total rows to treat: " + totalRows); - log.info("Total rows inserted: " + totalInserts); - log.info("Total rows updated: " + totalUpdates); - log.info("Total rows treated: " + (totalInserts + totalUpdates)); + log.info("Synchronize table: " + tableName); } - } finally { - releaseSynch(localConnection); + synchronizeTable(table, + localConnection, + remoteConnection, + result); } + if (log.isInfoEnabled()) { + long totalInserts = result.getTotalInserts(); + long totalUpdates = result.getTotalUpdates(); + log.info("Total rows to treat: " + result.getTotalRows()); + log.info("Total rows inserted: " + totalInserts); + log.info("Total rows updated: " + totalUpdates); + log.info("Total rows treated: " + (totalInserts + totalUpdates)); + } + } finally { + releaseSynch(localConnection); + } - localConnection.commit(); - } + progressionModel.setMessage("Sauvegarde des données dans la base locale"); + + localConnection.commit(); + } catch (SQLException e) { try { if (localConnection != null) { @@ -446,6 +517,10 @@ countR++; + if (countR % 1000 == 0) { + result.getProgressionModel().increments(1000); + } + if (insertCount > 0 && insertCount % 1000 == 0) { insertStatement.executeBatch(); insertStatement.clearBatch(); @@ -480,6 +555,8 @@ log.debug(String.format("%s INSERT count: %s", tablePrefix, result.getNbInserts(tableName))); log.debug(String.format("%s UPDATE count: %s", tablePrefix, result.getNbUpdates(tableName))); } + + result.getProgressionModel().increments(countR % 1000); } protected String getTablePrefix(TuttiTableMetadata table) { @@ -494,6 +571,8 @@ String tableName = table.getName(); + result.getProgressionModel().setMessage("Mise à jour de la table " + tableName); + String tablePrefix = getTablePrefix(table); // get last updateDate used by local db Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeResult.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeResult.java 2013-02-14 15:27:16 UTC (rev 413) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeResult.java 2013-02-14 23:53:34 UTC (rev 414) @@ -27,6 +27,7 @@ import com.google.common.collect.ImmutableSet; import com.google.common.collect.Maps; import com.google.common.collect.Sets; +import fr.ifremer.tutti.persistence.ProgressionModel; import java.sql.Timestamp; import java.util.Map; @@ -77,15 +78,28 @@ */ protected final Set<String> tableNames = Sets.newHashSet(); - protected final String localUrl; + protected String localUrl; - protected final String remoteUrl; + protected String remoteUrl; + protected final ProgressionModel progressionModel = new ProgressionModel(); + + public ReferentialSynchronizeResult() { + } + public ReferentialSynchronizeResult(String localUrl, String remoteUrl) { this.localUrl = localUrl; this.remoteUrl = remoteUrl; } + public void setLocalUrl(String localUrl) { + this.localUrl = localUrl; + } + + public void setRemoteUrl(String remoteUrl) { + this.remoteUrl = remoteUrl; + } + public boolean isSuccess() { return error == null; } @@ -98,28 +112,32 @@ this.error = error; } + public ProgressionModel getProgressionModel() { + return progressionModel; + } + public Set<String> getTableNames() { return ImmutableSet.copyOf(tableNames); } - public long getTotalRows() { - long result = 0; + public int getTotalRows() { + int result = 0; for (Integer nb : rowHits.values()) { result += nb; } return result; } - public long getTotalInserts() { - long result = 0; + public int getTotalInserts() { + int result = 0; for (Integer nb : insertHits.values()) { result += nb; } return result; } - public long getTotalUpdates() { - long result = 0; + public int getTotalUpdates() { + int result = 0; for (Integer nb : updateHits.values()) { result += nb; } Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeService.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeService.java 2013-02-14 15:27:16 UTC (rev 413) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeService.java 2013-02-14 23:53:34 UTC (rev 414) @@ -55,13 +55,27 @@ Dialect getLocalDialect(); /** + * Prepare the synchronize operation from the local data database supported + * by this service, says just compute nb rows to update for each table and + * update the result model. + * + * @param remoteConnectionProperties connection properties of the remote + * database used to synchronize referential + * @param result result of the operation + * @see ReferentialSynchronizeResult + */ + void prepare(Properties remoteConnectionProperties, + ReferentialSynchronizeResult result); + + /** * Launch the synchronize operation from the local data database supported * by this service. * * @param remoteConnectionProperties connection properties of the remote * database used to synchronize referential - * @return result of the operation + * @param result model * @see ReferentialSynchronizeResult */ - ReferentialSynchronizeResult synchronize(Properties remoteConnectionProperties); + void synchronize(Properties remoteConnectionProperties, + ReferentialSynchronizeResult result); } Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeServiceImpl.java 2013-02-14 15:27:16 UTC (rev 413) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeServiceImpl.java 2013-02-14 23:53:34 UTC (rev 414) @@ -24,6 +24,7 @@ * #L% */ +import com.google.common.base.Preconditions; import fr.ifremer.tutti.persistence.entities.TuttiEntities; import fr.ifremer.tutti.persistence.service.AbstractPersistenceService; import org.apache.commons.dbcp.BasicDataSource; @@ -75,10 +76,26 @@ } @Override - public ReferentialSynchronizeResult synchronize(Properties remoteConnectionProperties) { + public void prepare(Properties remoteConnectionProperties, ReferentialSynchronizeResult result) { + Preconditions.checkNotNull(result); + Preconditions.checkNotNull(remoteConnectionProperties); + helper.prepare(getLocalConnectionProperties(), + remoteConnectionProperties, + getLocalDialect(), + result); + } + + @Override + public void synchronize(Properties remoteConnectionProperties, ReferentialSynchronizeResult result) { //TODO Evict all caches, restart application (but not from here,...) - return helper.synchronize(getLocalConnectionProperties(), - remoteConnectionProperties, - getLocalDialect()); + + Preconditions.checkNotNull(result); + Preconditions.checkNotNull(remoteConnectionProperties); + Preconditions.checkState(result.isSuccess()); + + helper.synchronize(getLocalConnectionProperties(), + remoteConnectionProperties, + getLocalDialect(), + result); } } Modified: trunk/tutti-persistence/src/main/resources/tutti-db-enumerations.properties =================================================================== --- trunk/tutti-persistence/src/main/resources/tutti-db-enumerations.properties 2013-02-14 15:27:16 UTC (rev 413) +++ trunk/tutti-persistence/src/main/resources/tutti-db-enumerations.properties 2013-02-14 23:53:34 UTC (rev 414) @@ -380,5 +380,5 @@ #Reference taxon correspondant à "Biota" (ou "Vie") ReferenceTaxonId.LIFE=7637 #Reference taxon correspondant à "Non Biota" (ou "Non Vie" - matière inerte) -# TODO : a creer dans la base harmonie et a�changer ! +# TODO : a creer dans la base harmonie et achanger ! ReferenceTaxonId.INERT=1 \ No newline at end of file Modified: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/DatabaseResource.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/DatabaseResource.java 2013-02-14 15:27:16 UTC (rev 413) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/DatabaseResource.java 2013-02-14 23:53:34 UTC (rev 414) @@ -270,7 +270,7 @@ if (p != null) { TuttiEntities.fillConnectionProperties( p, - "jdbc:hsqldb:file:" + target.getAbsolutePath() + "/" + config.getDbName(), + TuttiEntities.getJdbcUrl(target, config.getDbName()), config.getJdbcUsername(), config.getJdbcPassword()); } @@ -377,7 +377,7 @@ log.info("Create new db at " + directory); } addToDestroy(directory); - String jdbcUrl = "jdbc:hsqldb:file:" + directory.getAbsolutePath() + "/" + dbName; + String jdbcUrl = TuttiEntities.getJdbcUrl(directory, dbName); String user = "SA"; String password = ""; Modified: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceReadTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceReadTest.java 2013-02-14 15:27:16 UTC (rev 413) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceReadTest.java 2013-02-14 23:53:34 UTC (rev 414) @@ -1,187 +1,187 @@ -package fr.ifremer.tutti.persistence.service; - -/* - * #%L - * Tutti :: Persistence API - * $Id: CatchBatchPersistenceServiceReadTest.java 379 2013-02-10 13:41:29Z tchemit $ - * $HeadURL: http://svn.forge.codelutin.com/svn/tutti/trunk/tutti-persistence/src/test/j… $ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import static org.junit.Assert.*; -import static org.junit.Assert.assertNull; -import static org.junit.Assert.assertTrue; - -import java.util.List; -import java.util.Map; - -import fr.ifremer.tutti.persistence.DatabaseResource; -import fr.ifremer.tutti.persistence.entities.data.CatchBatch; -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.SampleCategoryEnum; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; -import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; - -import org.junit.Before; -import org.junit.ClassRule; -import org.junit.Ignore; -import org.junit.Test; -import org.springframework.dao.DataRetrievalFailureException; - -import com.google.common.collect.Maps; - -/** - * To test {@link CatchBatchPersistenceService} for read operation. - * - * @author tchemit <chemit(a)codelutin.com> - * @since 1.0 - */ -public class BatchPersistenceServiceReadTest { - - @ClassRule - public static final DatabaseResource dbResource = DatabaseResource.readDb(); - - protected BatchPersistenceService service; - protected FishingOperationPersistenceService fishingOperationService; - protected FishingOperation fishingOperation; - - @Before - public void setUp() throws Exception { - service = TuttiPersistenceServiceLocator.getBatchPersistenceService(); - fishingOperationService = TuttiPersistenceServiceLocator.getFishingOperationPersistenceService(); - - List<FishingOperation> fishingOperations = fishingOperationService.getAllFishingOperation(dbResource.getFixtures().cruiseId()); - assertNotNull(fishingOperations); - assertTrue(fishingOperations.size() > 0); - fishingOperation = fishingOperations.get(0); - assertNotNull(fishingOperation); - assertNotNull(fishingOperation.getId()); - } - - @Test - public void getCatchBatchFromFishingOperation() throws Exception { - - try { - CatchBatch catchBatch = service.getCatchBatchFromFishingOperation(fishingOperation.getId()); - fail("batch tree must be invalid (old CGFS tree structure), for fishing operation id=" + fishingOperation.getId()); - } - catch(DataRetrievalFailureException drfe) { - // success - } - } - - @Test - public void getAllRootSpeciesBatch(/*String fishingOperationId*/) { - } - - @Test - public void getAllSpeciesBatchFrequency(/*String speciesBatchId*/) { - - } - - public static void assertSpeciesBatch(SpeciesBatch expectedBatch, SpeciesBatch actualBatch, boolean assertIdEquals) { - assertNotNull(actualBatch); - assertNotNull(actualBatch.getId()); - if (assertIdEquals && expectedBatch.getId() != null) { - assertEquals(expectedBatch.getId(), actualBatch.getId()); - } - assertEquals(expectedBatch.getWeight(), actualBatch.getWeight()); - assertEquals(expectedBatch.getSampleCategoryType(), actualBatch.getSampleCategoryType()); - if (expectedBatch.getSampleCategoryValue() != null && expectedBatch.getSampleCategoryValue() instanceof CaracteristicQualitativeValue) { - assertNotNull("Bad sampleCategoryValue : expected <" + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId() + "> but was <null>", - actualBatch.getSampleCategoryValue()); - assertEquals( - ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId(), - ((CaracteristicQualitativeValue) actualBatch.getSampleCategoryValue()).getId()); - } else { - assertEquals(expectedBatch.getSampleCategoryValue(), actualBatch.getSampleCategoryValue()); - } - assertEquals(expectedBatch.getSampleCategoryWeight(), actualBatch.getSampleCategoryWeight()); - assertEquals(expectedBatch.getNumber(), actualBatch.getNumber()); - assertEquals(expectedBatch.getComment(), actualBatch.getComment()); - - // Check species only if Vrac/HorsVrac or if batch has been load throw getAllxxx method - // (Because getSpeciesBatch(id) could not always retrieve the species) - if (expectedBatch.getSpecies() != null && ( - expectedBatch.getSampleCategoryType() == SampleCategoryEnum.sortedUnsorted - || actualBatch.getSpecies() != null)) { - assertNotNull(actualBatch.getSpecies()); - assertEquals(expectedBatch.getSpecies().getId(), actualBatch.getSpecies().getId()); - } - } - - public static void assertBatchFrequencies(List<SpeciesBatchFrequency> expectedFrequencies, List<SpeciesBatchFrequency> actualFrequencies, boolean assertIdEquals) { - assertNotNull(actualFrequencies); - assertEquals(expectedFrequencies.size(), actualFrequencies.size()); - - // Store actual batches into a map, using the length as key - Map<Float, SpeciesBatchFrequency> expectedLengthMap = Maps.newHashMap(); - for (SpeciesBatchFrequency speciesBatchFrequency : expectedFrequencies) { - expectedLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); - } - - // Store expected batches into a map, using the length as key - Map<Float, SpeciesBatchFrequency> actualLengthMap = Maps.newHashMap(); - for (SpeciesBatchFrequency speciesBatchFrequency : actualFrequencies) { - assertFalse("Duplicate lengthStep found in batchFrequencies, for length=" + speciesBatchFrequency.getLengthStep(), actualLengthMap.containsKey(speciesBatchFrequency.getLengthStep())); - actualLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); - assertNotNull(speciesBatchFrequency.getId()); - } - - for (Float lengthStep : expectedLengthMap.keySet()) { - SpeciesBatchFrequency expectedBatchFrequency = expectedLengthMap.get(lengthStep); - SpeciesBatchFrequency actualBatchFrequency = actualLengthMap.get(lengthStep); - if (assertIdEquals) { - assertEquals(expectedBatchFrequency.getId(), actualBatchFrequency.getId()); - } - assertNotNull(expectedBatchFrequency.getLengthStepCaracteristic()); - assertEquals(expectedBatchFrequency.getLengthStepCaracteristic().getId(), actualBatchFrequency.getLengthStepCaracteristic().getId()); - assertEquals(expectedBatchFrequency.getNumber(), actualBatchFrequency.getNumber()); - assertEquals(expectedBatchFrequency.getWeight(), actualBatchFrequency.getWeight()); - assertEquals(expectedBatchFrequency.getComment(), actualBatchFrequency.getComment()); - //assertNotNull(expectedBatchFrequency.getBatch()); - //assertEquals(expectedBatchFrequency.getBatch().getId(), actualBatchFrequency.getBatch().getId()); - } - } - - public static SpeciesBatch getSpeciesBatch(String fishingOperationId, String speciesBatchId) { - return getSpeciesBatch(speciesBatchId, TuttiPersistenceServiceLocator.getBatchPersistenceService().getAllRootSpeciesBatch(fishingOperationId)); - } - - public static SpeciesBatch getSpeciesBatch(String speciesBatchId, List<SpeciesBatch> speciesBatchs) { - if (speciesBatchs == null) { - return null; - } - for (SpeciesBatch speciesBatch : speciesBatchs) { - if (speciesBatchId.equals(speciesBatch.getId())) { - return speciesBatch; - } - if (speciesBatch.getChildBatchs() != null) { - speciesBatch = getSpeciesBatch(speciesBatchId, speciesBatch.getChildBatchs()); - if (speciesBatch != null) { - return speciesBatch; - } - } - } - return null; - } - -} +package fr.ifremer.tutti.persistence.service; + +/* + * #%L + * Tutti :: Persistence API + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import static org.junit.Assert.*; +import static org.junit.Assert.assertNull; +import static org.junit.Assert.assertTrue; + +import java.util.List; +import java.util.Map; + +import fr.ifremer.tutti.persistence.DatabaseResource; +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.SampleCategoryEnum; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; + +import org.junit.Before; +import org.junit.ClassRule; +import org.junit.Ignore; +import org.junit.Test; +import org.springframework.dao.DataRetrievalFailureException; + +import com.google.common.collect.Maps; + +/** + * To test {@link CatchBatchPersistenceService} for read operation. + * + * @author tchemit <chemit(a)codelutin.com> + * @since 1.0 + */ +public class BatchPersistenceServiceReadTest { + + @ClassRule + public static final DatabaseResource dbResource = DatabaseResource.readDb(); + + protected BatchPersistenceService service; + protected FishingOperationPersistenceService fishingOperationService; + protected FishingOperation fishingOperation; + + @Before + public void setUp() throws Exception { + service = TuttiPersistenceServiceLocator.getBatchPersistenceService(); + fishingOperationService = TuttiPersistenceServiceLocator.getFishingOperationPersistenceService(); + + List<FishingOperation> fishingOperations = fishingOperationService.getAllFishingOperation(dbResource.getFixtures().cruiseId()); + assertNotNull(fishingOperations); + assertTrue(fishingOperations.size() > 0); + fishingOperation = fishingOperations.get(0); + assertNotNull(fishingOperation); + assertNotNull(fishingOperation.getId()); + } + + @Test + public void getCatchBatchFromFishingOperation() throws Exception { + + try { + CatchBatch catchBatch = service.getCatchBatchFromFishingOperation(fishingOperation.getId()); + fail("batch tree must be invalid (old CGFS tree structure), for fishing operation id=" + fishingOperation.getId()); + } + catch(DataRetrievalFailureException drfe) { + // success + } + } + + @Test + public void getAllRootSpeciesBatch(/*String fishingOperationId*/) { + } + + @Test + public void getAllSpeciesBatchFrequency(/*String speciesBatchId*/) { + + } + + public static void assertSpeciesBatch(SpeciesBatch expectedBatch, SpeciesBatch actualBatch, boolean assertIdEquals) { + assertNotNull(actualBatch); + assertNotNull(actualBatch.getId()); + if (assertIdEquals && expectedBatch.getId() != null) { + assertEquals(expectedBatch.getId(), actualBatch.getId()); + } + assertEquals(expectedBatch.getWeight(), actualBatch.getWeight()); + assertEquals(expectedBatch.getSampleCategoryType(), actualBatch.getSampleCategoryType()); + if (expectedBatch.getSampleCategoryValue() != null && expectedBatch.getSampleCategoryValue() instanceof CaracteristicQualitativeValue) { + assertNotNull("Bad sampleCategoryValue : expected <" + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId() + "> but was <null>", + actualBatch.getSampleCategoryValue()); + assertEquals( + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId(), + ((CaracteristicQualitativeValue) actualBatch.getSampleCategoryValue()).getId()); + } else { + assertEquals(expectedBatch.getSampleCategoryValue(), actualBatch.getSampleCategoryValue()); + } + assertEquals(expectedBatch.getSampleCategoryWeight(), actualBatch.getSampleCategoryWeight()); + assertEquals(expectedBatch.getNumber(), actualBatch.getNumber()); + assertEquals(expectedBatch.getComment(), actualBatch.getComment()); + + // Check species only if Vrac/HorsVrac or if batch has been load throw getAllxxx method + // (Because getSpeciesBatch(id) could not always retrieve the species) + if (expectedBatch.getSpecies() != null && ( + expectedBatch.getSampleCategoryType() == SampleCategoryEnum.sortedUnsorted + || actualBatch.getSpecies() != null)) { + assertNotNull(actualBatch.getSpecies()); + assertEquals(expectedBatch.getSpecies().getId(), actualBatch.getSpecies().getId()); + } + } + + public static void assertBatchFrequencies(List<SpeciesBatchFrequency> expectedFrequencies, List<SpeciesBatchFrequency> actualFrequencies, boolean assertIdEquals) { + assertNotNull(actualFrequencies); + assertEquals(expectedFrequencies.size(), actualFrequencies.size()); + + // Store actual batches into a map, using the length as key + Map<Float, SpeciesBatchFrequency> expectedLengthMap = Maps.newHashMap(); + for (SpeciesBatchFrequency speciesBatchFrequency : expectedFrequencies) { + expectedLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); + } + + // Store expected batches into a map, using the length as key + Map<Float, SpeciesBatchFrequency> actualLengthMap = Maps.newHashMap(); + for (SpeciesBatchFrequency speciesBatchFrequency : actualFrequencies) { + assertFalse("Duplicate lengthStep found in batchFrequencies, for length=" + speciesBatchFrequency.getLengthStep(), actualLengthMap.containsKey(speciesBatchFrequency.getLengthStep())); + actualLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); + assertNotNull(speciesBatchFrequency.getId()); + } + + for (Float lengthStep : expectedLengthMap.keySet()) { + SpeciesBatchFrequency expectedBatchFrequency = expectedLengthMap.get(lengthStep); + SpeciesBatchFrequency actualBatchFrequency = actualLengthMap.get(lengthStep); + if (assertIdEquals) { + assertEquals(expectedBatchFrequency.getId(), actualBatchFrequency.getId()); + } + assertNotNull(expectedBatchFrequency.getLengthStepCaracteristic()); + assertEquals(expectedBatchFrequency.getLengthStepCaracteristic().getId(), actualBatchFrequency.getLengthStepCaracteristic().getId()); + assertEquals(expectedBatchFrequency.getNumber(), actualBatchFrequency.getNumber()); + assertEquals(expectedBatchFrequency.getWeight(), actualBatchFrequency.getWeight()); + assertEquals(expectedBatchFrequency.getComment(), actualBatchFrequency.getComment()); + //assertNotNull(expectedBatchFrequency.getBatch()); + //assertEquals(expectedBatchFrequency.getBatch().getId(), actualBatchFrequency.getBatch().getId()); + } + } + + public static SpeciesBatch getSpeciesBatch(String fishingOperationId, String speciesBatchId) { + return getSpeciesBatch(speciesBatchId, TuttiPersistenceServiceLocator.getBatchPersistenceService().getAllRootSpeciesBatch(fishingOperationId)); + } + + public static SpeciesBatch getSpeciesBatch(String speciesBatchId, List<SpeciesBatch> speciesBatchs) { + if (speciesBatchs == null) { + return null; + } + for (SpeciesBatch speciesBatch : speciesBatchs) { + if (speciesBatchId.equals(speciesBatch.getId())) { + return speciesBatch; + } + if (speciesBatch.getChildBatchs() != null) { + speciesBatch = getSpeciesBatch(speciesBatchId, speciesBatch.getChildBatchs()); + if (speciesBatch != null) { + return speciesBatch; + } + } + } + return null; + } + +} Property changes on: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceReadTest.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Modified: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceWriteTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceWriteTest.java 2013-02-14 15:27:16 UTC (rev 413) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceWriteTest.java 2013-02-14 23:53:34 UTC (rev 414) @@ -1,621 +1,621 @@ -package fr.ifremer.tutti.persistence.service; - -/* - * #%L - * Tutti :: Persistence API - * $Id: CatchBatchPersistenceServiceWriteTest.java 379 2013-02-10 13:41:29Z tchemit $ - * $HeadURL: http://svn.forge.codelutin.com/svn/tutti/trunk/tutti-persistence/src/test/j… $ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.persistence.DatabaseResource; -import fr.ifremer.tutti.persistence.entities.data.CatchBatch; -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.SampleCategoryEnum; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; -import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; -import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; -import fr.ifremer.tutti.persistence.entities.referential.CaracteristicType; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import org.junit.Before; -import org.junit.ClassRule; -import org.junit.Ignore; -import org.junit.Test; -import org.springframework.dao.DataRetrievalFailureException; - -import com.google.common.collect.Lists; -import com.google.common.collect.Maps; - -import java.util.Calendar; -import java.util.Date; -import java.util.GregorianCalendar; -import java.util.List; -import java.util.Map; - -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertNotNull; -import static org.junit.Assert.*; - -/** - * To test {@link CatchBatchPersistenceService} for write operation. - * - * @author tchemit <chemit(a)codelutin.com> - * @since 1.0 - */ -public class BatchPersistenceServiceWriteTest { - - @ClassRule - public static final DatabaseResource dbResource = DatabaseResource.writeDb(); - - protected BatchPersistenceService service; - - protected CruisePersistenceService cruiseService; - - protected FishingOperationPersistenceService fishingOperationService; - - protected CatchBatchPersistenceService catchBatchService; - - protected ReferentialPersistenceService referentialService; - - protected Cruise cruise; - - protected FishingOperation fishingOperationNoCatchBatch; - - protected FishingOperation fishingOperationWithEmptyBatch; - - protected CatchBatch catchBacth; - - protected List<Species> species; - - protected Caracteristic sortedUnsortedPMFM; - - protected CaracteristicQualitativeValue horsVracQualitativeValue; - - protected CaracteristicQualitativeValue vracQualitativeValue; - - protected Caracteristic maturityPMFM; - - protected CaracteristicQualitativeValue firstMaturityQualitativeValue; - - protected Caracteristic sexPMFM; - - protected CaracteristicQualitativeValue maleQualitativeValue; - - protected CaracteristicQualitativeValue femaleQualitativeValue; - - protected CaracteristicQualitativeValue unkQualitativeValue; - - protected Caracteristic frequencyPMFM; - - @Before - public void setUp() throws Exception { - service = TuttiPersistenceServiceLocator.getBatchPersistenceService(); - cruiseService = TuttiPersistenceServiceLocator.getCruisePersistenceService(); - fishingOperationService = TuttiPersistenceServiceLocator.getFishingOperationPersistenceService(); - catchBatchService = TuttiPersistenceServiceLocator.getCatchBatchPersistenceService(); - referentialService = TuttiPersistenceServiceLocator.getReferentialPersistenceService(); - - species = referentialService.getAllSpecies(); - assertNotNull(species); - assertTrue(species.size() > 2); - - cruise = cruiseService.getCruise(dbResource.getFixtures().cruiseId()); - cruise.setId(null); - Calendar calendar = new GregorianCalendar(); - cruise.setBeginDate(calendar.getTime()); - cruise.setYear(calendar.get(Calendar.YEAR)); - calendar.add(Calendar.MONTH, 1); // add one month - cruise.setEndDate(calendar.getTime()); - cruise = cruiseService.createCruise(cruise); - - // Create a first operation, with no cacth batch : to test CatchBatch insert/update : - List<FishingOperation> fishingOperations = fishingOperationService.getAllFishingOperation(dbResource.getFixtures().cruiseId()); - assertNotNull(fishingOperations); - assertTrue(fishingOperations.size() > 0); - fishingOperationNoCatchBatch = fishingOperations.get(0); - fishingOperationNoCatchBatch = fishingOperationService.getFishingOperation(fishingOperationNoCatchBatch.getId()); - fishingOperationNoCatchBatch.setId(null); - fishingOperationNoCatchBatch.setCruise(cruise); - calendar.setTime(new Date()); - calendar.set(Calendar.HOUR_OF_DAY, 1); - calendar.set(Calendar.MILLISECOND, 0); - fishingOperationNoCatchBatch.setGearShootingStartDate(calendar.getTime()); - calendar.setTime(new Date()); - calendar.set(Calendar.HOUR_OF_DAY, 10); - calendar.set(Calendar.MILLISECOND, 0); - fishingOperationNoCatchBatch.setGearShootingEndDate(calendar.getTime()); - fishingOperationNoCatchBatch = fishingOperationService.createFishingOperation(fishingOperationNoCatchBatch); - - // Create a second operation, with no cacth batch : to test CatchBatch insert/update : - fishingOperationWithEmptyBatch = fishingOperations.get(1); - fishingOperationWithEmptyBatch = fishingOperationService.getFishingOperation(fishingOperationWithEmptyBatch.getId()); - fishingOperationWithEmptyBatch.setId(null); - fishingOperationWithEmptyBatch.setCruise(cruise); - calendar.setTime(new Date()); - calendar.set(Calendar.HOUR_OF_DAY, 11); - calendar.set(Calendar.MILLISECOND, 0); - fishingOperationWithEmptyBatch.setGearShootingStartDate(calendar.getTime()); - calendar.setTime(new Date()); - calendar.set(Calendar.HOUR_OF_DAY, 12); - calendar.set(Calendar.MILLISECOND, 0); - fishingOperationWithEmptyBatch.setGearShootingEndDate(calendar.getTime()); - fishingOperationWithEmptyBatch = fishingOperationService.createFishingOperation(fishingOperationWithEmptyBatch); - - catchBacth = new CatchBatch(); - catchBacth.setFishingOperation(fishingOperationWithEmptyBatch); - catchBacth = catchBatchService.createCatchBatch(catchBacth); - - sortedUnsortedPMFM = referentialService.getSortedUnsortedCaracteristic(); - horsVracQualitativeValue = sortedUnsortedPMFM.getQualitativeValue(0); - vracQualitativeValue = sortedUnsortedPMFM.getQualitativeValue(1); - maturityPMFM = referentialService.getMaturityCaracteristic(); - firstMaturityQualitativeValue = maturityPMFM.getQualitativeValue(0); - sexPMFM = referentialService.getSexCaracteristic(); - maleQualitativeValue = sexPMFM.getQualitativeValue(1); - femaleQualitativeValue = sexPMFM.getQualitativeValue(2); - unkQualitativeValue = sexPMFM.getQualitativeValue(3); - - List<Caracteristic> cara = referentialService.getAllCaracteristic(); - for (Caracteristic caracteristic : cara) { - if (caracteristic.getCaracteristicType() == CaracteristicType.NUMBER - && caracteristic.getPrecision() != null - && caracteristic.getPrecision() == 0.5f) { - frequencyPMFM = caracteristic; - break; - } - } - assertNotNull("no numerical PMFM with a precision has been found. Could not define a PMFM for batch frequencies.", frequencyPMFM); - - } - - @Test - public void createAndSaveCatchBatch() throws Exception { - CatchBatch catchBatch; - - catchBatch = new CatchBatch(); - catchBatch.setFishingOperation(fishingOperationNoCatchBatch); - - // ----------------------------------------------------------------------------- - // 1. Test with only mandatory properties - // ----------------------------------------------------------------------------- - - // Create and reload (test round trip) - assertCreateAndReloadCatchBatch(catchBatch, fishingOperationNoCatchBatch.getId()); - - // ----------------------------------------------------------------------------- - // 2. Test with all properties - // ----------------------------------------------------------------------------- - catchBatch.setId(null); - // total weight : 100kg - catchBatch.setCatchTotalWeight(75f); - // Vrac : - { - // note : poids trie par la balance tremis (thalassa) (init par pupitri) - catchBatch.setCatchTotalSortedTremisWeight(50f); - // note : poids vrac caroussel (thalassa) (init par pupitri) (vrac trie) ou bien "poids trié fournie par la table de tri (Sum(Si) - catchBatch.setCatchTotalSortedCarousselWeight(45f); - - // Species - { - catchBatch.setSpeciesTotalSortedWeight(12f); - catchBatch.setSpeciesTotalSampleSortedWeight(8f); - catchBatch.setSpeciesTotalLivingNotItemizedWeight(0.2f); - catchBatch.setSpeciesTotalInertWeight(0.1f); - } - } - // Hors Vrac : 10kg - { - catchBatch.setCatchTotalUnsortedWeight(10f); - - // Species - { - catchBatch.setSpeciesTotalUnsortedWeight(10f); - } - } - // Rejet : 15kg - catchBatch.setCatchTotalRejectedWeight(15f); - - // Create and reload (test round trip) - assertCreateAndReloadCatchBatch(catchBatch, fishingOperationNoCatchBatch.getId()); - - // ----------------------------------------------------------------------------- - // 2. Test save after modification - // ----------------------------------------------------------------------------- - catchBatch.setCatchTotalSortedTremisWeight(null); - catchBatch.setCatchTotalSortedCarousselWeight(null); - catchBatch.setSpeciesTotalSortedWeight(null); - catchBatch.setSpeciesTotalSampleSortedWeight(null); - catchBatch.setCatchTotalUnsortedWeight(null); - catchBatch.setSpeciesTotalUnsortedWeight(null); - - assertSaveAndReloadCatchBatch(catchBatch, fishingOperationNoCatchBatch.getId()); - } - - @Test - public void createAndSaveSpeciesBatchAndFrequencies() { - SpeciesBatch esp1Batch = null; - SpeciesBatch esp2Batch = null; - SpeciesBatch frequenciesParentBatch = null; - SpeciesBatch batch = null; - Species taxon1 = species.get(0); - Species taxon2 = species.get(1); - - // ----------------------------------------------------------------------------- - // 1. Test with only mandatory properties - // ----------------------------------------------------------------------------- - // batch : "ESP1 - Vrac/5" - batch = new SpeciesBatch(); - batch.setParentBatch(null); - batch.setFishingOperation(fishingOperationNoCatchBatch); - batch.setSpecies(taxon1); - batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); - batch.setSampleCategoryValue(vracQualitativeValue); - batch.setSampleCategoryWeight(5f); - - assertCreateAndReloadSpeciesBatch(batch, null); - - // Save ESP1 batch - esp1Batch = batch; - - // ----------------------------------------------------------------------------- - // 2. Test child "Male/2" - // ----------------------------------------------------------------------------- - // Batch : ESP1 - Vrac/5 Male/2 ss-ech/1 Nombre/7 - batch = new SpeciesBatch(); - batch.setId(null); - batch.setParentBatch(esp1Batch); - batch.setSpecies(taxon1); - batch.setComment("ESP1 - Vrac/5 Male/2 ss-ech/1 Nombre/7"); - batch.setSampleCategoryType(SampleCategoryEnum.sex); - batch.setSampleCategoryValue(maleQualitativeValue); - batch.setSampleCategoryWeight(2f); - batch.setWeight(1f); - batch.setNumber(7); - - assertCreateAndReloadSpeciesBatch(batch, batch.getParentBatch().getId()); - - // ----------------------------------------------------------------------------- - // 3. Test child "Female/2" - // ----------------------------------------------------------------------------- - // Batch : ESP1 - Vrac/5 Female/3 Nombre/14 - batch = new SpeciesBatch(); - batch.setId(null); - batch.setParentBatch(esp1Batch); - batch.setSpecies(taxon1); - batch.setComment("ESP1 - Vrac/5 Female/3 Nombre/14"); - batch.setSampleCategoryType(SampleCategoryEnum.sex); - batch.setSampleCategoryValue(femaleQualitativeValue); - batch.setSampleCategoryWeight(3f); - batch.setWeight(null); - batch.setNumber(14); - - assertCreateAndReloadSpeciesBatch(batch, batch.getParentBatch().getId()); - - // ----------------------------------------------------------------------------- - // 4. Test : ESP2 - Vrac/7 - // \- ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11 - // ----------------------------------------------------------------------------- - // batch : "ESP2 - Vrac/7 " - batch = new SpeciesBatch(); - batch.setParentBatch(null); - batch.setSpecies(taxon2); - batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); - batch.setSampleCategoryValue(vracQualitativeValue); - batch.setSampleCategoryWeight(7f); - - assertCreateAndReloadSpeciesBatch(batch, null); - esp2Batch = batch; - - // Batch : ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11 - batch = new SpeciesBatch(); - batch.setId(null); - batch.setParentBatch(esp2Batch); - batch.setSpecies(taxon2); - batch.setComment("ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11"); - batch.setSampleCategoryType(SampleCategoryEnum.maturity); - batch.setSampleCategoryValue(firstMaturityQualitativeValue); - batch.setSampleCategoryWeight(2f); - batch.setWeight(1f); - batch.setNumber(11); - - assertCreateAndReloadSpeciesBatch(batch, batch.getParentBatch().getId()); - - // ----------------------------------------------------------------------------- - // 5. Test save after modifications - // ----------------------------------------------------------------------------- - // Batch : ESP2 - Vrac/7 UNK/1.75 ss-ech/1.11 Nombre/99 - batch.setComment("ESP2 - Vrac/7 UNK/1.75 ss-ech/1.11 Nombre/99"); - batch.setSampleCategoryType(SampleCategoryEnum.sex); - batch.setSampleCategoryValue(unkQualitativeValue); - batch.setSampleCategoryWeight(1.75f); - batch.setWeight(1.11f); - batch.setFishingOperation(fishingOperationWithEmptyBatch); - batch.setNumber(99); - - // Save and reload, then check - SpeciesBatch savedBatch = service.saveSpeciesBatch(batch); - assertSpeciesBatch(savedBatch, batch, false); - SpeciesBatch reloadedBatch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), savedBatch.getId()); - assertSpeciesBatch(savedBatch, reloadedBatch, true); - - // Save batch for later - frequenciesParentBatch = batch; - - // ----------------------------------------------------------------------------- - // 6. Test change species - // ----------------------------------------------------------------------------- - esp2Batch.setSpecies(taxon1); - service.changeSpeciesBatchSpecies(esp2Batch.getId(), taxon1); - assertSpeciesBatch(savedBatch, batch, false); - reloadedBatch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), esp2Batch.getId()); - assertSpeciesBatch(esp2Batch, reloadedBatch, true); - - // ----------------------------------------------------------------------------- - // 7. Test get all root species - // ----------------------------------------------------------------------------- - List<SpeciesBatch> rootSpeciesBatch = service.getAllRootSpeciesBatch(fishingOperationWithEmptyBatch.getId()); - assertNotNull(rootSpeciesBatch); - assertEquals(2, rootSpeciesBatch.size()); - assertNotNull(rootSpeciesBatch.get(0).getChildBatchs()); - assertTrue(rootSpeciesBatch.get(0).getChildBatchs().size() > 0); - assertNotNull(rootSpeciesBatch.get(1).getChildBatchs()); - assertTrue(rootSpeciesBatch.get(1).getChildBatchs().size() > 0); - - // ----------------------------------------------------------------------------- - // 8. Test batch frequency creation - // ----------------------------------------------------------------------------- - - List<SpeciesBatchFrequency> frequencies = Lists.newArrayList(); - float lengthStep = 0.5f; - for (float length = lengthStep; length < lengthStep * 20; length += lengthStep) { - SpeciesBatchFrequency frequency = new SpeciesBatchFrequency(); - frequency.setLengthStep(length); - frequency.setNumber((int) (length * 2)); - frequency.setWeight(0.01f * length * 2); - frequency.setLengthStepCaracteristic(frequencyPMFM); - frequency.setBatch(frequenciesParentBatch); - frequency.setComment("comments"); - frequencies.add(frequency); - } - List<SpeciesBatchFrequency> createdFrequencies = assertCreateAndReloadSpeciesBatchFrequency(frequencies, frequenciesParentBatch.getId()); - - // ----------------------------------------------------------------------------- - // 9. Test batch frequency update - // ----------------------------------------------------------------------------- - // Update some batchs (1cm, 2cm, etc) - for (SpeciesBatchFrequency speciesBatchFrequency : createdFrequencies) { - float length = speciesBatchFrequency.getLengthStep(); - if ((float) (int) length == length) { - speciesBatchFrequency.setNumber(12); - speciesBatchFrequency.setComment(null); - } - } - // And remove the last item (should be deleted in DB) - createdFrequencies.remove(createdFrequencies.size()-1); - List<SpeciesBatchFrequency> savedFrequencies = service.saveSpeciesBatchFrequency(frequenciesParentBatch.getId(), frequencies); - assertBatchFrequencies(createdFrequencies, savedFrequencies, true); - } - - @Test - public void deleteSpeciesBatch(/*String id*/) { - SpeciesBatch esp1Batch; - SpeciesBatch batch; - Species taxon1 = species.get(0); - - // ----------------------------------------------------------------------------- - // 1. Create two batchs (parent + child), then remove the parent batch - // ----------------------------------------------------------------------------- - // batch : ESP1 Vrac/5 - batch = new SpeciesBatch(); - batch.setParentBatch(null); - batch.setFishingOperation(fishingOperationWithEmptyBatch); - batch.setSpecies(taxon1); - batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); - batch.setSampleCategoryValue(vracQualitativeValue); - batch.setSampleCategoryWeight(5f); - assertCreateAndReloadSpeciesBatch(batch, null); - esp1Batch = batch; - - // batch : ESP1 Vrac/5 Male/2 - batch = new SpeciesBatch(); - batch.setParentBatch(esp1Batch); - batch.setFishingOperation(fishingOperationWithEmptyBatch); - batch.setSpecies(taxon1); - batch.setSampleCategoryType(SampleCategoryEnum.sex); - batch.setSampleCategoryValue(maleQualitativeValue); - batch.setSampleCategoryWeight(2f); - assertCreateAndReloadSpeciesBatch(batch, esp1Batch.getId()); - - // Try to remove - service.deleteSpeciesBatch(esp1Batch.getId()); - - // Check if remove - try { - batch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), esp1Batch.getId()); - assertNull(batch); - } catch (DataRetrievalFailureException drfe) { - assertNotNull(drfe); - } - } - - protected void assertCreateAndReloadSpeciesBatch(SpeciesBatch batch, String parentBatchId) { - batch.setFishingOperation(fishingOperationWithEmptyBatch); - - // Create batch - SpeciesBatch createdBatch = service.createSpeciesBatch(batch, parentBatchId); - assertSpeciesBatch(batch, createdBatch, false); - - // then reload (for round trip check) - SpeciesBatch reloadedBatch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), createdBatch.getId()); - if (parentBatchId == null) { - assertNull(reloadedBatch.getParentBatch()); - } else { - assertNotNull(reloadedBatch.getParentBatch()); - assertEquals(parentBatchId, reloadedBatch.getParentBatch().getId()); - } - assertSpeciesBatch(createdBatch, reloadedBatch, false); - - batch.setId(createdBatch.getId()); - } - - protected void assertCreateAndReloadCatchBatch(CatchBatch catchBatch, String fishingOperationId) { - CatchBatch createdCatchBatch = service.createCatchBatch(catchBatch); - assertNotNull(createdCatchBatch); - assertNotNull(createdCatchBatch.getId()); - assertCatchBatch(catchBatch, createdCatchBatch, false); - - CatchBatch reloadedCatchBatch = service.getCatchBatchFromFishingOperation(fishingOperationId); - assertCatchBatch(createdCatchBatch, reloadedCatchBatch, true); - - catchBatch.setId(createdCatchBatch.getId()); - } - - protected void assertSaveAndReloadCatchBatch(CatchBatch catchBatch, String fishingOperationId) { - CatchBatch savedCatchBatch = service.saveCatchBatch(catchBatch); - assertNotNull(savedCatchBatch); - assertNotNull(savedCatchBatch.getId()); - assertCatchBatch(catchBatch, savedCatchBatch, false); - - CatchBatch reloadedCatchBatch = service.getCatchBatchFromFishingOperation(fishingOperationId); - assertCatchBatch(savedCatchBatch, reloadedCatchBatch, true); - } - - protected void assertCatchBatch(CatchBatch expectedCatchBatch,CatchBatch actualCatchBatch, boolean assertIdEquals) { - if (expectedCatchBatch == null) { - assertNull(actualCatchBatch); - return; - } - - assertNotNull(actualCatchBatch); - if (assertIdEquals) { - assertEquals(expectedCatchBatch.getId(), actualCatchBatch.getId()); - } - assertEquals(expectedCatchBatch.getCatchTotalWeight(), actualCatchBatch.getCatchTotalWeight()); - assertEquals(expectedCatchBatch.getCatchTotalSortedCarousselWeight(), actualCatchBatch.getCatchTotalSortedCarousselWeight()); - assertEquals(expectedCatchBatch.getCatchTotalSortedTremisWeight(), actualCatchBatch.getCatchTotalSortedTremisWeight()); - assertEquals(expectedCatchBatch.getCatchTotalUnsortedWeight(), actualCatchBatch.getCatchTotalUnsortedWeight()); - - assertEquals(expectedCatchBatch.getSpeciesTotalSampleSortedWeight(), actualCatchBatch.getSpeciesTotalSampleSortedWeight()); - assertEquals(expectedCatchBatch.getSpeciesTotalSortedWeight(), actualCatchBatch.getSpeciesTotalSortedWeight()); - assertEquals(expectedCatchBatch.getSpeciesTotalUnsortedWeight(), actualCatchBatch.getSpeciesTotalUnsortedWeight()); - assertEquals(expectedCatchBatch.getSpeciesTotalInertWeight(), actualCatchBatch.getSpeciesTotalInertWeight()); - assertEquals(expectedCatchBatch.getSpeciesTotalLivingNotItemizedWeight(), actualCatchBatch.getSpeciesTotalLivingNotItemizedWeight()); - } - - protected void assertSpeciesBatch(SpeciesBatch expectedBatch, SpeciesBatch actualBatch, boolean assertIdEquals) { - assertNotNull(actualBatch); - assertNotNull(actualBatch.getId()); - if (assertIdEquals && expectedBatch.getId() != null) { - assertEquals(expectedBatch.getId(), actualBatch.getId()); - } - assertEquals(expectedBatch.getWeight(), actualBatch.getWeight()); - assertEquals(expectedBatch.getSampleCategoryType(), actualBatch.getSampleCategoryType()); - if (expectedBatch.getSampleCategoryValue() != null && expectedBatch.getSampleCategoryValue() instanceof CaracteristicQualitativeValue) { - assertNotNull("Bad sampleCategoryValue : expected <" + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId() + "> but was <null>", - actualBatch.getSampleCategoryValue()); - assertEquals( - ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId(), - ((CaracteristicQualitativeValue) actualBatch.getSampleCategoryValue()).getId()); - } else { - assertEquals(expectedBatch.getSampleCategoryValue(), actualBatch.getSampleCategoryValue()); - } - assertEquals(expectedBatch.getSampleCategoryWeight(), actualBatch.getSampleCategoryWeight()); - assertEquals(expectedBatch.getNumber(), actualBatch.getNumber()); - assertEquals(expectedBatch.getComment(), actualBatch.getComment()); - - // Check species only if Vrac/HorsVrac or if batch has been load throw getAllxxx method - // (Because getSpeciesBatch(id) could not always retrieve the species) - if (expectedBatch.getSpecies() != null && ( - expectedBatch.getSampleCategoryType() == SampleCategoryEnum.sortedUnsorted - || actualBatch.getSpecies() != null)) { - assertNotNull(actualBatch.getSpecies()); - assertEquals(expectedBatch.getSpecies().getId(), actualBatch.getSpecies().getId()); - } - } - protected List<SpeciesBatchFrequency> assertCreateAndReloadSpeciesBatchFrequency(List<SpeciesBatchFrequency> frequencies, String parentBatchId) { - - // Create batch - List<SpeciesBatchFrequency> createdFrequencies = service.saveSpeciesBatchFrequency(parentBatchId, frequencies); - assertBatchFrequencies(frequencies, createdFrequencies, false); - - // then reload (for round trip check) - List<SpeciesBatchFrequency> reloadedFrequencies = service.getAllSpeciesBatchFrequency(parentBatchId); - assertBatchFrequencies(createdFrequencies, reloadedFrequencies, true); - - return createdFrequencies; - } - - protected void assertBatchFrequencies(List<SpeciesBatchFrequency> expectedFrequencies, List<SpeciesBatchFrequency> actualFrequencies, boolean assertIdEquals) { - assertNotNull(actualFrequencies); - assertEquals(expectedFrequencies.size(), actualFrequencies.size()); - - // Store actual batches into a map, using the length as key - Map<Float, SpeciesBatchFrequency> expectedLengthMap = Maps.newHashMap(); - for (SpeciesBatchFrequency speciesBatchFrequency : expectedFrequencies) { - expectedLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); - } - - // Store expected batches into a map, using the length as key - Map<Float, SpeciesBatchFrequency> actualLengthMap = Maps.newHashMap(); - for (SpeciesBatchFrequency speciesBatchFrequency : actualFrequencies) { - assertFalse("Duplicate lengthStep found in batchFrequencies, for length=" + speciesBatchFrequency.getLengthStep(), actualLengthMap.containsKey(speciesBatchFrequency.getLengthStep())); - actualLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); - assertNotNull(speciesBatchFrequency.getId()); - } - - for (Float lengthStep : expectedLengthMap.keySet()) { - SpeciesBatchFrequency expectedBatchFrequency = expectedLengthMap.get(lengthStep); - SpeciesBatchFrequency actualBatchFrequency = actualLengthMap.get(lengthStep); - if (assertIdEquals) { - assertEquals(expectedBatchFrequency.getId(), actualBatchFrequency.getId()); - } - assertNotNull(expectedBatchFrequency.getLengthStepCaracteristic()); - assertEquals(expectedBatchFrequency.getLengthStepCaracteristic().getId(), actualBatchFrequency.getLengthStepCaracteristic().getId()); - assertEquals(expectedBatchFrequency.getNumber(), actualBatchFrequency.getNumber()); - assertEquals(expectedBatchFrequency.getWeight(), actualBatchFrequency.getWeight()); - assertEquals(expectedBatchFrequency.getComment(), actualBatchFrequency.getComment()); - //assertNotNull(expectedBatchFrequency.getBatch()); - //assertEquals(expectedBatchFrequency.getBatch().getId(), actualBatchFrequency.getBatch().getId()); - } - } - - protected SpeciesBatch getSpeciesBatch(String fishingOperationId, String speciesBatchId) { - return getSpeciesBatch(speciesBatchId, service.getAllRootSpeciesBatch(fishingOperationId)); - } - - protected SpeciesBatch getSpeciesBatch(String speciesBatchId, List<SpeciesBatch> speciesBatchs) { - if (speciesBatchs == null) { - return null; - } - for (SpeciesBatch speciesBatch : speciesBatchs) { - if (speciesBatchId.equals(speciesBatch.getId())) { - return speciesBatch; - } - if (speciesBatch.getChildBatchs() != null) { - speciesBatch = getSpeciesBatch(speciesBatchId, speciesBatch.getChildBatchs()); - if (speciesBatch != null) { - return speciesBatch; - } - } - } - return null; - } -} +package fr.ifremer.tutti.persistence.service; + +/* + * #%L + * Tutti :: Persistence API + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.DatabaseResource; +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.SampleCategoryEnum; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicType; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import org.junit.Before; +import org.junit.ClassRule; +import org.junit.Ignore; +import org.junit.Test; +import org.springframework.dao.DataRetrievalFailureException; + +import com.google.common.collect.Lists; +import com.google.common.collect.Maps; + +import java.util.Calendar; +import java.util.Date; +import java.util.GregorianCalendar; +import java.util.List; +import java.util.Map; + +import static org.junit.Assert.assertEquals; +import static org.junit.Assert.assertNotNull; +import static org.junit.Assert.*; + +/** + * To test {@link CatchBatchPersistenceService} for write operation. + * + * @author tchemit <chemit(a)codelutin.com> + * @since 1.0 + */ +public class BatchPersistenceServiceWriteTest { + + @ClassRule + public static final DatabaseResource dbResource = DatabaseResource.writeDb(); + + protected BatchPersistenceService service; + + protected CruisePersistenceService cruiseService; + + protected FishingOperationPersistenceService fishingOperationService; + + protected CatchBatchPersistenceService catchBatchService; + + protected ReferentialPersistenceService referentialService; + + protected Cruise cruise; + + protected FishingOperation fishingOperationNoCatchBatch; + + protected FishingOperation fishingOperationWithEmptyBatch; + + protected CatchBatch catchBacth; + + protected List<Species> species; + + protected Caracteristic sortedUnsortedPMFM; + + protected CaracteristicQualitativeValue horsVracQualitativeValue; + + protected CaracteristicQualitativeValue vracQualitativeValue; + + protected Caracteristic maturityPMFM; + + protected CaracteristicQualitativeValue firstMaturityQualitativeValue; + + protected Caracteristic sexPMFM; + + protected CaracteristicQualitativeValue maleQualitativeValue; + + protected CaracteristicQualitativeValue femaleQualitativeValue; + + protected CaracteristicQualitativeValue unkQualitativeValue; + + protected Caracteristic frequencyPMFM; + + @Before + public void setUp() throws Exception { + service = TuttiPersistenceServiceLocator.getBatchPersistenceService(); + cruiseService = TuttiPersistenceServiceLocator.getCruisePersistenceService(); + fishingOperationService = TuttiPersistenceServiceLocator.getFishingOperationPersistenceService(); + catchBatchService = TuttiPersistenceServiceLocator.getCatchBatchPersistenceService(); + referentialService = TuttiPersistenceServiceLocator.getReferentialPersistenceService(); + + species = referentialService.getAllSpecies(); + assertNotNull(species); + assertTrue(species.size() > 2); + + cruise = cruiseService.getCruise(dbResource.getFixtures().cruiseId()); + cruise.setId(null); + Calendar calendar = new GregorianCalendar(); + cruise.setBeginDate(calendar.getTime()); + cruise.setYear(calendar.get(Calendar.YEAR)); + calendar.add(Calendar.MONTH, 1); // add one month + cruise.setEndDate(calendar.getTime()); + cruise = cruiseService.createCruise(cruise); + + // Create a first operation, with no cacth batch : to test CatchBatch insert/update : + List<FishingOperation> fishingOperations = fishingOperationService.getAllFishingOperation(dbResource.getFixtures().cruiseId()); + assertNotNull(fishingOperations); + assertTrue(fishingOperations.size() > 0); + fishingOperationNoCatchBatch = fishingOperations.get(0); + fishingOperationNoCatchBatch = fishingOperationService.getFishingOperation(fishingOperationNoCatchBatch.getId()); + fishingOperationNoCatchBatch.setId(null); + fishingOperationNoCatchBatch.setCruise(cruise); + calendar.setTime(new Date()); + calendar.set(Calendar.HOUR_OF_DAY, 1); + calendar.set(Calendar.MILLISECOND, 0); + fishingOperationNoCatchBatch.setGearShootingStartDate(calendar.getTime()); + calendar.setTime(new Date()); + calendar.set(Calendar.HOUR_OF_DAY, 10); + calendar.set(Calendar.MILLISECOND, 0); + fishingOperationNoCatchBatch.setGearShootingEndDate(calendar.getTime()); + fishingOperationNoCatchBatch = fishingOperationService.createFishingOperation(fishingOperationNoCatchBatch); + + // Create a second operation, with no cacth batch : to test CatchBatch insert/update : + fishingOperationWithEmptyBatch = fishingOperations.get(1); + fishingOperationWithEmptyBatch = fishingOperationService.getFishingOperation(fishingOperationWithEmptyBatch.getId()); + fishingOperationWithEmptyBatch.setId(null); + fishingOperationWithEmptyBatch.setCruise(cruise); + calendar.setTime(new Date()); + calendar.set(Calendar.HOUR_OF_DAY, 11); + calendar.set(Calendar.MILLISECOND, 0); + fishingOperationWithEmptyBatch.setGearShootingStartDate(calendar.getTime()); + calendar.setTime(new Date()); + calendar.set(Calendar.HOUR_OF_DAY, 12); + calendar.set(Calendar.MILLISECOND, 0); + fishingOperationWithEmptyBatch.setGearShootingEndDate(calendar.getTime()); + fishingOperationWithEmptyBatch = fishingOperationService.createFishingOperation(fishingOperationWithEmptyBatch); + + catchBacth = new CatchBatch(); + catchBacth.setFishingOperation(fishingOperationWithEmptyBatch); + catchBacth = catchBatchService.createCatchBatch(catchBacth); + + sortedUnsortedPMFM = referentialService.getSortedUnsortedCaracteristic(); + horsVracQualitativeValue = sortedUnsortedPMFM.getQualitativeValue(0); + vracQualitativeValue = sortedUnsortedPMFM.getQualitativeValue(1); + maturityPMFM = referentialService.getMaturityCaracteristic(); + firstMaturityQualitativeValue = maturityPMFM.getQualitativeValue(0); + sexPMFM = referentialService.getSexCaracteristic(); + maleQualitativeValue = sexPMFM.getQualitativeValue(1); + femaleQualitativeValue = sexPMFM.getQualitativeValue(2); + unkQualitativeValue = sexPMFM.getQualitativeValue(3); + + List<Caracteristic> cara = referentialService.getAllCaracteristic(); + for (Caracteristic caracteristic : cara) { + if (caracteristic.getCaracteristicType() == CaracteristicType.NUMBER + && caracteristic.getPrecision() != null + && caracteristic.getPrecision() == 0.5f) { + frequencyPMFM = caracteristic; + break; + } + } + assertNotNull("no numerical PMFM with a precision has been found. Could not define a PMFM for batch frequencies.", frequencyPMFM); + + } + + @Test + public void createAndSaveCatchBatch() throws Exception { + CatchBatch catchBatch; + + catchBatch = new CatchBatch(); + catchBatch.setFishingOperation(fishingOperationNoCatchBatch); + + // ----------------------------------------------------------------------------- + // 1. Test with only mandatory properties + // ----------------------------------------------------------------------------- + + // Create and reload (test round trip) + assertCreateAndReloadCatchBatch(catchBatch, fishingOperationNoCatchBatch.getId()); + + // ----------------------------------------------------------------------------- + // 2. Test with all properties + // ----------------------------------------------------------------------------- + catchBatch.setId(null); + // total weight : 100kg + catchBatch.setCatchTotalWeight(75f); + // Vrac : + { + // note : poids trie par la balance tremis (thalassa) (init par pupitri) + catchBatch.setCatchTotalSortedTremisWeight(50f); + // note : poids vrac caroussel (thalassa) (init par pupitri) (vrac trie) ou bien "poids trié fournie par la table de tri (Sum(Si) + catchBatch.setCatchTotalSortedCarousselWeight(45f); + + // Species + { + catchBatch.setSpeciesTotalSortedWeight(12f); + catchBatch.setSpeciesTotalSampleSortedWeight(8f); + catchBatch.setSpeciesTotalLivingNotItemizedWeight(0.2f); + catchBatch.setSpeciesTotalInertWeight(0.1f); + } + } + // Hors Vrac : 10kg + { + catchBatch.setCatchTotalUnsortedWeight(10f); + + // Species + { + catchBatch.setSpeciesTotalUnsortedWeight(10f); + } + } + // Rejet : 15kg + catchBatch.setCatchTotalRejectedWeight(15f); + + // Create and reload (test round trip) + assertCreateAndReloadCatchBatch(catchBatch, fishingOperationNoCatchBatch.getId()); + + // ----------------------------------------------------------------------------- + // 2. Test save after modification + // ----------------------------------------------------------------------------- + catchBatch.setCatchTotalSortedTremisWeight(null); + catchBatch.setCatchTotalSortedCarousselWeight(null); + catchBatch.setSpeciesTotalSortedWeight(null); + catchBatch.setSpeciesTotalSampleSortedWeight(null); + catchBatch.setCatchTotalUnsortedWeight(null); + catchBatch.setSpeciesTotalUnsortedWeight(null); + + assertSaveAndReloadCatchBatch(catchBatch, fishingOperationNoCatchBatch.getId()); + } + + @Test + public void createAndSaveSpeciesBatchAndFrequencies() { + SpeciesBatch esp1Batch = null; + SpeciesBatch esp2Batch = null; + SpeciesBatch frequenciesParentBatch = null; + SpeciesBatch batch = null; + Species taxon1 = species.get(0); + Species taxon2 = species.get(1); + + // ----------------------------------------------------------------------------- + // 1. Test with only mandatory properties + // ----------------------------------------------------------------------------- + // batch : "ESP1 - Vrac/5" + batch = new SpeciesBatch(); + batch.setParentBatch(null); + batch.setFishingOperation(fishingOperationNoCatchBatch); + batch.setSpecies(taxon1); + batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); + batch.setSampleCategoryValue(vracQualitativeValue); + batch.setSampleCategoryWeight(5f); + + assertCreateAndReloadSpeciesBatch(batch, null); + + // Save ESP1 batch + esp1Batch = batch; + + // ----------------------------------------------------------------------------- + // 2. Test child "Male/2" + // ----------------------------------------------------------------------------- + // Batch : ESP1 - Vrac/5 Male/2 ss-ech/1 Nombre/7 + batch = new SpeciesBatch(); + batch.setId(null); + batch.setParentBatch(esp1Batch); + batch.setSpecies(taxon1); + batch.setComment("ESP1 - Vrac/5 Male/2 ss-ech/1 Nombre/7"); + batch.setSampleCategoryType(SampleCategoryEnum.sex); + batch.setSampleCategoryValue(maleQualitativeValue); + batch.setSampleCategoryWeight(2f); + batch.setWeight(1f); + batch.setNumber(7); + + assertCreateAndReloadSpeciesBatch(batch, batch.getParentBatch().getId()); + + // ----------------------------------------------------------------------------- + // 3. Test child "Female/2" + // ----------------------------------------------------------------------------- + // Batch : ESP1 - Vrac/5 Female/3 Nombre/14 + batch = new SpeciesBatch(); + batch.setId(null); + batch.setParentBatch(esp1Batch); + batch.setSpecies(taxon1); + batch.setComment("ESP1 - Vrac/5 Female/3 Nombre/14"); + batch.setSampleCategoryType(SampleCategoryEnum.sex); + batch.setSampleCategoryValue(femaleQualitativeValue); + batch.setSampleCategoryWeight(3f); + batch.setWeight(null); + batch.setNumber(14); + + assertCreateAndReloadSpeciesBatch(batch, batch.getParentBatch().getId()); + + // ----------------------------------------------------------------------------- + // 4. Test : ESP2 - Vrac/7 + // \- ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11 + // ----------------------------------------------------------------------------- + // batch : "ESP2 - Vrac/7 " + batch = new SpeciesBatch(); + batch.setParentBatch(null); + batch.setSpecies(taxon2); + batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); + batch.setSampleCategoryValue(vracQualitativeValue); + batch.setSampleCategoryWeight(7f); + + assertCreateAndReloadSpeciesBatch(batch, null); + esp2Batch = batch; + + // Batch : ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11 + batch = new SpeciesBatch(); + batch.setId(null); + batch.setParentBatch(esp2Batch); + batch.setSpecies(taxon2); + batch.setComment("ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11"); + batch.setSampleCategoryType(SampleCategoryEnum.maturity); + batch.setSampleCategoryValue(firstMaturityQualitativeValue); + batch.setSampleCategoryWeight(2f); + batch.setWeight(1f); + batch.setNumber(11); + + assertCreateAndReloadSpeciesBatch(batch, batch.getParentBatch().getId()); + + // ----------------------------------------------------------------------------- + // 5. Test save after modifications + // ----------------------------------------------------------------------------- + // Batch : ESP2 - Vrac/7 UNK/1.75 ss-ech/1.11 Nombre/99 + batch.setComment("ESP2 - Vrac/7 UNK/1.75 ss-ech/1.11 Nombre/99"); + batch.setSampleCategoryType(SampleCategoryEnum.sex); + batch.setSampleCategoryValue(unkQualitativeValue); + batch.setSampleCategoryWeight(1.75f); + batch.setWeight(1.11f); + batch.setFishingOperation(fishingOperationWithEmptyBatch); + batch.setNumber(99); + + // Save and reload, then check + SpeciesBatch savedBatch = service.saveSpeciesBatch(batch); + assertSpeciesBatch(savedBatch, batch, false); + SpeciesBatch reloadedBatch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), savedBatch.getId()); + assertSpeciesBatch(savedBatch, reloadedBatch, true); + + // Save batch for later + frequenciesParentBatch = batch; + + // ----------------------------------------------------------------------------- + // 6. Test change species + // ----------------------------------------------------------------------------- + esp2Batch.setSpecies(taxon1); + service.changeSpeciesBatchSpecies(esp2Batch.getId(), taxon1); + assertSpeciesBatch(savedBatch, batch, false); + reloadedBatch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), esp2Batch.getId()); + assertSpeciesBatch(esp2Batch, reloadedBatch, true); + + // ----------------------------------------------------------------------------- + // 7. Test get all root species + // ----------------------------------------------------------------------------- + List<SpeciesBatch> rootSpeciesBatch = service.getAllRootSpeciesBatch(fishingOperationWithEmptyBatch.getId()); + assertNotNull(rootSpeciesBatch); + assertEquals(2, rootSpeciesBatch.size()); + assertNotNull(rootSpeciesBatch.get(0).getChildBatchs()); + assertTrue(rootSpeciesBatch.get(0).getChildBatchs().size() > 0); + assertNotNull(rootSpeciesBatch.get(1).getChildBatchs()); + assertTrue(rootSpeciesBatch.get(1).getChildBatchs().size() > 0); + + // ----------------------------------------------------------------------------- + // 8. Test batch frequency creation + // ----------------------------------------------------------------------------- + + List<SpeciesBatchFrequency> frequencies = Lists.newArrayList(); + float lengthStep = 0.5f; + for (float length = lengthStep; length < lengthStep * 20; length += lengthStep) { + SpeciesBatchFrequency frequency = new SpeciesBatchFrequency(); + frequency.setLengthStep(length); + frequency.setNumber((int) (length * 2)); + frequency.setWeight(0.01f * length * 2); + frequency.setLengthStepCaracteristic(frequencyPMFM); + frequency.setBatch(frequenciesParentBatch); + frequency.setComment("comments"); + frequencies.add(frequency); + } + List<SpeciesBatchFrequency> createdFrequencies = assertCreateAndReloadSpeciesBatchFrequency(frequencies, frequenciesParentBatch.getId()); + + // ----------------------------------------------------------------------------- + // 9. Test batch frequency update + // ----------------------------------------------------------------------------- + // Update some batchs (1cm, 2cm, etc) + for (SpeciesBatchFrequency speciesBatchFrequency : createdFrequencies) { + float length = speciesBatchFrequency.getLengthStep(); + if ((float) (int) length == length) { + speciesBatchFrequency.setNumber(12); + speciesBatchFrequency.setComment(null); + } + } + // And remove the last item (should be deleted in DB) + createdFrequencies.remove(createdFrequencies.size()-1); + List<SpeciesBatchFrequency> savedFrequencies = service.saveSpeciesBatchFrequency(frequenciesParentBatch.getId(), frequencies); + assertBatchFrequencies(createdFrequencies, savedFrequencies, true); + } + + @Test + public void deleteSpeciesBatch(/*String id*/) { + SpeciesBatch esp1Batch; + SpeciesBatch batch; + Species taxon1 = species.get(0); + + // ----------------------------------------------------------------------------- + // 1. Create two batchs (parent + child), then remove the parent batch + // ----------------------------------------------------------------------------- + // batch : ESP1 Vrac/5 + batch = new SpeciesBatch(); + batch.setParentBatch(null); + batch.setFishingOperation(fishingOperationWithEmptyBatch); + batch.setSpecies(taxon1); + batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); + batch.setSampleCategoryValue(vracQualitativeValue); + batch.setSampleCategoryWeight(5f); + assertCreateAndReloadSpeciesBatch(batch, null); + esp1Batch = batch; + + // batch : ESP1 Vrac/5 Male/2 + batch = new SpeciesBatch(); + batch.setParentBatch(esp1Batch); + batch.setFishingOperation(fishingOperationWithEmptyBatch); + batch.setSpecies(taxon1); + batch.setSampleCategoryType(SampleCategoryEnum.sex); + batch.setSampleCategoryValue(maleQualitativeValue); + batch.setSampleCategoryWeight(2f); + assertCreateAndReloadSpeciesBatch(batch, esp1Batch.getId()); + + // Try to remove + service.deleteSpeciesBatch(esp1Batch.getId()); + + // Check if remove + try { + batch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), esp1Batch.getId()); + assertNull(batch); + } catch (DataRetrievalFailureException drfe) { + assertNotNull(drfe); + } + } + + protected void assertCreateAndReloadSpeciesBatch(SpeciesBatch batch, String parentBatchId) { + batch.setFishingOperation(fishingOperationWithEmptyBatch); + + // Create batch + SpeciesBatch createdBatch = service.createSpeciesBatch(batch, parentBatchId); + assertSpeciesBatch(batch, createdBatch, false); + + // then reload (for round trip check) + SpeciesBatch reloadedBatch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), createdBatch.getId()); + if (parentBatchId == null) { + assertNull(reloadedBatch.getParentBatch()); + } else { + assertNotNull(reloadedBatch.getParentBatch()); + assertEquals(parentBatchId, reloadedBatch.getParentBatch().getId()); + } + assertSpeciesBatch(createdBatch, reloadedBatch, false); + + batch.setId(createdBatch.getId()); + } + + protected void assertCreateAndReloadCatchBatch(CatchBatch catchBatch, String fishingOperationId) { + CatchBatch createdCatchBatch = service.createCatchBatch(catchBatch); + assertNotNull(createdCatchBatch); + assertNotNull(createdCatchBatch.getId()); + assertCatchBatch(catchBatch, createdCatchBatch, false); + + CatchBatch reloadedCatchBatch = service.getCatchBatchFromFishingOperation(fishingOperationId); + assertCatchBatch(createdCatchBatch, reloadedCatchBatch, true); + + catchBatch.setId(createdCatchBatch.getId()); + } + + protected void assertSaveAndReloadCatchBatch(CatchBatch catchBatch, String fishingOperationId) { + CatchBatch savedCatchBatch = service.saveCatchBatch(catchBatch); + assertNotNull(savedCatchBatch); + assertNotNull(savedCatchBatch.getId()); + assertCatchBatch(catchBatch, savedCatchBatch, false); + + CatchBatch reloadedCatchBatch = service.getCatchBatchFromFishingOperation(fishingOperationId); + assertCatchBatch(savedCatchBatch, reloadedCatchBatch, true); + } + + protected void assertCatchBatch(CatchBatch expectedCatchBatch,CatchBatch actualCatchBatch, boolean assertIdEquals) { + if (expectedCatchBatch == null) { + assertNull(actualCatchBatch); + return; + } + + assertNotNull(actualCatchBatch); + if (assertIdEquals) { + assertEquals(expectedCatchBatch.getId(), actualCatchBatch.getId()); + } + assertEquals(expectedCatchBatch.getCatchTotalWeight(), actualCatchBatch.getCatchTotalWeight()); + assertEquals(expectedCatchBatch.getCatchTotalSortedCarousselWeight(), actualCatchBatch.getCatchTotalSortedCarousselWeight()); + assertEquals(expectedCatchBatch.getCatchTotalSortedTremisWeight(), actualCatchBatch.getCatchTotalSortedTremisWeight()); + assertEquals(expectedCatchBatch.getCatchTotalUnsortedWeight(), actualCatchBatch.getCatchTotalUnsortedWeight()); + + assertEquals(expectedCatchBatch.getSpeciesTotalSampleSortedWeight(), actualCatchBatch.getSpeciesTotalSampleSortedWeight()); + assertEquals(expectedCatchBatch.getSpeciesTotalSortedWeight(), actualCatchBatch.getSpeciesTotalSortedWeight()); + assertEquals(expectedCatchBatch.getSpeciesTotalUnsortedWeight(), actualCatchBatch.getSpeciesTotalUnsortedWeight()); + assertEquals(expectedCatchBatch.getSpeciesTotalInertWeight(), actualCatchBatch.getSpeciesTotalInertWeight()); + assertEquals(expectedCatchBatch.getSpeciesTotalLivingNotItemizedWeight(), actualCatchBatch.getSpeciesTotalLivingNotItemizedWeight()); + } + + protected void assertSpeciesBatch(SpeciesBatch expectedBatch, SpeciesBatch actualBatch, boolean assertIdEquals) { + assertNotNull(actualBatch); + assertNotNull(actualBatch.getId()); + if (assertIdEquals && expectedBatch.getId() != null) { + assertEquals(expectedBatch.getId(), actualBatch.getId()); + } + assertEquals(expectedBatch.getWeight(), actualBatch.getWeight()); + assertEquals(expectedBatch.getSampleCategoryType(), actualBatch.getSampleCategoryType()); + if (expectedBatch.getSampleCategoryValue() != null && expectedBatch.getSampleCategoryValue() instanceof CaracteristicQualitativeValue) { + assertNotNull("Bad sampleCategoryValue : expected <" + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId() + "> but was <null>", + actualBatch.getSampleCategoryValue()); + assertEquals( + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId(), + ((CaracteristicQualitativeValue) actualBatch.getSampleCategoryValue()).getId()); + } else { + assertEquals(expectedBatch.getSampleCategoryValue(), actualBatch.getSampleCategoryValue()); + } + assertEquals(expectedBatch.getSampleCategoryWeight(), actualBatch.getSampleCategoryWeight()); + assertEquals(expectedBatch.getNumber(), actualBatch.getNumber()); + assertEquals(expectedBatch.getComment(), actualBatch.getComment()); + + // Check species only if Vrac/HorsVrac or if batch has been load throw getAllxxx method + // (Because getSpeciesBatch(id) could not always retrieve the species) + if (expectedBatch.getSpecies() != null && ( + expectedBatch.getSampleCategoryType() == SampleCategoryEnum.sortedUnsorted + || actualBatch.getSpecies() != null)) { + assertNotNull(actualBatch.getSpecies()); + assertEquals(expectedBatch.getSpecies().getId(), actualBatch.getSpecies().getId()); + } + } + protected List<SpeciesBatchFrequency> assertCreateAndReloadSpeciesBatchFrequency(List<SpeciesBatchFrequency> frequencies, String parentBatchId) { + + // Create batch + List<SpeciesBatchFrequency> createdFrequencies = service.saveSpeciesBatchFrequency(parentBatchId, frequencies); + assertBatchFrequencies(frequencies, createdFrequencies, false); + + // then reload (for round trip check) + List<SpeciesBatchFrequency> reloadedFrequencies = service.getAllSpeciesBatchFrequency(parentBatchId); + assertBatchFrequencies(createdFrequencies, reloadedFrequencies, true); + + return createdFrequencies; + } + + protected void assertBatchFrequencies(List<SpeciesBatchFrequency> expectedFrequencies, List<SpeciesBatchFrequency> actualFrequencies, boolean assertIdEquals) { + assertNotNull(actualFrequencies); + assertEquals(expectedFrequencies.size(), actualFrequencies.size()); + + // Store actual batches into a map, using the length as key + Map<Float, SpeciesBatchFrequency> expectedLengthMap = Maps.newHashMap(); + for (SpeciesBatchFrequency speciesBatchFrequency : expectedFrequencies) { + expectedLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); + } + + // Store expected batches into a map, using the length as key + Map<Float, SpeciesBatchFrequency> actualLengthMap = Maps.newHashMap(); + for (SpeciesBatchFrequency speciesBatchFrequency : actualFrequencies) { + assertFalse("Duplicate lengthStep found in batchFrequencies, for length=" + speciesBatchFrequency.getLengthStep(), actualLengthMap.containsKey(speciesBatchFrequency.getLengthStep())); + actualLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); + assertNotNull(speciesBatchFrequency.getId()); + } + + for (Float lengthStep : expectedLengthMap.keySet()) { + SpeciesBatchFrequency expectedBatchFrequency = expectedLengthMap.get(lengthStep); + SpeciesBatchFrequency actualBatchFrequency = actualLengthMap.get(lengthStep); + if (assertIdEquals) { + assertEquals(expectedBatchFrequency.getId(), actualBatchFrequency.getId()); + } + assertNotNull(expectedBatchFrequency.getLengthStepCaracteristic()); + assertEquals(expectedBatchFrequency.getLengthStepCaracteristic().getId(), actualBatchFrequency.getLengthStepCaracteristic().getId()); + assertEquals(expectedBatchFrequency.getNumber(), actualBatchFrequency.getNumber()); + assertEquals(expectedBatchFrequency.getWeight(), actualBatchFrequency.getWeight()); + assertEquals(expectedBatchFrequency.getComment(), actualBatchFrequency.getComment()); + //assertNotNull(expectedBatchFrequency.getBatch()); + //assertEquals(expectedBatchFrequency.getBatch().getId(), actualBatchFrequency.getBatch().getId()); + } + } + + protected SpeciesBatch getSpeciesBatch(String fishingOperationId, String speciesBatchId) { + return getSpeciesBatch(speciesBatchId, service.getAllRootSpeciesBatch(fishingOperationId)); + } + + protected SpeciesBatch getSpeciesBatch(String speciesBatchId, List<SpeciesBatch> speciesBatchs) { + if (speciesBatchs == null) { + return null; + } + for (SpeciesBatch speciesBatch : speciesBatchs) { + if (speciesBatchId.equals(speciesBatch.getId())) { + return speciesBatch; + } + if (speciesBatch.getChildBatchs() != null) { + speciesBatch = getSpeciesBatch(speciesBatchId, speciesBatch.getChildBatchs()); + if (speciesBatch != null) { + return speciesBatch; + } + } + } + return null; + } +} Property changes on: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceWriteTest.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Modified: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeHelperTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeHelperTest.java 2013-02-14 15:27:16 UTC (rev 413) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeHelperTest.java 2013-02-14 23:53:34 UTC (rev 414) @@ -631,82 +631,6 @@ updateTable(TuttiTable.AGGREGATION_LEVEL, internalDb, internalConnection, externalConnection, fromDate, 1, 0); } - @Test - public void synchronize() throws IOException, SQLException { - - createInternalConnection(); - - TuttiDatabaseMetadata internalDb = - helper.loadDatabaseMetadata(internalConnection, dialect); - Assert.assertNotNull(internalDb); - - createExternalDb(); - - // synchronize from main db to empty db - - ReferentialSynchronizeResult result = - helper.synchronize(externalConnectionProperties, - localConnectionProperties, - dialect); - - // same referentiel in both db - Assert.assertNotNull(result); - Assert.assertNull(result.getError()); - - DatabaseSynchroFixtures fixturesExternal; - DatabaseSynchroFixtures fixturesInternal; - - fixturesInternal = new DatabaseSynchroFixtures( - helper, internalDb, internalConnection); - fixturesExternal = new DatabaseSynchroFixtures( - helper, internalDb, externalConnection); - - for (TuttiTable tuttiTable : TuttiTable.values()) { - String tableName = tuttiTable.name(); - int nbInserts = result.getNbInserts(tableName); - int nbUpdates = result.getNbUpdates(tableName); - int expected = fixturesInternal.count(tuttiTable); - Assert.assertEquals(String.format("Table %s Should found %s inserts, but was only %s", tableName, expected, nbInserts), expected, nbInserts, 0); - Assert.assertEquals(String.format("Table %s Should found %s updates, but was only %s", tableName, 0, nbUpdates), 0, nbUpdates, 0); - Assert.assertEquals(String.format("Table %s Should found %s rows, but was only %s", tableName, fixturesInternal.count(tuttiTable), nbUpdates), fixturesInternal.count(tuttiTable), fixturesExternal.count(tuttiTable), 0); - } - - // add a new status - internalConnection.prepareStatement("INSERT INTO STATUS(CODE, NAME) VALUES (4, 'NEW')").executeUpdate(); - - // add a new aggregation_level - internalConnection.prepareStatement("INSERT INTO AGGREGATION_LEVEL (ID, NAME, RANK_ORDER, UPDATE_DATE) VALUES (-1000, 'NAME', -1000, NULL)").executeUpdate(); - - // update a unit - PreparedStatement preparedStatement = internalConnection.prepareStatement("UPDATE UNIT SET SYMBOL = 'Auncun un?', UPDATE_DATE=? WHERE ID=1"); - preparedStatement.setDate(1, new java.sql.Date(System.currentTimeMillis())); - preparedStatement.executeUpdate(); - - internalConnection.commit(); - - fixturesInternal = new DatabaseSynchroFixtures( - helper, internalDb, internalConnection); - - result = helper.synchronize(externalConnectionProperties, - localConnectionProperties, - dialect); - Assert.assertNotNull(result); - Assert.assertNull(result.getError()); - - fixturesExternal = new DatabaseSynchroFixtures( - helper, internalDb, externalConnection); - - for (TuttiTable tuttiTable : TuttiTable.values()) { - String tableName = tuttiTable.name(); - - int internalCount = fixturesInternal.count(tuttiTable); - int externalCount = fixturesExternal.count(tuttiTable); - - Assert.assertEquals(String.format("Table %s Should found %s rows, but was only %s", tableName, internalCount, externalCount), internalCount, externalCount, 0); - } - - } - protected ResultSet getDataToUpdate(TuttiTable tuttiTable, TuttiDatabaseMetadata db, Connection connection, Modified: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeServiceImplTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeServiceImplTest.java 2013-02-14 15:27:16 UTC (rev 413) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeServiceImplTest.java 2013-02-14 23:53:34 UTC (rev 414) @@ -25,6 +25,7 @@ */ import fr.ifremer.tutti.persistence.DatabaseResource; +import fr.ifremer.tutti.persistence.ProgressionModel; import fr.ifremer.tutti.persistence.entities.TuttiEntities; import fr.ifremer.tutti.persistence.service.TuttiPersistenceServiceLocator; import org.hibernate.dialect.Dialect; @@ -37,6 +38,12 @@ import org.junit.rules.TestName; import org.springframework.jdbc.support.JdbcUtils; +import javax.swing.JDialog; +import javax.swing.JProgressBar; +import java.awt.Frame; +import java.awt.GraphicsEnvironment; +import java.beans.PropertyChangeEvent; +import java.beans.PropertyChangeListener; import java.sql.Connection; import java.sql.PreparedStatement; import java.sql.SQLException; @@ -69,6 +76,8 @@ protected ReferentialSynchronizeHelper helper; + protected JDialog dialog; + @Before public void setUp() throws Exception { @@ -91,6 +100,9 @@ @After public void tearDown() throws Exception { + if (dialog != null) { + dialog.setVisible(false); + } service = null; remoteConnectionProperties = null; dialect = null; @@ -107,7 +119,6 @@ DatabaseSynchroFixtures fixturesRemote; DatabaseSynchroFixtures fixturesLocal; - ReferentialSynchronizeResult result; // add some stuff on remote db @@ -127,12 +138,69 @@ fixturesRemote = new DatabaseSynchroFixtures( helper, remoteSchema, remoteConnection); - result = service.synchronize(remoteConnectionProperties); + fixturesLocal = new DatabaseSynchroFixtures( + helper, remoteSchema, localConnection); - // same referentiel in both db + ReferentialSynchronizeResult result = + new ReferentialSynchronizeResult(); + + + dialog = createProgressBar(result); + + service.prepare(remoteConnectionProperties, result); + Assert.assertNotNull(result); Assert.assertNull(result.getError()); + Assert.assertTrue(result.isSuccess()); + // on entities, only updates in table is with no update_date + for (TuttiTable tuttiTable : TuttiTable.getEntityTables()) { + String tableName = tuttiTable.name(); + int nbLocal = fixturesLocal.count(tuttiTable); + int nbRemote = fixturesRemote.count(tuttiTable); + int nbRows = result.getNbRows(tableName); + int expectedRows = 0; + TuttiTableMetadata table = remoteSchema.getTable(tableName); + if (!table.isWithUpdateDateColumn()) { + // updates everything + expectedRows = nbRemote; + } + + switch (tuttiTable) { + case STATUS: + nbLocal++; + break; + + case UNIT: + expectedRows = 1; + break; + + case AGGREGATION_LEVEL: + nbLocal++; + expectedRows = 1; + break; + } + Assert.assertEquals(String.format("Table %s Should found %s rows, but was only %s", tableName, nbRemote, nbLocal), nbRemote, nbLocal, 0); + Assert.assertEquals(String.format("Table %s Should found %s rows to treat, but was only %s", tableName, expectedRows, nbRows), expectedRows, nbRows, 0); + } + + // on associations, only inserts + for (TuttiTable tuttiTable : TuttiTable.getAssociationTables()) { + String tableName = tuttiTable.name(); + int nbLocal = fixturesLocal.count(tuttiTable); + int nbRemote = fixturesRemote.count(tuttiTable); + int nbRows = result.getNbRows(tableName); + int expectedRows = nbRemote; + Assert.assertEquals(String.format("Table %s Should found %s rows, but was only %s", tableName, nbRemote, nbLocal), nbRemote, nbLocal, 0); + Assert.assertEquals(String.format("Table %s Should found %s rows to treat, but was only %s", tableName, expectedRows, nbRows), expectedRows, nbRows, 0); + } + + service.synchronize(remoteConnectionProperties, result); + + Assert.assertEquals(result.getTotalRows(), result.getProgressionModel().getTotal()); + Assert.assertEquals(result.getProgressionModel().getTotal(), result.getProgressionModel().getCurrent()); + Assert.assertEquals(1.0, result.getProgressionModel().getRate(), 0.01); + fixturesLocal = new DatabaseSynchroFixtures( helper, remoteSchema, localConnection); @@ -187,6 +255,45 @@ Assert.assertEquals(String.format("Table %s Should found %s updates, but was only %s", tableName, expectedUpdates, nbUpdates), expectedUpdates, nbUpdates, 0); Assert.assertEquals(String.format("Table %s Should found %s rows treated, but was only %s", tableName, expectedRows, nbInserts + nbUpdates), expectedRows, nbInserts + nbUpdates, 0); } + } + public static JDialog createProgressBar(ReferentialSynchronizeResult result) { + + JDialog dialog; + if (GraphicsEnvironment.isHeadless()) { + dialog = null; + } else { + dialog = new JDialog((Frame) null, + "synchronisation " + result.getLocalUrl() + " from " + result.getRemoteUrl(), + false); + dialog.setSize(600, 400); + final JProgressBar progressBar = new JProgressBar(); + progressBar.setStringPainted(true); + progressBar.setIndeterminate(false); + ProgressionModel progressionModel = result.getProgressionModel(); + progressionModel.addPropertyChangeListener(ProgressionModel.PROPERTY_MESSAGE, new PropertyChangeListener() { + @Override + public void propertyChange(PropertyChangeEvent evt) { + progressBar.setString((String) evt.getNewValue()); + } + }); + progressionModel.addPropertyChangeListener(ProgressionModel.PROPERTY_TOTAL, new PropertyChangeListener() { + @Override + public void propertyChange(PropertyChangeEvent evt) { + progressBar.setMinimum(0); + progressBar.setMaximum((Integer) evt.getNewValue()); + } + }); + progressionModel.addPropertyChangeListener(ProgressionModel.PROPERTY_CURRENT, new PropertyChangeListener() { + @Override + public void propertyChange(PropertyChangeEvent evt) { + progressBar.setValue((Integer) evt.getNewValue()); + + } + }); + dialog.add(progressBar); + dialog.setVisible(true); + } + return dialog; } } Modified: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeServiceImplUpTodateTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeServiceImplUpTodateTest.java 2013-02-14 15:27:16 UTC (rev 413) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeServiceImplUpTodateTest.java 2013-02-14 23:53:34 UTC (rev 414) @@ -37,6 +37,8 @@ import org.junit.rules.TestName; import org.springframework.jdbc.support.JdbcUtils; +import javax.swing.JDialog; +import java.awt.GraphicsEnvironment; import java.sql.Connection; import java.sql.SQLException; import java.util.Properties; @@ -67,6 +69,8 @@ protected ReferentialSynchronizeHelper helper; + protected JDialog dialog; + @Before public void setUp() throws Exception { @@ -89,6 +93,9 @@ @After public void tearDown() throws Exception { + if (dialog!=null) { + dialog.setVisible(false); + } service = null; remoteConnectionProperties = null; dialect = null; @@ -105,17 +112,53 @@ DatabaseSynchroFixtures fixturesRemote; DatabaseSynchroFixtures fixturesLocal; - ReferentialSynchronizeResult result; fixturesRemote = new DatabaseSynchroFixtures( helper, remoteSchema, remoteConnection); - result = service.synchronize(remoteConnectionProperties); + fixturesLocal = new DatabaseSynchroFixtures( + helper, remoteSchema, localConnection); - // same referentiel in both db + ReferentialSynchronizeResult result = new ReferentialSynchronizeResult(); + + dialog = ReferentialSynchronizeServiceImplTest.createProgressBar(result); + + service.prepare(remoteConnectionProperties, result); + Assert.assertNotNull(result); Assert.assertNull(result.getError()); + Assert.assertTrue(result.isSuccess()); + // on entities, only updates in table is with no update_date + for (TuttiTable tuttiTable : TuttiTable.getEntityTables()) { + String tableName = tuttiTable.name(); + int nbLocal = fixturesLocal.count(tuttiTable); + int nbRemote = fixturesRemote.count(tuttiTable); + int nbRows = result.getNbRows(tableName); + int expectedRows = 0; + TuttiTableMetadata table = remoteSchema.getTable(tableName); + if (!table.isWithUpdateDateColumn()) { + // updates everything + expectedRows = nbRemote; + } + + Assert.assertEquals(String.format("Table %s Should found %s rows, but was only %s", tableName, nbRemote, nbLocal), nbRemote, nbLocal, 0); + Assert.assertEquals(String.format("Table %s Should found %s rows to treat, but was only %s", tableName, expectedRows, nbRows), expectedRows, nbRows, 0); + } + + // on associations, only inserts + for (TuttiTable tuttiTable : TuttiTable.getAssociationTables()) { + String tableName = tuttiTable.name(); + int nbLocal = fixturesLocal.count(tuttiTable); + int nbRemote = fixturesRemote.count(tuttiTable); + int nbRows = result.getNbRows(tableName); + int expectedRows = nbRemote; + Assert.assertEquals(String.format("Table %s Should found %s rows, but was only %s", tableName, nbRemote, nbLocal), nbRemote, nbLocal, 0); + Assert.assertEquals(String.format("Table %s Should found %s rows to treat, but was only %s", tableName, expectedRows, nbRows), expectedRows, nbRows, 0); + } + + service.synchronize(remoteConnectionProperties, result); + fixturesLocal = new DatabaseSynchroFixtures( helper, remoteSchema, localConnection);

1 0

r413 - in trunk/tutti-persistence/src: main/java/fr/ifremer/tutti/persistence/service main/java/fr/ifremer/tutti/persistence/service/measure main/resources main/resources/i18n test/java/fr/ifremer/tutti/persistence/service
by blavenier＠users.forge.codelutin.com Feb. 14, 2013

Feb. 14, 2013

Author: blavenier Date: 2013-02-14 16:27:16 +0100 (Thu, 14 Feb 2013) New Revision: 413 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/413 Log: Fix : - saveBatchFrequencies now delete extra batch - store weights for 'inert' and 'livingNotSorted' Add : - ReferentialPersistenceService.getSampleCategoryIds() Improve : - Merge CatchBatchPersistenceService and SpeciesBatchPersistenceService into BatchPersistenceService - batch management now use adagio implementation CatchBatchExtendDao Added: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceService.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceImpl.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceReadTest.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceWriteTest.java Removed: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceImpl.java Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AbstractPersistenceService.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceService.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiEnumerationFile.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiPersistenceServiceLocator.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/measure/MeasurementPersistenceHelper.java trunk/tutti-persistence/src/main/resources/applicationContext-service-tutti.xml trunk/tutti-persistence/src/main/resources/i18n/tutti-persistence_fr_FR.properties trunk/tutti-persistence/src/main/resources/queries-override.hbm.xml trunk/tutti-persistence/src/main/resources/tutti-db-conf.properties trunk/tutti-persistence/src/main/resources/tutti-db-enumerations.properties Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AbstractPersistenceService.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AbstractPersistenceService.java 2013-02-14 10:40:25 UTC (rev 412) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AbstractPersistenceService.java 2013-02-14 15:27:16 UTC (rev 413) @@ -38,6 +38,7 @@ import java.io.Serializable; import java.util.Iterator; +import java.util.List; /** * TODO @@ -123,6 +124,13 @@ return result; } + protected <T> List<T> queryList2Typed(String queryName, Object... params) { + + Query query = createQuery(queryName, params); + List result = query.list(); + return result; + } + protected Query createQuery(String queryName, Object... params) { Query query = getCurrentSession().getNamedQuery(queryName); Added: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceService.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceService.java (rev 0) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceService.java 2013-02-14 15:27:16 UTC (rev 413) @@ -0,0 +1,8 @@ +package fr.ifremer.tutti.persistence.service; + +import org.springframework.transaction.annotation.Transactional; + +@Transactional(readOnly = true) +public interface BatchPersistenceService extends CatchBatchPersistenceService, SpeciesBatchPersistenceService{ + +} Added: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceImpl.java (rev 0) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceImpl.java 2013-02-14 15:27:16 UTC (rev 413) @@ -0,0 +1,1297 @@ +package fr.ifremer.tutti.persistence.service; + +import static org.nuiton.i18n.I18n._; + +import java.io.Serializable; +import java.text.MessageFormat; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collection; +import java.util.HashMap; +import java.util.HashSet; +import java.util.Iterator; +import java.util.List; +import java.util.Map; +import java.util.Set; + +import javax.annotation.Resource; + +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.hibernate.FlushMode; +import org.hibernate.type.IntegerType; +import org.springframework.cache.annotation.CacheEvict; +import org.springframework.dao.DataIntegrityViolationException; +import org.springframework.dao.DataRetrievalFailureException; +import org.springframework.stereotype.Service; + +import com.google.common.base.Preconditions; +import com.google.common.collect.Lists; + +import fr.ifremer.adagio.core.dao.data.batch.Batch; +import fr.ifremer.adagio.core.dao.data.batch.CatchBatchExtendDao; +import fr.ifremer.adagio.core.dao.data.batch.SortingBatch; +import fr.ifremer.adagio.core.dao.data.batch.SortingBatchDao; +import fr.ifremer.adagio.core.dao.data.batch.denormalized.DenormalizedBatchDao; +import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidationError; +import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidationException; +import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidator; +import fr.ifremer.adagio.core.dao.data.measure.QuantificationMeasurement; +import fr.ifremer.adagio.core.dao.data.measure.SortingMeasurement; +import fr.ifremer.adagio.core.dao.data.operation.FishingOperationImpl; +import fr.ifremer.adagio.core.dao.referential.QualityFlagImpl; +import fr.ifremer.adagio.core.dao.referential.taxon.ReferenceTaxon; +import fr.ifremer.adagio.core.dao.referential.taxon.ReferenceTaxonImpl; +import fr.ifremer.adagio.core.dao.technical.synchronization.SynchronizationStatus; +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import fr.ifremer.tutti.persistence.entities.data.SampleCategoryEnum; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicType; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.persistence.service.measure.MeasurementPersistenceHelper; + +@Service("batchPersistenceService") +public class BatchPersistenceServiceImpl + extends AbstractPersistenceService implements BatchPersistenceService, CatchBatchValidator + { + + /** Logger. */ + private static final Log log = + LogFactory.getLog(BatchPersistenceServiceImpl.class); + + @Resource(name = "referentialPersistenceService") + protected ReferentialPersistenceService referentialService; + + @Resource(name = "denormalizedBatchDao") + protected DenormalizedBatchDao denormalizedBatchDao; + + @Resource(name = "sortingBatchDao") + protected SortingBatchDao sortingBatchDao; + + @Resource(name = "catchBatchDao") + protected CatchBatchExtendDao catchBatchDao; + + @Resource(name = "measurementPersistenceHelper") + protected MeasurementPersistenceHelper measurementHelper; + + @Override + public void init() { + super.init(); + catchBatchDao.registerCatchBatchValidator(this); + } + + @Override + public void close() { + catchBatchDao.unregisterCatchBatchValidator(this); + super.close(); + } + + @Override + public boolean isEnable(fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch) { + // Apply validation only on catch batch for fishingOperation + return (catchBatch.getFishingOperation() != null); + } + + @Override + public List<CatchBatchValidationError> validate(fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch) { + List<CatchBatchValidationError> errors = Lists.newArrayList(); + validate(catchBatch.getChildBatchs(), errors, 1); + return errors; + } + + @Override + public CatchBatch getCatchBatchFromFishingOperation(String fishingOperationId) { + Preconditions.checkNotNull(fishingOperationId); + + Integer catchBatchId = catchBatchDao.getIdByFishingOperationId(Integer.valueOf(fishingOperationId)); + + fr.ifremer.adagio.core.dao.data.batch.CatchBatch source; + try { + source = catchBatchDao.loadFullTree(catchBatchId, true, true); + } catch (CatchBatchValidationException e) { + throw new DataRetrievalFailureException("Invalid batch tree structure, for fishing operation id=" + fishingOperationId, e); + } + + CatchBatch result = new CatchBatch(); + result.setId(source.getId().toString()); + result.setCatchTotalWeight(source.getWeight()); + + // Vrac + SortingBatch vracBatch = catchBatchDao.getSortingBatch(source.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID); + result.setCatchTotalSortedCarousselWeight(vracBatch.getWeight()); + result.setCatchTotalSortedTremisWeight(vracBatch.getWeightBeforeSampling()); + { + // Species + SortingBatch speciesBatch = catchBatchDao.getSortingBatch(vracBatch.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + + result.setSpeciesTotalSampleSortedWeight(speciesBatch.getWeight()); + result.setSpeciesTotalSortedWeight(speciesBatch.getWeightBeforeSampling()); + + { + // Inert + SortingBatch inertBatch = catchBatchDao.getSortingBatch(speciesBatch.getChildBatchs(), + "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_INERT); + result.setSpeciesTotalInertWeight(inertBatch.getWeight()); + + // Alive no itemized + SortingBatch livingNotItemizedBatch = catchBatchDao.getSortingBatch(speciesBatch.getChildBatchs(), + "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_LIFE); + result.setSpeciesTotalLivingNotItemizedWeight(livingNotItemizedBatch.getWeight()); + } + + // TODO : Benthos, Plancton... + } + + // Hors Vrac + SortingBatch horsVracBatch = catchBatchDao.getSortingBatch(source.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID); + result.setCatchTotalUnsortedWeight(horsVracBatch.getWeight()); + { + // Species + SortingBatch speciesBatch = catchBatchDao.getSortingBatch(horsVracBatch.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + + result.setSpeciesTotalUnsortedWeight(speciesBatch.getWeight()); + + // TODO : Benthos, Plancton... + } + + // Non trié + SortingBatch unsortedBatch = catchBatchDao.getSortingBatch(source.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_UNSORTED_ID); + result.setCatchTotalRejectedWeight(unsortedBatch.getWeight()); + + return result; + } + + @Override + + public CatchBatch createCatchBatch(CatchBatch bean) { + Preconditions.checkNotNull(bean); + Preconditions.checkArgument(bean.getId() == null); + Preconditions.checkNotNull(bean.getFishingOperation()); + Preconditions.checkNotNull(bean.getFishingOperation().getId()); + + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = fr.ifremer.adagio.core.dao.data.batch.CatchBatch.Factory.newInstance(); + beanToEntity(bean, catchBatch, true); + catchBatch = catchBatchDao.create(catchBatch); + bean.setId(String.valueOf(catchBatch.getId())); + + // Link to fishing operation + getCurrentSession().flush(); + Integer fishingOperationId = Integer.valueOf(bean.getFishingOperation().getId()); + int rowUpdated = queryUpdate("updateFishingOperationCatchBatch", + "fishingOperationId", IntegerType.INSTANCE, fishingOperationId, + "catchBatchId", IntegerType.INSTANCE, catchBatch.getId()); + if (rowUpdated == 0) { + throw new DataIntegrityViolationException("Could not attach catch batch to the given operation : operation was not found."); + } + + return bean; + } + + @Override + @CacheEvict(value = "batchTree", key="#bean.fishingOperation.id") + public CatchBatch saveCatchBatch(CatchBatch bean) { + + Preconditions.checkNotNull(bean); + Preconditions.checkNotNull(bean.getId()); + + getCurrentSession().enableFetchProfile("batch-with-childs"); + getCurrentSession().setFlushMode(FlushMode.COMMIT); + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.load(Integer.valueOf(bean.getId())); + if (catchBatch == null) { + throw new DataRetrievalFailureException("Could not retrieve catch batch with id=" + bean.getId()); + } + + beanToEntity(bean, catchBatch, true); + catchBatchDao.update(catchBatch); + getCurrentSession().flush(); + + return bean; + } + + @Override + public List<SpeciesBatch> getAllRootSpeciesBatch(String fishingOperationId) { + + // Load batch tree + Integer catchBatchId = catchBatchDao.getIdByFishingOperationId(Integer.valueOf(fishingOperationId)); + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); + + List<SpeciesBatch> result = new ArrayList<SpeciesBatch>(); + + // Vrac / Species + SortingBatch vracSpeciesBatch = catchBatchDao.getSortingBatch(catchBatch.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, + "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + for (Iterator<Batch> iterator = vracSpeciesBatch.getChildBatchs().iterator(); iterator.hasNext();) { + SortingBatch source = (SortingBatch) iterator.next(); + + // evict some special batches : Life (or Biota) and Inert + if (source.getReferenceTaxon() != null + && enumeration.REFERENCE_TAXON_ID_LIFE.equals(source.getReferenceTaxon().getId()) == false + && enumeration.REFERENCE_TAXON_ID_INERT.equals(source.getReferenceTaxon().getId()) == false) { + SpeciesBatch target = new SpeciesBatch(); + + entityToBean(source, target); + result.add(target); + } + } + + // Hors-Vrac / Species + SortingBatch horsVracSpeciesBatch = catchBatchDao.getSortingBatch(catchBatch.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, + "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + for (Iterator<Batch> iterator = horsVracSpeciesBatch.getChildBatchs().iterator(); iterator.hasNext();) { + SortingBatch source = (SortingBatch) iterator.next(); + + SpeciesBatch target = new SpeciesBatch(); + + entityToBean(source, target); + result.add(target); + } + + return result; + } + + protected SpeciesBatch entityToBean(SortingBatch source, SpeciesBatch target) { + + target.setId(source.getId().toString()); + + // Individual count + target.setNumber(source.getIndividualCount()); + + // Convert database weight (and sampling ratio) into UI weight and sampleCategoryWeight + if (source.getWeight() != null && source.getWeightBeforeSampling() == null) { + target.setSampleCategoryWeight(source.getWeight()); + } + else { + target.setWeight(source.getWeight()); + target.setSampleCategoryWeight(source.getWeightBeforeSampling()); + } + + // Comments + target.setComment(source.getComments()); + + // Sample category type (only one is applied) + SortingMeasurement sm = null; + if (source.getSortingMeasurements().size() == 1) { + sm = source.getSortingMeasurements().iterator().next(); + } + else if (source.getReferenceTaxon() != null && source.getReferenceTaxon().getId() != null){ + sm = measurementHelper.getInheritedSortingMeasurement(source, enumeration.PMFM_ID_SORTED_UNSORTED); + } + if (sm != null) { + SampleCategoryEnum sampleCategory = referentialService.getSampleCategoryByPmfmId(sm.getPmfm().getId()); + if (sampleCategory != null) { + setSampleCategoryQualitative(target, sm.getPmfm().getId(), sm.getNumericalValue(), sm.getAlphanumericalValue(), sm.getQualitativeValue().getId()); + } + } + + // Species + Integer referenceTaxonId = source.getInheritedReferenceTaxonId(); + if (referenceTaxonId == null && source.getReferenceTaxon() != null) { + referenceTaxonId = source.getReferenceTaxon().getId(); + } + if (referenceTaxonId != null) { + // TODO : add cache on getSpeciesByReferenceTaxonId + Species species = referentialService.getSpeciesByReferenceTaxonId(referenceTaxonId); + target.setSpecies(species); + } + + if (target.getSampleCategoryType() != null && source.getChildBatchs().size() > 0) { + List<SpeciesBatch> targetChilds = Lists.newArrayList(); + for (Iterator<Batch> iterator = source.getChildBatchs().iterator(); iterator.hasNext();) { + SortingBatch sourceChild = (SortingBatch) iterator.next(); + SpeciesBatch targetChild = new SpeciesBatch(); + entityToBean(sourceChild, targetChild); + if (targetChild.getSampleCategoryValue() != null) { + targetChilds.add(targetChild); + targetChild.setParentBatch(target); + } + } + target.setChildBatchs(targetChilds); + } + + return target; + } + + @Override + public SpeciesBatch createSpeciesBatch(SpeciesBatch bean, + String parentBatchId) { + Preconditions.checkNotNull(bean); + Preconditions.checkArgument(bean.getId() == null); + Preconditions.checkNotNull(bean.getSpecies()); + Preconditions.checkNotNull(bean.getSpecies().getId()); + Preconditions.checkNotNull(bean.getFishingOperation()); + Preconditions.checkNotNull(bean.getFishingOperation().getId()); + + getCurrentSession().setFlushMode(FlushMode.COMMIT); + + // Load full batch tree + Integer catchBatchId = catchBatchDao.getIdByFishingOperationId(Integer.valueOf(bean.getFishingOperation().getId())); + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); + + SortingBatch batch = SortingBatch.Factory.newInstance(); + beanToEntity(bean, batch, parentBatchId, catchBatch, true); + batch = sortingBatchDao.create(batch); + + bean.setId(String.valueOf(batch.getId())); + + getCurrentSession().flush(); + + return bean; + } + + @Override + public SpeciesBatch saveSpeciesBatch(SpeciesBatch bean) { + Preconditions.checkNotNull(bean); + Preconditions.checkNotNull(bean.getId()); + + // Load full batch tree + Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(Integer.valueOf(bean.getId())); + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); + + getCurrentSession().setFlushMode(FlushMode.COMMIT); + + SortingBatch batch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(bean.getId())); + String parentBatchId = null; + if (bean.getParentBatch() != null) { + parentBatchId = bean.getParentBatch().getId(); + } + beanToEntity(bean, batch, parentBatchId, catchBatch, true); + sortingBatchDao.update(batch); + getCurrentSession().flush(); + + return bean; + } + + @Override + public void deleteSpeciesBatch(String id) { + Preconditions.checkNotNull(id); + + getCurrentSession().setFlushMode(FlushMode.COMMIT); + + catchBatchDao.removeWithChildren(Integer.valueOf(id)); + + getCurrentSession().flush(); + } + + public void deleteSpeciesSubBatch(String id) { + deleteSpeciesBatch(id); + } + + public void changeSpeciesBatchSpecies(String batchId, Species species) { + Preconditions.checkNotNull(batchId); + Preconditions.checkNotNull(species); + Preconditions.checkNotNull(species.getReferenceTaxonId()); + + if (log.isDebugEnabled()) { + log.debug("Changing species for batch id=" + batchId); + } + + int rowUpdated = queryUpdate("updateBatchSpecies", + "batchId", IntegerType.INSTANCE, Integer.valueOf(batchId), + "referenceTaxonId", IntegerType.INSTANCE, species.getReferenceTaxonId()); + Preconditions.checkArgument(rowUpdated == 1, "Unable to update operation, to be linked with catch batch."); + } + + public List<SpeciesBatchFrequency> getAllSpeciesBatchFrequency( + String speciesBatchId) { + List<SpeciesBatchFrequency> results = Lists.newArrayList(); + + Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(Integer.valueOf(speciesBatchId)); + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); + + if (catchBatchId == null) { + return results; + } + + SortingBatch sortingBatch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(speciesBatchId)); + + for (Iterator<Batch> iterator = sortingBatch.getChildBatchs().iterator(); iterator.hasNext();) { + SortingBatch source = (SortingBatch) iterator.next(); + SpeciesBatchFrequency target = new SpeciesBatchFrequency(); + + entityToBean(source, target); + results.add(target); + } + return results; + } + + protected void entityToBean(SortingBatch source, SpeciesBatchFrequency target) { + + target.setId(source.getId().toString()); + + target.setNumber(source.getIndividualCount()); + target.setWeight(source.getWeight()); + target.setComment(source.getComments()); + + // Length step category + if (source.getSortingMeasurements().size() == 1) { + SortingMeasurement sm = source.getSortingMeasurements().iterator().next(); + if (sm.getPmfm() != null && sm.getPmfm().getId() != null) { + Caracteristic lengthStepCaracteristic = referentialService.getCaracteristic(sm.getPmfm().getId()); + target.setLengthStepCaracteristic(lengthStepCaracteristic); + } + + // Length + target.setLengthStep(sm.getNumericalValue()); + } + } + + public List<SpeciesBatchFrequency> saveSpeciesBatchFrequency( + String speciesBatchId, List<SpeciesBatchFrequency> frequencies) { + Preconditions.checkNotNull(speciesBatchId); + Preconditions.checkNotNull(frequencies); + + if (frequencies.size() == 0) { + return frequencies; + } + getCurrentSession().setFlushMode(FlushMode.COMMIT); + + Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(Integer.valueOf(speciesBatchId)); + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); + + if (catchBatch == null) { + return frequencies; + } + + // Retrieve parent + SortingBatch parentBatch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(speciesBatchId)); + + // Remember child ids, to remove unchanged item (see at bottom in this method) + List<Integer> notUpdatedChildIds = Lists.newArrayList(); + for (Iterator<Batch> iterator = parentBatch.getChildBatchs().iterator(); iterator.hasNext();) { + SortingBatch sortingBatch = (SortingBatch) iterator.next(); + notUpdatedChildIds.add(sortingBatch.getId()); + } + + short rankOrder = 0; + String pmfmId = null; + List<SortingBatch> batchsToUpdate = Lists.newArrayList(); + for (SpeciesBatchFrequency source : frequencies) { + rankOrder++; + + // Check that all frequencies have the same length PMFM + if (pmfmId == null) { + source.getLengthStepCaracteristic().getId(); + } else if (!pmfmId.equals(source.getLengthStepCaracteristic().getId())) { + throw new DataIntegrityViolationException("Batch frequencies under one Speciesbatch must have all the same lengthStepCaracteristic"); + } + + // Not existing batch + SortingBatch target = null; + if (source.getId() == null) { + target = SortingBatch.Factory.newInstance(); + + // Fill the sorting batch from the source + beanToEntity(source, target, parentBatch, rankOrder, true); + + // Create the targeted batch, then update the source id + sortingBatchDao.create(target); + source.setId(target.getId().toString()); + } + + // Existing batch + else { + target = sortingBatchDao.load(Integer.valueOf(source.getId())); + + // Fill the sorting batch from the source + beanToEntity(source, target, parentBatch, rankOrder, true); + + // Add the batch into a list (will be update later, using this list) + batchsToUpdate.add(target); + + notUpdatedChildIds.remove(target.getId()); + } + } + + // If some batchs need to be update, do it + if (batchsToUpdate.size() > 0) { + sortingBatchDao.update(batchsToUpdate); + } + + if (notUpdatedChildIds.size() > 0) { + for (Iterator<Integer> iterator = notUpdatedChildIds.iterator(); iterator.hasNext();) { + Integer batchId = iterator.next(); + catchBatchDao.removeWithChildren(batchId); + } + } + + getCurrentSession().flush(); + + return frequencies; + } + + // ------------------------------------------------------------------------// + // -- Internal methods --// + // ------------------------------------------------------------------------// + + protected void validate(Collection<Batch> batchs, List<CatchBatchValidationError> errors, int treeLevel) { + + List<Integer> expectedPmfms = null; + boolean expectedReferenceTaxon = false; + // First tree level : should have pmfm SORTED (Vrac, Hors Vrac, Non trié) + if (treeLevel == 1) { + expectedPmfms = Lists.newArrayList(enumeration.PMFM_ID_SORTED_UNSORTED); + } + // Second tree level : should have pmfm SORTING_TYPE (Species, Benthos...) + else if (treeLevel == 2) { + expectedPmfms = Lists.newArrayList(enumeration.PMFM_ID_SORTING_TYPE); + } + else if (treeLevel == 3) { + expectedReferenceTaxon = true; + } + else if (treeLevel > 3) { + expectedPmfms = referentialService.getSampleCategoryIds(); + expectedPmfms.remove(enumeration.PMFM_ID_SORTED_UNSORTED); + } + + // First level : should be only PMFM=SORTED + for (Iterator<Batch> iterator = batchs.iterator(); iterator.hasNext();) { + SortingBatch batch = (SortingBatch) iterator.next(); + boolean batchHasError = false; + + // For all sorting measurements + if (batch.getSortingMeasurements() != null && batch.getSortingMeasurements().size() > 0) { + for (Iterator<SortingMeasurement> iterator2 = batch.getSortingMeasurements().iterator(); iterator2.hasNext();) { + SortingMeasurement sm = iterator2.next(); + Integer pmfmId = sm.getPmfm().getId(); + if (expectedReferenceTaxon) { + CatchBatchValidationError error = new CatchBatchValidationError( + "tutti.persistence.batch.validation.onlyTaxonButPmfmFound", + _("tutti.persistence.batch.validation.onlyTaxonButPmfmFound", batch.getId(), pmfmId), + CatchBatchValidationError.GRAVITY_ERROR); + errors.add(error); + } + else if (expectedPmfms.contains(pmfmId) == false) { + if (sm.getNumericalValue() == null || batch.getChildBatchs().size() > 0) { + batchHasError = true; + CatchBatchValidationError error = new CatchBatchValidationError( + "tutti.persistence.batch.validation.pmfmNotFound", + _("tutti.persistence.batch.validation.pmfmNotFound", + batch.getId(), Arrays.toString(expectedPmfms.toArray()), pmfmId), + CatchBatchValidationError.GRAVITY_ERROR); + errors.add(error); + } + } + } + } + else if (expectedPmfms != null && expectedPmfms.size() > 0){ + batchHasError = true; + CatchBatchValidationError error = new CatchBatchValidationError( + "tutti.persistence.batch.validation.pmfmNotFound", + _("tutti.persistence.batch.validation.pmfmNotFound", + batch.getId(), Arrays.toString(expectedPmfms.toArray()), "null"), + CatchBatchValidationError.GRAVITY_ERROR); + errors.add(error); + } + + if (!batchHasError && expectedReferenceTaxon == true && batch.getReferenceTaxon() == null) { + CatchBatchValidationError error = new CatchBatchValidationError( + "tutti.persistence.batch.validation.referenceTaxonNotFound", + _("tutti.persistence.batch.validation.referenceTaxonNotFound", batch.getId()), + CatchBatchValidationError.GRAVITY_ERROR); + errors.add(error); + } + + if (!batchHasError) { + validate(batch.getChildBatchs(), errors, treeLevel+1); + } + } + } + + protected void beanToEntity(SpeciesBatch source, + SortingBatch target, + String parentBatchId, + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch, + boolean copyIfNull) { + Preconditions.checkNotNull(source.getFishingOperation()); + Preconditions.checkNotNull(source.getFishingOperation().getId()); + + // Retrieve recorder department + Integer recorderDepartmentId = getRecorderDepartmentId(); + + // Create lists to store all updates, then remove not updated items + Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); + if (target.getQuantificationMeasurements() != null) { + notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); + } + Set<SortingMeasurement> notChangedSortingMeasurements = new HashSet<SortingMeasurement>(); + if (target.getSortingMeasurements() != null) { + notChangedSortingMeasurements.addAll(target.getSortingMeasurements()); + } + + // If parent and root need to be set + if (target.getId() == null + || target.getRootBatch() == null + || (target.getParentBatch() != null && !target.getParentBatch().getId().toString().equals(parentBatchId))) { + setBatchParents(source, target, parentBatchId, catchBatch); + } + + // RankOrder (initialize once, at creation) + if (target.getRankOrder() == null) { + // Start rank order at 3, because of special batches 'Biota' and 'Inert' + short rankOrder = (short) 3; + if (source.getParentBatch() != null && source.getParentBatch().getChildBatchs() != null) { + // TODO BL : vérifier cela (est-ce que l'item est ajouté à son père AVANT d'être passé au service ?) + rankOrder += (short) source.getParentBatch().getChildBatchs().size(); + } + target.setRankOrder(rankOrder); + } + + // Force subgroup count to '1', as Allegro + target.setSubgroupCount(1f); + + // Weight or SampleCategoryWeight + if (copyIfNull && source.getWeight() == null && source.getSampleCategoryWeight() == null) { + // Nothing to do : will be removed later, using notChangedSortingMeasurements + } else if (source.getSampleCategoryWeight() != null && source.getWeight() == null) { + QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getSampleCategoryWeight(), true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } else if (source.getWeight() != null && source.getSampleCategoryWeight() == null) { + QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getWeight(), true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } + + // Sampling Ratio + if (copyIfNull && (source.getSampleCategoryWeight() == null || source.getWeight() == null)) { + target.setSamplingRatio(null); + target.setSamplingRatioText(null); + } else if (source.getSampleCategoryWeight() != null && source.getWeight() != null) { + String samplingRatioText = source.getWeight() + "/" + source.getSampleCategoryWeight(); + samplingRatioText = samplingRatioText.replaceAll(",", "."); + target.setSamplingRatioText(samplingRatioText); + target.setSamplingRatio(source.getWeight() / source.getSampleCategoryWeight()); + QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getWeight(), true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } + + // Sorting measurement + if (copyIfNull && (source.getSampleCategoryType() == null || source.getSampleCategoryValue() == null)) { + // Nothing to do : will be removed later, using notChangedSortingMeasurements + } else if (source.getSampleCategoryType() != null && source.getSampleCategoryValue() != null) { + Integer pmfmId = measurementHelper.sampleCategory2PmfmId(source.getSampleCategoryType()); + // Do not store sorting measurement if pmfm = SORTED (already store in an ancestor batch) + if (!pmfmId.equals(enumeration.PMFM_ID_SORTED_UNSORTED)) { + SortingMeasurement sortingMeasurement = measurementHelper.setSortingMeasurement(target, recorderDepartmentId, + source.getSampleCategoryType(), source.getSampleCategoryValue()); + notChangedSortingMeasurements.remove(sortingMeasurement); + } + } + + // Individual count + if (copyIfNull && source.getNumber() == null) { + target.setIndividualCount(null); + } else if (source.getNumber() != null) { + target.setIndividualCount(source.getNumber()); + } + + // Species + if (copyIfNull && (source.getSpecies() == null || parentBatchId != null)) { + target.setReferenceTaxon(null); + } else if (source.getSpecies() != null && parentBatchId == null) { + ReferenceTaxon referenceTaxon = load(ReferenceTaxonImpl.class, source.getSpecies().getReferenceTaxonId()); + target.setReferenceTaxon(referenceTaxon); + } + + // QualityFlag + if (source.isSpeciesToConfirm()) { + target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_DOUBTFUL)); + } else { + target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); + } + + // Comments + if (copyIfNull && source.getComment() == null) { + target.setComments(null); + } else if (source.getComment() != null) { + target.setComments(source.getComment()); + } + + // Exhaustive inventory (always true under a species batch) + target.setExhaustiveInventory(true); + + // Removed not changed measurements (in sorting and quantification measurement lists) + if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { + for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { + target.getQuantificationMeasurements().remove(qm); + } + } + if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { + for (SortingMeasurement sm : notChangedSortingMeasurements) { + target.getSortingMeasurements().remove(sm); + } + } + } + + public void setBatchParents(SpeciesBatch source, SortingBatch target, String parentBatchIdStr, + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch) { + + Preconditions.checkNotNull(target); + Preconditions.checkNotNull(source.getFishingOperation()); + Preconditions.checkNotNull(source.getFishingOperation().getId()); + + // Load existing parent and root + SortingBatch parentBatch = null; + if (parentBatchIdStr != null) { + parentBatch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(parentBatchIdStr)); + } + + // Or retrieve parent batch, from pmfm id + else { + // Retrieve category type + Integer pmfmId = measurementHelper.sampleCategory2PmfmId(source.getSampleCategoryType()); + if (pmfmId == null || !pmfmId.equals(enumeration.PMFM_ID_SORTED_UNSORTED)) { + throw new DataIntegrityViolationException(MessageFormat.format( + "A species batch with no parent should have a sampleCategoryType {0} (PMFM.ID={1})", + SampleCategoryEnum.sortedUnsorted.name(), + enumeration.PMFM_ID_SORTED_UNSORTED)); + } + Integer qualitativeValueId = convertSampleCategoryValueIntoQualitativeId(source.getSampleCategoryValue()); + + parentBatch = catchBatchDao.getSortingBatch(catchBatch.getChildBatchs(), + "pmfmId", pmfmId, qualitativeValueId, + "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + + // Parent Batch + target.setParentBatch(parentBatch); + } + + + if (parentBatch == null) { + throw new DataIntegrityViolationException( + "Could not retrieve parent batch, for a given speciesBatch : invalid batch tree structure. Please make sure CatchBatch has been saved before to create a SpeciesBatch."); + } + + // Parent Batch + target.setParentBatch(parentBatch); + target.setRootBatch(catchBatch); + } + + Integer convertSampleCategoryValueIntoQualitativeId(Serializable value) { + if (value == null) + return null; + Integer qualitativeValueId = null; + if (value instanceof CaracteristicQualitativeValue) { + CaracteristicQualitativeValue cqValue = (CaracteristicQualitativeValue) value; + qualitativeValueId = Integer.valueOf(cqValue.getId()); + } else if (value instanceof String) { + qualitativeValueId = Integer.valueOf((String) value); + } + return qualitativeValueId; + } + + protected void setSampleCategoryQualitative(SpeciesBatch target, Integer pmfmId, Float numericalvalue, String alphanumericalValue, + Integer qualitativeValueId) { + // skip if null or corresponding to the SORTING_TYPE PMFM (Expèce, Benthos, Plancton, etc.) + if (pmfmId == null || pmfmId.equals(enumeration.PMFM_ID_SORTING_TYPE)) { + return; + } + + SampleCategoryEnum sampleCategory = referentialService.getSampleCategoryByPmfmId(pmfmId); + Preconditions.checkNotNull(sampleCategory, "Unable to find corresponding SampleCategoryEnum for PMFM.ID : " + pmfmId); + + target.setSampleCategoryType(sampleCategory); + if (numericalvalue != null) { + target.setSampleCategoryValue(numericalvalue); + return; + } + if (alphanumericalValue != null) { + target.setSampleCategoryValue(alphanumericalValue); + return; + } + + Caracteristic caracteristic = referentialService.getCaracteristic(pmfmId); + if (caracteristic == null || caracteristic.getCaracteristicType() != CaracteristicType.QUALITATIVE) { + return; + } + CaracteristicQualitativeValue value = null; + for (CaracteristicQualitativeValue qv : caracteristic.getQualitativeValue()) { + if (qualitativeValueId == Integer.parseInt(qv.getId())) { + value = qv; + break; + } + } + target.setSampleCategoryValue(value); + } + + protected void beanToEntity(SpeciesBatchFrequency source, SortingBatch target, SortingBatch parentBatch, short rankOrder, boolean copyIfNull) { + Preconditions.checkNotNull(source.getBatch()); + Preconditions.checkNotNull(source.getBatch().getId()); + + // Retrieve recorder department + Integer recorderDepartmentId = getRecorderDepartmentId(); + + // Create lists to store all updates, then remove not updated items + Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); + if (target.getQuantificationMeasurements() != null) { + notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); + } + Set<SortingMeasurement> notChangedSortingMeasurements = new HashSet<SortingMeasurement>(); + if (target.getSortingMeasurements() != null) { + notChangedSortingMeasurements.addAll(target.getSortingMeasurements()); + } + + // If parent and root need to be set + if (target.getId() == null + || target.getRootBatch() == null + || (target.getParentBatch() != null && !target.getParentBatch().getId().equals(parentBatch.getId()))) { + + target.setParentBatch(parentBatch); + target.setRootBatch(parentBatch.getRootBatch()); + } + + // RankOrder + target.setRankOrder(rankOrder); + + // Weight or SampleCategoryWeight + if (copyIfNull && source.getWeight() == null) { + // Nothing to do : will be removed later, using notChangedSortingMeasurements + } else if (source.getWeight() != null) { + QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getWeight(), true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } + + // Sorting measurement + if (copyIfNull && (source.getLengthStepCaracteristic() == null || source.getLengthStep() == null)) { + // Nothing to do : will be removed later, using notChangedSortingMeasurements + } else if (source.getLengthStepCaracteristic() != null && source.getLengthStep() != null) { + Integer pmfmId = Integer.valueOf(source.getLengthStepCaracteristic().getId()); + SortingMeasurement sortingMeasurement = measurementHelper.setSortingMeasurement(target, recorderDepartmentId, pmfmId, + source.getLengthStep()); + notChangedSortingMeasurements.remove(sortingMeasurement); + } + + // Individual count + if (copyIfNull && source.getNumber() == null) { + target.setIndividualCount(null); + } else if (source.getNumber() != null) { + target.setIndividualCount(source.getNumber()); + } + + // Species + target.setReferenceTaxon(null); + + // QualityFlag + target.setQualityFlag(parentBatch.getQualityFlag()); + + // Comments + if (copyIfNull && source.getComment() == null) { + target.setComments(null); + } else if (source.getComment() != null) { + target.setComments(source.getComment()); + } + + // Exhaustive inventory (always true under a species batch) + target.setExhaustiveInventory(true); + + // Removed not changed measurements (in sorting and quantification measurement lists) + if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { + for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { + target.getQuantificationMeasurements().remove(qm); + } + } + if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { + for (SortingMeasurement sm : notChangedSortingMeasurements) { + target.getSortingMeasurements().remove(sm); + } + } + } + + protected UIWeight convertDatabase2UI(Float weight, Float samplingRatio, String samplingRatioText) { + UIWeight result = new UIWeight(); + + // Weight & sampleCategory Weight + if (samplingRatio == null) { + result.sampleCategoryWeight = weight; + } else if (weight != null) { + String startStr = weight.toString().replace(',', '.') + "/"; + if (samplingRatioText != null && samplingRatioText.startsWith(startStr)) { + String weightStr = samplingRatioText.substring(startStr.length()); + if (weightStr != null && !weightStr.isEmpty()) { + result.sampleCategoryWeight = Float.parseFloat(weightStr); + result.weight = weight; + } + } else { + result.sampleCategoryWeight = weight; + } + } + return result; + } + + static class UIWeight { + Float sampleCategoryWeight = null; + + Float weight = null; + } + + protected void beanToEntity(CatchBatch source, + fr.ifremer.adagio.core.dao.data.batch.CatchBatch target, + boolean copyIfNull) { + Preconditions.checkNotNull(source.getFishingOperation()); + Preconditions.checkNotNull(source.getFishingOperation().getId()); + + // Retrieve recorder department + Integer recorderDepartmentId = getRecorderDepartmentId(); + + // First initialization (when created) + Integer fishingOperationId = Integer.valueOf(source.getFishingOperation().getId()); + target.setFishingOperation(load(FishingOperationImpl.class, fishingOperationId)); + + target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); + target.setRankOrder((short) 1); + target.setSynchronizationStatus(SynchronizationStatus.DIRTY.getValue()); + + // Create lists to store all updates, then remove not updated items + Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); + if (target.getQuantificationMeasurements() != null) { + notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); + } + + // Total Weight + if (copyIfNull && source.getCatchTotalWeight() == null) { + // Nothing to do : will be removed later, using notChangedQuantificationMeasurements + } else if (source.getCatchTotalWeight() != null) { + QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getCatchTotalWeight(), true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } + + // Removed not changed measurements (in sorting and quantification measurement lists) + if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { + for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { + target.getQuantificationMeasurements().remove(qm); + } + } + Map<Integer, SortingBatch> catchBatchChilds = getChildsMap(target, enumeration.PMFM_ID_SORTED_UNSORTED); + + // ----------------------------------------------------------------------------- + // Sorted Vrac + // ----------------------------------------------------------------------------- + { + SortingBatch batch = catchBatchChilds.get(enumeration.QUALITATIVE_VRAC_ID); + if (batch == null) { + batch = SortingBatch.Factory.newInstance(); + target.getChildBatchs().add(batch); + } + beanToEntitySortingBatch(target, target, batch, recorderDepartmentId, + enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, + source.getCatchTotalSortedCarousselWeight(), source.getCatchTotalSortedTremisWeight(), + copyIfNull); + batch.setRankOrder((short) 1); + + // Manage childs : + { + Map<Integer, SortingBatch> batchChilds = getChildsMap(batch, enumeration.PMFM_ID_SORTING_TYPE); + + // ----------------------------------------------------------------------------- + // Sorted Vrac / Species + // ----------------------------------------------------------------------------- + SortingBatch speciesBatch = batchChilds.get(enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + if (speciesBatch == null) { + speciesBatch = SortingBatch.Factory.newInstance(); + if (batch.getChildBatchs() == null) { + batch.setChildBatchs(Lists.newArrayList((Batch) speciesBatch)); + } else { + batch.getChildBatchs().add(speciesBatch); + } + } + beanToEntitySortingBatch(target, batch, speciesBatch, recorderDepartmentId, + enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, + source.getSpeciesTotalSampleSortedWeight(), source.getSpeciesTotalSortedWeight(), + copyIfNull); + speciesBatch.setRankOrder((short) 1); + + { + + // ----------------------------------------------------------------------------- + // Sorted Vrac / Species / Alive not itemized + // ----------------------------------------------------------------------------- + SortingBatch aliveNotItemizedBatch = catchBatchDao.getSortingBatch(speciesBatch.getChildBatchs(), "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_LIFE); + if (aliveNotItemizedBatch == null) { + aliveNotItemizedBatch = SortingBatch.Factory.newInstance(); + if (speciesBatch.getChildBatchs() == null) { + speciesBatch.setChildBatchs(Lists.newArrayList((Batch) aliveNotItemizedBatch)); + } else { + speciesBatch.getChildBatchs().add(aliveNotItemizedBatch); + } + } + beanToEntityReferenceTaxonBatch(target, speciesBatch, aliveNotItemizedBatch, recorderDepartmentId, + enumeration.REFERENCE_TAXON_ID_LIFE, + source.getSpeciesTotalLivingNotItemizedWeight(), null, + copyIfNull); + aliveNotItemizedBatch.setRankOrder((short) 1); + + // ----------------------------------------------------------------------------- + // Sorted Vrac / Species / Inert (not alive) + // ----------------------------------------------------------------------------- + SortingBatch inertBatch = catchBatchDao.getSortingBatch(speciesBatch.getChildBatchs(), "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_INERT); + if (inertBatch == null) { + inertBatch = SortingBatch.Factory.newInstance(); + speciesBatch.getChildBatchs().add(inertBatch); + } + beanToEntityReferenceTaxonBatch(target, speciesBatch, inertBatch, recorderDepartmentId, + enumeration.REFERENCE_TAXON_ID_INERT, + source.getSpeciesTotalInertWeight(), null, + copyIfNull); + inertBatch.setRankOrder((short) 2); + } + } + // TODO BL : benthos, plancton, macro déchet... + } + + // ----------------------------------------------------------------------------- + // Sorted Hors Vrac + // ----------------------------------------------------------------------------- + { + SortingBatch batch = catchBatchChilds.get(enumeration.QUALITATIVE_HORS_VRAC_ID); + if (batch == null) { + batch = SortingBatch.Factory.newInstance(); + target.getChildBatchs().add(batch); + } + beanToEntitySortingBatch(target, target, batch, recorderDepartmentId, + enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, + source.getCatchTotalUnsortedWeight(), null, + copyIfNull); + batch.setRankOrder((short) 2); + + // Manage childs : + { + Map<Integer, SortingBatch> batchChilds = getChildsMap(batch, enumeration.PMFM_ID_SORTING_TYPE); + + // Species : + SortingBatch speciesBatch = batchChilds.get(enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + if (speciesBatch == null) { + speciesBatch = SortingBatch.Factory.newInstance(); + if (batch.getChildBatchs() == null) { + batch.setChildBatchs(Lists.newArrayList((Batch) speciesBatch)); + } else { + batch.getChildBatchs().add(speciesBatch); + } + } + beanToEntitySortingBatch(target, batch, speciesBatch, recorderDepartmentId, + enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, + source.getSpeciesTotalUnsortedWeight(), null, + copyIfNull); + speciesBatch.setRankOrder((short) 1); + } + + // TODO BL : benthos, plancton, macro déchet... + } + + // ----------------------------------------------------------------------------- + // Unsorted (=rejected) + // ----------------------------------------------------------------------------- + // Unsorted : + SortingBatch unsortedBatch = catchBatchChilds.get(enumeration.QUALITATIVE_UNSORTED_ID); + if (unsortedBatch == null) { + unsortedBatch = SortingBatch.Factory.newInstance(); + target.getChildBatchs().add(unsortedBatch); + } + beanToEntitySortingBatch(target, target, unsortedBatch, recorderDepartmentId, + enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_UNSORTED_ID, + source.getCatchTotalRejectedWeight(), null, + copyIfNull); + unsortedBatch.setRankOrder((short) 3); + + } + + protected Map<Integer, SortingBatch> getChildsMap(Batch parentBatch, Integer pmfmId) { + Map<Integer, SortingBatch> batchByQualitativeValueId = new HashMap<Integer, SortingBatch>(); + if (parentBatch.getChildBatchs() == null) { + return batchByQualitativeValueId; + } + for (Batch childBatch : parentBatch.getChildBatchs()) { + SortingBatch childSortingBatch = (SortingBatch) childBatch; + SortingMeasurement sm = measurementHelper.getSortingMeasurement((SortingBatch) childBatch, pmfmId, null, false); + if (sm != null && sm.getQualitativeValue() != null && sm.getQualitativeValue().getId() != null) { + batchByQualitativeValueId.put(sm.getQualitativeValue().getId(), childSortingBatch); + } + } + return batchByQualitativeValueId; + } + + /** + * Retrieve child batchs if species is "Life" or "No life" + * (need to retrieve: speciesTotalLivingNotItemizedWeight and speciesTotalInertWeight) + * + * @param parentBatch + * @return + */ + protected Map<Integer, SortingBatch> getChildAliveNotSortedOrInert(Batch parentBatch) { + Map<Integer, SortingBatch> batchByQualitativeValueId = new HashMap<Integer, SortingBatch>(); + if (parentBatch.getChildBatchs() == null) { + return batchByQualitativeValueId; + } + for (Batch childBatch : parentBatch.getChildBatchs()) { + SortingBatch childSortingBatch = (SortingBatch) childBatch; + if (childSortingBatch.getReferenceTaxon() != null && childSortingBatch.getId().intValue() < 0) { + if (enumeration.REFERENCE_TAXON_ID_LIFE.equals(childSortingBatch.getId())) { + batchByQualitativeValueId.put(enumeration.REFERENCE_TAXON_ID_LIFE, childSortingBatch); + } else if (enumeration.REFERENCE_TAXON_ID_LIFE.equals(childSortingBatch.getId())) { + batchByQualitativeValueId.put(enumeration.REFERENCE_TAXON_ID_LIFE, childSortingBatch); + } + } + } + return batchByQualitativeValueId; + } + + protected void beanToEntitySortingBatch( + fr.ifremer.adagio.core.dao.data.batch.CatchBatch rootBatch, + fr.ifremer.adagio.core.dao.data.batch.Batch parentBatch, + fr.ifremer.adagio.core.dao.data.batch.SortingBatch target, + Integer recorderDepartmentId, + Integer sortingPmfmId, + Integer sortingQualitativeValueId, + Float weight, + Float sampleWeight, + boolean copyIfNull) { + + // Create lists to store all updates, then remove not updated items + Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); + if (target.getQuantificationMeasurements() != null) { + notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); + } + Set<SortingMeasurement> notChangedSortingMeasurements = new HashSet<SortingMeasurement>(); + if (target.getSortingMeasurements() != null) { + notChangedSortingMeasurements.addAll(target.getSortingMeasurements()); + } + + // Some mandatory properties : + target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); + target.setRootBatch(rootBatch); + target.setParentBatch(parentBatch); + target.setExhaustiveInventory(true); + + // No taxon or taxon group + target.setReferenceTaxon(null); + target.setTaxonGroup(null); + + // Sorting measurement + if (copyIfNull && (sortingPmfmId == null || sortingQualitativeValueId == null)) { + // Nothing to do : will be removed later, using notChangedSortingMeasurements + } else if (sortingPmfmId != null && sortingQualitativeValueId != null) { + SortingMeasurement sm = measurementHelper.setSortingMeasurement(target, recorderDepartmentId, sortingPmfmId, sortingQualitativeValueId); + notChangedSortingMeasurements.remove(sm); + } + + // Sampling Ratio + if (copyIfNull && (sampleWeight == null || weight == null)) { + target.setSamplingRatio(null); + target.setSamplingRatioText(null); + } else if (sampleWeight != null && weight != null) { + String samplingRatioText = weight + "/" + sampleWeight; + samplingRatioText = samplingRatioText.replaceAll(",", "."); + target.setSamplingRatioText(samplingRatioText); + target.setSamplingRatio(weight / sampleWeight); + } + + // Weight + if (copyIfNull && (sampleWeight == null && weight == null)) { + // Nothing to do : will be removed later, using notChangedQuantificationMeasurements + } else if (sampleWeight != null || weight != null) { + Float batchReferenceWeight = weight; + if (batchReferenceWeight == null) { + batchReferenceWeight = sampleWeight; + } + QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, batchReferenceWeight, true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } + + // Removed not changed measurements (in sorting and quantification measurement lists) + if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { + for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { + target.getQuantificationMeasurements().remove(qm); + } + } + if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { + for (SortingMeasurement sm : notChangedSortingMeasurements) { + target.getSortingMeasurements().remove(sm); + } + } + } + + protected void beanToEntityReferenceTaxonBatch( + fr.ifremer.adagio.core.dao.data.batch.CatchBatch rootBatch, + fr.ifremer.adagio.core.dao.data.batch.Batch parentBatch, + fr.ifremer.adagio.core.dao.data.batch.SortingBatch target, + Integer recorderDepartmentId, + Integer referenceTaxonId, + Float weight, + Float sampleWeight, + boolean copyIfNull) { + + // Create lists to store all updates, then remove not updated items + Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); + if (target.getQuantificationMeasurements() != null) { + notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); + } + Set<SortingMeasurement> notChangedSortingMeasurements = new HashSet<SortingMeasurement>(); + if (target.getSortingMeasurements() != null) { + notChangedSortingMeasurements.addAll(target.getSortingMeasurements()); + } + + // Some mandatory properties : + target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); + target.setRootBatch(rootBatch); + target.setParentBatch(parentBatch); + target.setExhaustiveInventory(true); + + // Reference taxon + target.setReferenceTaxon(load(ReferenceTaxonImpl.class, referenceTaxonId)); + target.setTaxonGroup(null); + + // Sampling Ratio + if (copyIfNull && (sampleWeight == null || weight == null)) { + target.setSamplingRatio(null); + target.setSamplingRatioText(null); + } else if (sampleWeight != null && weight != null) { + String samplingRatioText = weight + "/" + sampleWeight; + samplingRatioText = samplingRatioText.replaceAll(",", "."); + target.setSamplingRatioText(samplingRatioText); + target.setSamplingRatio(weight / sampleWeight); + } + + // Weight + if (copyIfNull && (sampleWeight == null && weight == null)) { + // Nothing to do : will be removed later, using notChangedQuantificationMeasurements + } else if (sampleWeight != null || weight != null) { + Float batchReferenceWeight = weight; + if (batchReferenceWeight == null) { + batchReferenceWeight = sampleWeight; + } + QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, batchReferenceWeight, true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } + + // Removed not changed measurements (in sorting and quantification measurement lists) + if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { + for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { + target.getQuantificationMeasurements().remove(qm); + } + } + if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { + for (SortingMeasurement sm : notChangedSortingMeasurements) { + target.getSortingMeasurements().remove(sm); + } + } + } + + protected Integer getRecorderDepartmentId() { + // TODO BL : voir si on peut récupérer le departement (du 1er saisisseur ?) + return enumeration.DEPARTMENT_ID_UNKNOWN_RECORDER_DEPARTMENT; + } +} Deleted: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceImpl.java 2013-02-14 10:40:25 UTC (rev 412) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceImpl.java 2013-02-14 15:27:16 UTC (rev 413) @@ -1,437 +0,0 @@ -package fr.ifremer.tutti.persistence.service; - -/* - * #%L - * Tutti :: Persistence API - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import com.google.common.base.Preconditions; -import com.google.common.collect.Lists; -import fr.ifremer.adagio.core.dao.data.batch.Batch; -import fr.ifremer.adagio.core.dao.data.batch.CatchBatchDao; -import fr.ifremer.adagio.core.dao.data.batch.SortingBatch; -import fr.ifremer.adagio.core.dao.data.batch.SortingBatchDao; -import fr.ifremer.adagio.core.dao.data.batch.denormalized.DenormalizedBatchDao; -import fr.ifremer.adagio.core.dao.data.measure.QuantificationMeasurement; -import fr.ifremer.adagio.core.dao.data.measure.SortingMeasurement; -import fr.ifremer.adagio.core.dao.data.operation.FishingOperationImpl; -import fr.ifremer.adagio.core.dao.referential.QualityFlagImpl; -import fr.ifremer.adagio.core.dao.technical.synchronization.SynchronizationStatus; -import fr.ifremer.tutti.persistence.entities.data.CatchBatch; -import fr.ifremer.tutti.persistence.service.measure.MeasurementPersistenceHelper; -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; -import org.hibernate.FlushMode; -import org.hibernate.type.IntegerType; -import org.springframework.dao.DataIntegrityViolationException; -import org.springframework.dao.DataRetrievalFailureException; -import org.springframework.stereotype.Service; - -import javax.annotation.Resource; -import java.util.HashMap; -import java.util.HashSet; -import java.util.Iterator; -import java.util.Map; -import java.util.Set; - -/** - * @author tchemit <chemit(a)codelutin.com> - * @since 1.0 - */ -@Service("catchBatchPersistenceService") -public class CatchBatchPersistenceServiceImpl extends AbstractPersistenceService implements CatchBatchPersistenceService { - - /** Logger. */ - private static final Log log = - LogFactory.getLog(CatchBatchPersistenceServiceImpl.class); - - @Resource(name = "referentialPersistenceService") - protected ReferentialPersistenceService referentialService; - - @Resource(name = "denormalizedBatchDao") - protected DenormalizedBatchDao denormalizedBatchDao; - - @Resource(name = "sortingBatchDao") - protected SortingBatchDao sortingBatchDao; - - @Resource(name = "catchBatchDao") - protected CatchBatchDao catchBatchDao; - - @Resource(name = "measurementPersistenceHelper") - protected MeasurementPersistenceHelper measurementHelper; - - - @Override - public CatchBatch getCatchBatchFromFishingOperation(String id) { - Preconditions.checkNotNull(id); - - Iterator<Object[]> list = queryList("catchBatch", - "fishingOperationId", IntegerType.INSTANCE, Integer.valueOf(id), - "pmfmIdSorted", IntegerType.INSTANCE, enumeration.PMFM_ID_SORTED_UNSORTED, - "pmfmIdSortingType", IntegerType.INSTANCE, enumeration.PMFM_ID_SORTING_TYPE); - - int rowCount = 0; - CatchBatch result = new CatchBatch(); - Integer previousSortedBatchId = null; - while (list.hasNext()) { - Object[] source = list.next(); - rowCount++; - - if (rowCount == 1) { - // Id - result.setId(source[0].toString()); - - // Total weight - Float totalWeight = (Float) source[1]; - result.setCatchTotalWeight(totalWeight); - } - - Integer sortedBatchId = (Integer) source[2]; - Integer sortedQualitativeValueId = (Integer) source[5]; - if (sortedBatchId != null && !sortedBatchId.equals(previousSortedBatchId)) { - // TODO BL : retrieve QV - String samplingRatioText = (String) source[3]; - Float weight = (Float) source[4]; - if (weight != null && enumeration.QUALITATIVE_VRAC_ID.equals(sortedQualitativeValueId)) { - result.setCatchTotalSortedCarousselWeight(weight); - result.setCatchTotalSortedTremisWeight(getTotalWeight(weight, samplingRatioText)); - } else if (weight != null && enumeration.QUALITATIVE_HORS_VRAC_ID.equals(sortedQualitativeValueId)) { - result.setCatchTotalUnsortedWeight(weight); - if (samplingRatioText != null && !samplingRatioText.isEmpty()) { - // TODO BL : throw error because baths are not compatible with tutti ?? - } - } else if (weight != null && enumeration.QUALITATIVE_UNSORTED_ID.equals(sortedQualitativeValueId)) { - result.setCatchTotalRejectedWeight(weight); - if (samplingRatioText != null && !samplingRatioText.isEmpty()) { - // TODO BL : throw error because baths are not compatible with tutti ?? - } - } - } - - Integer sortingTypeBatchId = (Integer) source[6]; - { - String samplingRatioText = (String) source[7]; - Float weight = (Float) source[8]; - Integer qualitativeValueId = (Integer) source[9]; - if (weight != null) { - if (enumeration.QUALITATIVE_VRAC_ID.equals(sortedQualitativeValueId) - && enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES.equals(qualitativeValueId)) { - result.setSpeciesTotalSampleSortedWeight(weight); - result.setSpeciesTotalSortedWeight(getTotalWeight(weight, samplingRatioText)); - } else if (enumeration.QUALITATIVE_HORS_VRAC_ID.equals(sortedQualitativeValueId) - && enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES.equals(qualitativeValueId)) { - result.setSpeciesTotalUnsortedWeight(weight); - // TODO error si samplingRatio not null - } - // TOBO BL : add benthos, plancton, etc. - } - } - - - previousSortedBatchId = sortedBatchId; - } - - return result; - } - - @Override - public CatchBatch createCatchBatch(CatchBatch bean) { - Preconditions.checkNotNull(bean); - Preconditions.checkArgument(bean.getId() == null); - Preconditions.checkNotNull(bean.getFishingOperation()); - Preconditions.checkNotNull(bean.getFishingOperation().getId()); - - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = fr.ifremer.adagio.core.dao.data.batch.CatchBatch.Factory.newInstance(); - beanToEntity(bean, catchBatch, true); - catchBatch = catchBatchDao.create(catchBatch); - bean.setId(String.valueOf(catchBatch.getId())); - - // Link to fishing operation - getCurrentSession().flush(); - Integer fishingOperationId = Integer.valueOf(bean.getFishingOperation().getId()); - int rowUpdated = queryUpdate("updateFishingOperationCatchBatch", - "fishingOperationId", IntegerType.INSTANCE, fishingOperationId, - "catchBatchId", IntegerType.INSTANCE, catchBatch.getId()); - if (rowUpdated == 0) { - throw new DataIntegrityViolationException("Could not attach catch batch to the given operation : operation was not found."); - } - - return bean; - } - - @Override - public CatchBatch saveCatchBatch(CatchBatch bean) { - - Preconditions.checkNotNull(bean); - Preconditions.checkNotNull(bean.getId()); - - getCurrentSession().enableFetchProfile("batch-with-childs"); - getCurrentSession().setFlushMode(FlushMode.COMMIT); - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.load(Integer.valueOf(bean.getId())); - if (catchBatch == null) { - throw new DataRetrievalFailureException("Could not retrieve catch batch with id=" + bean.getId()); - } - - beanToEntity(bean, catchBatch, true); - catchBatchDao.update(catchBatch); - getCurrentSession().flush(); - return bean; - } - - // ------------------------------------------------------------------------// - // -- Internal methods --// - // ------------------------------------------------------------------------// - protected void beanToEntity(CatchBatch source, - fr.ifremer.adagio.core.dao.data.batch.CatchBatch target, - boolean copyIfNull) { - Preconditions.checkNotNull(source.getFishingOperation()); - Preconditions.checkNotNull(source.getFishingOperation().getId()); - - // Retrieve recorder department - // TODO BLA : prendre le service du 1er saisisseur sur l'OP ? - Integer recorderDepartmentId = enumeration.DEPARTMENT_ID_UNKNOWN_RECORDER_DEPARTMENT; - - // First initialization (when created) - Integer fishingOperationId = Integer.valueOf(source.getFishingOperation().getId()); - target.setFishingOperation(load(FishingOperationImpl.class, fishingOperationId)); - - target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); - target.setRankOrder((short) 1); - target.setSynchronizationStatus(SynchronizationStatus.DIRTY.getValue()); - - // Create lists to store all updates, then remove not updated items - Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); - if (target.getQuantificationMeasurements() != null) { - notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); - } - - // Total Weight - if (copyIfNull && source.getCatchTotalWeight() == null) { - // Nothing to do : will be removed later, using notChangedQuantificationMeasurements - } else if (source.getCatchTotalWeight() != null) { - QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getCatchTotalWeight(), true); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } - - // Removed not changed measurements (in sorting and quantification measurement lists) - if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { - for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { - target.getQuantificationMeasurements().remove(qm); - } - } - Map<Integer, SortingBatch> catchBatchChilds = getChildsMap(target, enumeration.PMFM_ID_SORTED_UNSORTED); - - // ----------------------------------------------------------------------------- - // Sorted Vrac - // ----------------------------------------------------------------------------- - { - SortingBatch batch = catchBatchChilds.get(enumeration.QUALITATIVE_VRAC_ID); - if (batch == null) { - batch = SortingBatch.Factory.newInstance(); - target.getChildBatchs().add(batch); - } - beanToEntitySortingBatch(target, target, batch, recorderDepartmentId, - enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, - source.getCatchTotalSortedTremisWeight(), source.getCatchTotalSortedCarousselWeight(), - copyIfNull); - batch.setRankOrder((short) 1); - - // Manage childs : - { - Map<Integer, SortingBatch> batchChilds = getChildsMap(batch, enumeration.PMFM_ID_SORTING_TYPE); - - // Species : - SortingBatch speciesBatch = batchChilds.get(enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); - if (speciesBatch == null) { - speciesBatch = SortingBatch.Factory.newInstance(); - if (batch.getChildBatchs() == null) { - batch.setChildBatchs(Lists.newArrayList((Batch) speciesBatch)); - } else { - batch.getChildBatchs().add(speciesBatch); - } - } - beanToEntitySortingBatch(target, batch, speciesBatch, recorderDepartmentId, - enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, - source.getSpeciesTotalSortedWeight(), source.getSpeciesTotalSampleSortedWeight(), - copyIfNull); - speciesBatch.setRankOrder((short) 1); - } - // TODO BL : benthos, plancton, macro déchet... - } - - // ----------------------------------------------------------------------------- - // Sorted Hors Vrac - // ----------------------------------------------------------------------------- - { - SortingBatch batch = catchBatchChilds.get(enumeration.QUALITATIVE_HORS_VRAC_ID); - if (batch == null) { - batch = SortingBatch.Factory.newInstance(); - target.getChildBatchs().add(batch); - } - beanToEntitySortingBatch(target, target, batch, recorderDepartmentId, - enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, - source.getCatchTotalUnsortedWeight(), null, - copyIfNull); - batch.setRankOrder((short) 2); - - // Manage childs : - { - Map<Integer, SortingBatch> batchChilds = getChildsMap(batch, enumeration.PMFM_ID_SORTING_TYPE); - - // Species : - SortingBatch speciesBatch = batchChilds.get(enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); - if (speciesBatch == null) { - speciesBatch = SortingBatch.Factory.newInstance(); - if (batch.getChildBatchs() == null) { - batch.setChildBatchs(Lists.newArrayList((Batch) speciesBatch)); - } else { - batch.getChildBatchs().add(speciesBatch); - } - } - beanToEntitySortingBatch(target, batch, speciesBatch, recorderDepartmentId, - enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, - source.getSpeciesTotalUnsortedWeight(), null, - copyIfNull); - speciesBatch.setRankOrder((short) 1); - } - - // TODO BL : benthos, plancton, macro déchet... - } - - // ----------------------------------------------------------------------------- - // Unsorted (=rejected) - // ----------------------------------------------------------------------------- - // Unsorted : - SortingBatch unsortedBatch = catchBatchChilds.get(enumeration.QUALITATIVE_UNSORTED_ID); - if (unsortedBatch == null) { - unsortedBatch = SortingBatch.Factory.newInstance(); - target.getChildBatchs().add(unsortedBatch); - } - beanToEntitySortingBatch(target, target, unsortedBatch, recorderDepartmentId, - enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_UNSORTED_ID, - source.getCatchTotalRejectedWeight(), null, - copyIfNull); - unsortedBatch.setRankOrder((short) 3); - - - } - - protected Map<Integer, SortingBatch> getChildsMap(Batch parentBatch, Integer pmfmId) { - Map<Integer, SortingBatch> batchByQualitativeValueId = new HashMap<Integer, SortingBatch>(); - if (parentBatch.getChildBatchs() == null) { - return batchByQualitativeValueId; - } - for (Batch childBatch : parentBatch.getChildBatchs()) { - SortingMeasurement sm = measurementHelper.getSortingMeasurement((SortingBatch) childBatch, pmfmId, null, false); - if (sm != null && sm.getQualitativeValue() != null && sm.getQualitativeValue().getId() != null) { - batchByQualitativeValueId.put(sm.getQualitativeValue().getId(), (SortingBatch) childBatch); - } - } - return batchByQualitativeValueId; - } - - protected void beanToEntitySortingBatch( - fr.ifremer.adagio.core.dao.data.batch.CatchBatch rootBatch, - fr.ifremer.adagio.core.dao.data.batch.Batch parentBatch, - fr.ifremer.adagio.core.dao.data.batch.SortingBatch target, - Integer recorderDepartmentId, - Integer sortingPmfmId, - Integer sortingQualitativeValueId, - Float weight, - Float sampleWeight, - boolean copyIfNull) { - - // Create lists to store all updates, then remove not updated items - Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); - if (target.getQuantificationMeasurements() != null) { - notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); - } - Set<SortingMeasurement> notChangedSortingMeasurements = new HashSet<SortingMeasurement>(); - if (target.getSortingMeasurements() != null) { - notChangedSortingMeasurements.addAll(target.getSortingMeasurements()); - } - - // Some mandatory properties : - target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); - target.setRootBatch(rootBatch); - target.setParentBatch(parentBatch); - - // Sorting measurement - if (copyIfNull && (sortingPmfmId == null || sortingQualitativeValueId == null)) { - // Nothing to do : will be removed later, using notChangedSortingMeasurements - } else if (sortingPmfmId != null && sortingQualitativeValueId != null) { - SortingMeasurement sm = measurementHelper.setSortingMeasurement(target, recorderDepartmentId, sortingPmfmId, sortingQualitativeValueId); - notChangedSortingMeasurements.remove(sm); - } - - // Sampling Ratio - if (copyIfNull && (sampleWeight == null || weight == null)) { - target.setSamplingRatio(null); - target.setSamplingRatioText(null); - } else if (sampleWeight != null && weight != null) { - String samplingRatioText = sampleWeight + "/" + weight; - samplingRatioText = samplingRatioText.replaceAll(",", "."); - target.setSamplingRatioText(samplingRatioText); - target.setSamplingRatio(sampleWeight / weight); - } - - // Weight - if (copyIfNull && (sampleWeight == null && weight == null)) { - // Nothing to do : will be removed later, using notChangedQuantificationMeasurements - } else if (sampleWeight != null || weight != null) { - Float batchReferenceWeight = sampleWeight; - if (batchReferenceWeight == null) { - batchReferenceWeight = weight; - } - QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, batchReferenceWeight, true); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } - - // Removed not changed measurements (in sorting and quantification measurement lists) - if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { - for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { - target.getQuantificationMeasurements().remove(qm); - } - } - if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { - for (SortingMeasurement sm : notChangedSortingMeasurements) { - target.getSortingMeasurements().remove(sm); - } - } - } - - protected Float getTotalWeight(Float weight, String samplingRatioText) { - if (weight == null) { - return null; - } - String startStr = weight.toString().replace(',', '.') + "/"; - if (samplingRatioText != null && samplingRatioText.startsWith(startStr)) { - String weightStr = samplingRatioText.substring(startStr.length()); - if (weightStr != null && !weightStr.isEmpty()) { - return Float.parseFloat(weightStr); - } - } - // TODO BL : attention au saise "1/2" qui ne seront pas pris (mais "1.0/2.0" oui) - return null; - } - -} Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceService.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceService.java 2013-02-14 10:40:25 UTC (rev 412) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceService.java 2013-02-14 15:27:16 UTC (rev 413) @@ -188,7 +188,9 @@ Caracteristic getCaracteristic(Integer pmfmId); boolean isSortedQualitativeValue(CaracteristicQualitativeValue value); - + + List<Integer> getSampleCategoryIds(); + /** * Import given temporary species. * Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceServiceImpl.java 2013-02-14 10:40:25 UTC (rev 412) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceServiceImpl.java 2013-02-14 15:27:16 UTC (rev 413) @@ -815,6 +815,20 @@ } /** + * Return list of protected pmfm for sample category + * (i.e. to check the validity of a existing batch tree) + * + * @return + */ + public List<Integer> getSampleCategoryIds() { + return Lists.newArrayList(enumeration.PMFM_ID_SORTED_UNSORTED + , enumeration.PMFM_ID_SIZE_CATEGORY + , enumeration.PMFM_ID_MATURITY + , enumeration.PMFM_ID_SEX + , enumeration.PMFM_ID_AGE); + } + + /** * Return true if the pmfm should NOT be used for caracteristics lists * (i.e. because used somewhere when storing some properties into the database) * Deleted: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceImpl.java 2013-02-14 10:40:25 UTC (rev 412) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceImpl.java 2013-02-14 15:27:16 UTC (rev 413) @@ -1,812 +0,0 @@ -package fr.ifremer.tutti.persistence.service; - -/* - * #%L - * Tutti :: Persistence API - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import com.google.common.base.Preconditions; -import com.google.common.collect.Lists; -import com.google.common.collect.Maps; -import fr.ifremer.adagio.core.dao.data.batch.CatchBatchDao; -import fr.ifremer.adagio.core.dao.data.batch.CatchBatchImpl; -import fr.ifremer.adagio.core.dao.data.batch.SortingBatch; -import fr.ifremer.adagio.core.dao.data.batch.SortingBatchDao; -import fr.ifremer.adagio.core.dao.data.batch.SortingBatchImpl; -import fr.ifremer.adagio.core.dao.data.batch.denormalized.DenormalizedBatchDao; -import fr.ifremer.adagio.core.dao.data.measure.QuantificationMeasurement; -import fr.ifremer.adagio.core.dao.data.measure.SortingMeasurement; -import fr.ifremer.adagio.core.dao.referential.QualityFlagImpl; -import fr.ifremer.adagio.core.dao.referential.taxon.ReferenceTaxon; -import fr.ifremer.adagio.core.dao.referential.taxon.ReferenceTaxonImpl; -import fr.ifremer.tutti.persistence.entities.data.SampleCategoryEnum; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; -import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; -import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; -import fr.ifremer.tutti.persistence.entities.referential.CaracteristicType; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import fr.ifremer.tutti.persistence.service.measure.MeasurementPersistenceHelper; -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; -import org.hibernate.FlushMode; -import org.hibernate.type.IntegerType; -import org.springframework.dao.DataIntegrityViolationException; -import org.springframework.stereotype.Service; - -import javax.annotation.Resource; -import java.io.Serializable; -import java.text.MessageFormat; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.HashSet; -import java.util.Iterator; -import java.util.List; -import java.util.Map; -import java.util.Set; - -/** - * @author tchemit <chemit(a)codelutin.com> - * @since 0.3 - */ -@Service("speciesBatchPersistenceService") -public class SpeciesBatchPersistenceServiceImpl extends - AbstractPersistenceService implements SpeciesBatchPersistenceService { - - /** Logger. */ - private static final Log log = LogFactory - .getLog(SpeciesBatchPersistenceServiceImpl.class); - - @Resource(name = "referentialPersistenceService") - protected ReferentialPersistenceService referentialService; - - @Resource(name = "denormalizedBatchDao") - protected DenormalizedBatchDao denormalizedBatchDao; - - @Resource(name = "sortingBatchDao") - protected SortingBatchDao sortingBatchDao; - - @Resource(name = "catchBatchDao") - protected CatchBatchDao catchBatchDao; - - @Resource(name = "measurementPersistenceHelper") - protected MeasurementPersistenceHelper measurementHelper; - - @Override - public List<SpeciesBatch> getAllRootSpeciesBatch(String fishingOperationId) { - Iterator<Object[]> list = queryList("allSpeciesBatch", - "fishingOperationId", IntegerType.INSTANCE, Integer.valueOf(fishingOperationId)); - - List<SpeciesBatch> result = new ArrayList<SpeciesBatch>(); - List<SpeciesBatch> rootBatchs = new ArrayList<SpeciesBatch>(); - - Map<String, SpeciesBatch> batchMapById = new HashMap<String, SpeciesBatch>(); - //TODO BLA : uncomment if a property speciesBatch.speciesBatchFrequency exists - //Map<String, List<SpeciesBatchFrequency>> batchFrequenciesMapByParentId = new HashMap<String, List<SpeciesBatchFrequency>>(); - Map<String, String> parentBatchMapById = new HashMap<String, String>(); - while (list.hasNext()) { - Object[] source = list.next(); - - Integer parentbatchId = (Integer) source[11]; - - // If row is not a species batch, load as batch frequency - if (couldBeASpeciesBatchFrequency(source)) { - //TODO BLA : uncomment if a property speciesBatch.speciesBatchFrequency exists - //loadSpeciesBatchFrequency(source, batchFrequenciesMapByParentId); - } else { - // In all case, load row as species batch - SpeciesBatch speciesBatch = loadSpeciesBatch(source); - - // Add result into a maps - batchMapById.put(speciesBatch.getId(), speciesBatch); - if (parentbatchId != null) { - parentBatchMapById.put(speciesBatch.getId(), parentbatchId.toString()); - } - } - } - - // Retrieve the parent links for all batchs - for (SpeciesBatch speciesBatch : batchMapById.values()) { - // If retrieve the parent from the parent map - String parentbatchId = parentBatchMapById.get(speciesBatch.getId()); - if (parentbatchId != null) { - SpeciesBatch parentSpeciesBatch = batchMapById.get(parentbatchId); - - // If found, link the batch with its parent : - if (parentSpeciesBatch != null) { - speciesBatch.setParentBatch(parentSpeciesBatch); - if (parentSpeciesBatch.getChildBatchs() == null) { - parentSpeciesBatch.setChildBatchs(Lists.newArrayList(speciesBatch)); - } else { - parentSpeciesBatch.addChildBatchs(speciesBatch); - } - } - - // If no parent found, the batch should be a direct child of the catch batch - else { - rootBatchs.add(speciesBatch); - } - - //TODO BLA : uncomment if a property speciesBatch.speciesBatchFrequency exists - //List<SpeciesBatchFrequency> batchFrequencies = batchFrequenciesMapByParentId.get(speciesBatch.getId()); - //if (batchFrequencies != null) { - // speciesBatch.setSpeciesBatchFrequency(batchFrequencies); - //} - } - } - - // Apply inheritance, starting with the catch batch children - applyInheritedProperties(rootBatchs, null, null, result); - - return result; - } - - @Override - public SpeciesBatch createSpeciesBatch(SpeciesBatch bean, - String parentBatchId) { - Preconditions.checkNotNull(bean); - Preconditions.checkArgument(bean.getId() == null); - Preconditions.checkNotNull(bean.getSpecies()); - Preconditions.checkNotNull(bean.getSpecies().getId()); - Preconditions.checkNotNull(bean.getFishingOperation()); - Preconditions.checkNotNull(bean.getFishingOperation().getId()); - // TODO BLA uncomment this after v1.0 : - //Preconditions.checkNotNull(bean.getCatchBatch()); - - getCurrentSession().setFlushMode(FlushMode.COMMIT); - - SortingBatch batch = SortingBatch.Factory.newInstance(); - beanToEntity(bean, batch, parentBatchId, true); - batch = sortingBatchDao.create(batch); - - bean.setId(String.valueOf(batch.getId())); - - getCurrentSession().flush(); - - return bean; - } - - @Override - public SpeciesBatch saveSpeciesBatch(SpeciesBatch bean) { - Preconditions.checkNotNull(bean); - Preconditions.checkNotNull(bean.getId()); - - // TODO BL : pourquoi un clear() ? => pas nécessaire. - //getCurrentSession().clear(); - - getCurrentSession().enableFetchProfile("batch-with-measurements"); - getCurrentSession().setFlushMode(FlushMode.COMMIT); - SortingBatch batch = sortingBatchDao.load(Integer.valueOf(bean.getId())); - String parentBatchId = null; - if (bean.getParentBatch() != null) { - parentBatchId = bean.getParentBatch().getId(); - } - beanToEntity(bean, batch, parentBatchId, true); - sortingBatchDao.update(batch); - getCurrentSession().flush(); - return bean; - } - - @Override - public void deleteSpeciesBatch(String id) { - Preconditions.checkNotNull(id); - - getCurrentSession().setFlushMode(FlushMode.COMMIT); - - List<SortingBatch> allChildrenBatchs = Lists.newArrayList(); - removeAllChildrenBatchs(Integer.valueOf(id), allChildrenBatchs); - - getCurrentSession().flush(); - } - - @Override - public void deleteSpeciesSubBatch(String id) { - deleteSpeciesBatch(id); - } - - @Override - public void changeSpeciesBatchSpecies(String batchId, Species species) { - Preconditions.checkNotNull(batchId); - Preconditions.checkNotNull(species); - Preconditions.checkNotNull(species.getReferenceTaxonId()); - - if (log.isDebugEnabled()) { - log.debug("Changing species for batch id="+batchId); - } - - int rowUpdated = queryUpdate("updateBatchSpecies", - "batchId", IntegerType.INSTANCE, Integer.valueOf(batchId), - "referenceTaxonId", IntegerType.INSTANCE, species.getReferenceTaxonId()); - } - - @Override - public List<SpeciesBatchFrequency> getAllSpeciesBatchFrequency( - String speciesBatchId) { - Iterator<Object[]> list = queryList("allSpeciesBatchFrequency", - "parentBatchId", IntegerType.INSTANCE, Integer.valueOf(speciesBatchId)); - - List<SpeciesBatchFrequency> results = Lists.newArrayList(); - - while (list.hasNext()) { - Object[] source = list.next(); - SpeciesBatchFrequency target = new SpeciesBatchFrequency(); - - int colIndex = 0; - target.setId(source[colIndex++].toString()); - - target.setNumber((Integer) source[colIndex++]); - target.setWeight((Float) source[colIndex++]); - target.setComment((String) source[colIndex++]); - - // Length step category - Integer lengthPmfmId = (Integer) source[colIndex++]; - Caracteristic lengthStepCaracteristic = referentialService.getCaracteristic(lengthPmfmId); - target.setLengthStepCaracteristic(lengthStepCaracteristic); - - // Length - target.setLengthStep((Float) source[colIndex++]); - results.add(target); - } - return results; - } - - - @Override - public List<SpeciesBatchFrequency> saveSpeciesBatchFrequency( - String speciesBatchId, List<SpeciesBatchFrequency> frequencies) { - Preconditions.checkNotNull(speciesBatchId); - Preconditions.checkNotNull(frequencies); - - if (frequencies.size() == 0) { - return frequencies; - } - getCurrentSession().setFlushMode(FlushMode.COMMIT); - getCurrentSession().enableFetchProfile("batch-with-measurements"); - - // Retirve parent - SortingBatch parentBatch = sortingBatchDao.load(Integer.valueOf(speciesBatchId)); - - short rankOrder = 0; - String pmfmId = null; - Map<SortingBatch, SpeciesBatchFrequency> batchsToCreate = Maps.newHashMap(); - List<SortingBatch> batchsToUpdate = Lists.newArrayList(); - for (SpeciesBatchFrequency source : frequencies) { - rankOrder++; - - // Check that all frequencies have the same length PMFM - if (pmfmId == null) { - source.getLengthStepCaracteristic().getId(); - } else if (!pmfmId.equals(source.getLengthStepCaracteristic().getId())) { - throw new DataIntegrityViolationException("Batch frequencies under one Speciesbatch must have all the same lengthStepCaracteristic"); - } - - // Not existing batch - SortingBatch target = null; - if (source.getId() == null) { - target = SortingBatch.Factory.newInstance(); - - // Fill the sorting batch from the source - beanToEntity(source, target, parentBatch, rankOrder, true); - - // Create the targeted batch, then update the source id - sortingBatchDao.create(target); - source.setId(target.getId().toString()); - } - - // Existing batch - else { - target = sortingBatchDao.load(Integer.valueOf(source.getId())); - - // Fill the sorting batch from the source - beanToEntity(source, target, parentBatch, rankOrder, true); - - // Add the batch into a list (will be update later, using this list) - batchsToUpdate.add(target); - } - } - - // If some batchs need to be update, do it - if (batchsToUpdate.size() > 0) { - sortingBatchDao.update(batchsToUpdate); - } - - getCurrentSession().flush(); - - return frequencies; - } - - // ------------------------------------------------------------------------// - // -- Internal methods --// - // ------------------------------------------------------------------------// - protected void beanToEntity(SpeciesBatch source, SortingBatch target, String parentBatchId, boolean copyIfNull) { - Preconditions.checkNotNull(source.getFishingOperation()); - Preconditions.checkNotNull(source.getFishingOperation().getId()); - - // Retrieve recorder department - // TODO BLA : prendre le service du 1er saisisseur ? - Integer recorderDepartmentId = enumeration.DEPARTMENT_ID_UNKNOWN_RECORDER_DEPARTMENT; - - // Create lists to store all updates, then remove not updated items - Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); - if (target.getQuantificationMeasurements() != null) { - notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); - } - Set<SortingMeasurement> notChangedSortingMeasurements = new HashSet<SortingMeasurement>(); - if (target.getSortingMeasurements() != null) { - notChangedSortingMeasurements.addAll(target.getSortingMeasurements()); - } - - // If parent and root need to be set - if (target.getId() == null - || target.getRootBatch() == null - || (target.getParentBatch() != null && !target.getParentBatch().getId().toString().equals(parentBatchId))) { - setBatchParents(source, target, parentBatchId, notChangedSortingMeasurements); - } - - // RankOrder - if (target.getRankOrder() == null) { - short rankOrder = (short) 1; - if (source.getParentBatch() != null && source.getParentBatch().getChildBatchs() != null) { - // TODO BL : vérifier cela (est-ce que l'item est ajouté à son père AVANT d'être passé au service ?) - rankOrder = (short) source.getParentBatch().getChildBatchs().size(); - } - target.setRankOrder(rankOrder); - } - - // Weight or SampleCategoryWeight - if (copyIfNull && source.getWeight() == null && source.getSampleCategoryWeight() == null) { - // Nothing to do : will be removed later, using notChangedSortingMeasurements - } else if (source.getSampleCategoryWeight() != null && source.getWeight() == null) { - QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getSampleCategoryWeight(), true); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } else if (source.getWeight() != null && source.getSampleCategoryWeight() == null) { - QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getWeight(), true); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } - - // Sampling Ratio - if (copyIfNull && (source.getSampleCategoryWeight() == null || source.getWeight() == null)) { - target.setSamplingRatio(null); - target.setSamplingRatioText(null); - } else if (source.getSampleCategoryWeight() != null && source.getWeight() != null) { - String samplingRatioText = source.getWeight() + "/" + source.getSampleCategoryWeight(); - samplingRatioText = samplingRatioText.replaceAll(",", "."); - target.setSamplingRatioText(samplingRatioText); - target.setSamplingRatio(source.getWeight() / source.getSampleCategoryWeight()); - QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getWeight(), true); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } - - // Sorting measurement - if (copyIfNull && (source.getSampleCategoryType() == null || source.getSampleCategoryValue() == null)) { - // Nothing to do : will be removed later, using notChangedSortingMeasurements - } else if (source.getSampleCategoryType() != null && source.getSampleCategoryValue() != null) { - Integer pmfmId = measurementHelper.sampleCategory2PmfmId(source.getSampleCategoryType()); - // Do not store sorting measurement if pmfm = SORTED (already store in an ancestor batch) - if (!pmfmId.equals(enumeration.PMFM_ID_SORTED_UNSORTED)) { - SortingMeasurement sortingMeasurement = measurementHelper.setSortingMeasurement(target, recorderDepartmentId, source.getSampleCategoryType(), source.getSampleCategoryValue()); - notChangedSortingMeasurements.remove(sortingMeasurement); - } - } - - // Individual count - if (copyIfNull && source.getNumber() == null) { - target.setIndividualCount(null); - } else if (source.getNumber() != null) { - target.setIndividualCount(source.getNumber()); - } - - // Species - if (copyIfNull && (source.getSpecies() == null || parentBatchId != null)) { - target.setReferenceTaxon(null); - } else if (source.getSpecies() != null && parentBatchId == null) { - ReferenceTaxon referenceTaxon = load(ReferenceTaxonImpl.class, source.getSpecies().getReferenceTaxonId()); - target.setReferenceTaxon(referenceTaxon); - } - - // QualityFlag - if (source.isSpeciesToConfirm()) { - target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_DOUBTFUL)); - } else { - target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); - } - - // Comments - if (copyIfNull && source.getComment() == null) { - target.setComments(null); - } else if (source.getComment() != null) { - target.setComments(source.getComment()); - } - - // Removed not changed measurements (in sorting and quantification measurement lists) - if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { - for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { - target.getQuantificationMeasurements().remove(qm); - } - } - if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { - for (SortingMeasurement sm : notChangedSortingMeasurements) { - target.getSortingMeasurements().remove(sm); - } - } - } - - public void setBatchParents(SpeciesBatch source, SortingBatch target, String parentBatchIdStr, - Set<SortingMeasurement> notChangedSortingMeasurements) { - - Preconditions.checkNotNull(target); - Preconditions.checkNotNull(source.getFishingOperation()); - Preconditions.checkNotNull(source.getFishingOperation().getId()); - - // Retrieve parent and root batch - if (parentBatchIdStr == null) { - // Retrieve category type - Integer pmfmId = measurementHelper.sampleCategory2PmfmId(source.getSampleCategoryType()); - if (pmfmId == null || !pmfmId.equals(enumeration.PMFM_ID_SORTED_UNSORTED)) { - throw new DataIntegrityViolationException(MessageFormat.format("A species batch with no parent should have a sampleCategoryType {0} (PMFM.ID={1})", - SampleCategoryEnum.sortedUnsorted.name(), enumeration.PMFM_ID_SORTED_UNSORTED)); - } - Integer qualitativeValueId = convertSampleCategoryValueIntoQualitativeId(source.getSampleCategoryValue()); - - Object[] cols = queryUnique("parentBatch", - "fishingOperationId", IntegerType.INSTANCE, Integer.valueOf(source.getFishingOperation().getId()), - "pmfmIdSorted", IntegerType.INSTANCE, enumeration.PMFM_ID_SORTED_UNSORTED, - "qualitativeIdSorted", IntegerType.INSTANCE, qualitativeValueId, - "pmfmIdSortingType", IntegerType.INSTANCE, enumeration.PMFM_ID_SORTING_TYPE, - "qualitativeIdSortingType", IntegerType.INSTANCE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); - - if (cols == null) { - throw new DataIntegrityViolationException("Catch batchs not presents, or invalid batch tree structure. Please make sure CatchBatch has been saved before to create a SpeciesBatch."); - } - // Parent Batch - Integer parentBatchId = (Integer) cols[0]; - SortingBatch parentBatch = load(SortingBatchImpl.class, parentBatchId); - target.setParentBatch(parentBatch); - - // Root Batch - Integer rootBatchId = (Integer) cols[1]; - target.setRootBatch(load(CatchBatchImpl.class, rootBatchId)); - } - - // Load existing parent and root - else { - SortingBatch parentBatch = load(SortingBatchImpl.class, Integer.valueOf(parentBatchIdStr)); - target.setParentBatch(parentBatch); - target.setRootBatch(parentBatch.getRootBatch()); - } - } - - protected SpeciesBatch loadSpeciesBatch(Object[] source) { - int colIndex = 0; - - SpeciesBatch result = new SpeciesBatch(); - result.setId(source[colIndex++].toString()); - - // Individual count - result.setNumber((Integer) source[colIndex++]); - - // Convert database weight (and sampling ratio) into UI weight and sampleCategoryWeight - Float sourceWeight = (Float) source[colIndex++]; - Float sourceSamplingRatio = (Float) source[colIndex++]; - String sourceSamplingRatioText = (String) source[colIndex++]; - UIWeight uiWeight = convertDatabase2UI(sourceWeight, sourceSamplingRatio, sourceSamplingRatioText); - result.setWeight(uiWeight.weight); - result.setSampleCategoryWeight(uiWeight.sampleCategoryWeight); - - // Comments - result.setComment((String) source[colIndex++]); - - // Sample category type - Integer pmfmId = (Integer) source[colIndex++]; - - // Sample category value - Integer qvValue = (Integer) source[colIndex++]; - Float numValue = (Float) source[colIndex++]; - String alphaValue = (String) source[colIndex++]; - if (pmfmId != null) { - setSampleCategoryQualitative(result, pmfmId, numValue, alphaValue, qvValue); - } - - // Species - Integer referenceTaxonId = (Integer) source[colIndex++]; - if (referenceTaxonId != null) { - // TODO : add cache on getSpeciesByReferenceTaxonId - Species species = referentialService.getSpeciesByReferenceTaxonId(referenceTaxonId); - result.setSpecies(species); - } - - return result; - } - - protected void applyInheritedProperties(List<SpeciesBatch> speciesBatchs, CaracteristicQualitativeValue inheritedSortedUnsortedValue, Species inheritedSpecies, List<SpeciesBatch> results) { - if (speciesBatchs == null || speciesBatchs.size() == 0) { - return; - } - for (SpeciesBatch speciesBatch : speciesBatchs) { - // If batch store a species (in the database) - if (speciesBatch.getSpecies() != null) { - // Remove the link to the parent (not need in UI) - speciesBatch.setParentBatch(null); - // Store into result list only if species has been set (=species root batch) - results.add(speciesBatch); - } - - // Apply sampleCategoryValue inheritance, if need - if (inheritedSortedUnsortedValue != null && speciesBatch.getSampleCategoryType() == null) { - speciesBatch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); - speciesBatch.setSampleCategoryValue(inheritedSortedUnsortedValue); - } - - // Apply species inheritance, if need - if (speciesBatch.getSpecies() == null && inheritedSpecies != null) { - speciesBatch.setSpecies(inheritedSpecies); - } - - // Compute the inheritance sorted/unsorted value for children - if (speciesBatch.getSampleCategoryType() == SampleCategoryEnum.sortedUnsorted) { - inheritedSortedUnsortedValue = (CaracteristicQualitativeValue) speciesBatch.getSampleCategoryValue(); - } else { - inheritedSortedUnsortedValue = null; - } - - // Recursive call : propagate species and sorted/unsorted value - applyInheritedProperties(speciesBatch.getChildBatchs(), - inheritedSortedUnsortedValue, - speciesBatch.getSpecies(), - results); - } - } - - Integer convertSampleCategoryValueIntoQualitativeId(Serializable value) { - if (value == null) return null; - Integer qualitativeValueId = null; - if (value instanceof CaracteristicQualitativeValue) { - CaracteristicQualitativeValue cqValue = (CaracteristicQualitativeValue) value; - qualitativeValueId = Integer.valueOf(cqValue.getId()); - } else if (value instanceof String) { - qualitativeValueId = Integer.valueOf((String) value); - } - return qualitativeValueId; - } - - protected void setSampleCategoryQualitative(SpeciesBatch target, Integer pmfmId, Float numericalvalue, String alphanumericalValue, Integer qualitativeValueId) { - // skip if null or corresponding to the SORTING_TYPE PMFM (Expèce, Benthos, Plancton, etc.) - if (pmfmId == null || pmfmId.equals(enumeration.PMFM_ID_SORTING_TYPE)) { - return; - } - - SampleCategoryEnum sampleCategory = referentialService.getSampleCategoryByPmfmId(pmfmId); - Preconditions.checkNotNull(sampleCategory, "Unable to find corresponding SampleCategoryEnum for PMFM.ID : " + pmfmId); - - target.setSampleCategoryType(sampleCategory); - if (numericalvalue != null) { - target.setSampleCategoryValue(numericalvalue); - return; - } - if (alphanumericalValue != null) { - target.setSampleCategoryValue(alphanumericalValue); - return; - } - - Caracteristic caracteristic = referentialService.getCaracteristic(pmfmId); - if (caracteristic == null || caracteristic.getCaracteristicType() != CaracteristicType.QUALITATIVE) { - return; - } - CaracteristicQualitativeValue value = null; - for (CaracteristicQualitativeValue qv : caracteristic.getQualitativeValue()) { - if (qualitativeValueId == Integer.parseInt(qv.getId())) { - value = qv; - break; - } - } - target.setSampleCategoryValue(value); - } - - protected void removeAllChildrenBatchs(Integer batchId, List<SortingBatch> result) { - Iterator<Integer> list = queryListTyped("speciesBatchChildren", - "batchId", IntegerType.INSTANCE, batchId); - - // First, add childrens - while (list.hasNext()) { - - removeAllChildrenBatchs(list.next(), result); - } - - // Then add the given batch (after children, because of order need in "delete") - SortingBatch batch = sortingBatchDao.load(batchId); - //SortingBatch batch = (SortingBatch)getCurrentSession().get(SortingBatchImpl.class, batchId); - batch.getSortingMeasurements().clear(); - batch.getQuantificationMeasurements().clear(); - sortingBatchDao.remove(batch); - } - - protected void beanToEntity(SpeciesBatchFrequency source, SortingBatch target, SortingBatch parentBatch, short rankOrder, boolean copyIfNull) { - Preconditions.checkNotNull(source.getBatch()); - Preconditions.checkNotNull(source.getBatch().getId()); - - // Retrieve recorder department - // TODO BLA : prendre le service du 1er saisisseur ? - Integer recorderDepartmentId = enumeration.DEPARTMENT_ID_UNKNOWN_RECORDER_DEPARTMENT; - - // Create lists to store all updates, then remove not updated items - Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); - if (target.getQuantificationMeasurements() != null) { - notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); - } - Set<SortingMeasurement> notChangedSortingMeasurements = new HashSet<SortingMeasurement>(); - if (target.getSortingMeasurements() != null) { - notChangedSortingMeasurements.addAll(target.getSortingMeasurements()); - } - - // If parent and root need to be set - if (target.getId() == null - || target.getRootBatch() == null - || (target.getParentBatch() != null && !target.getParentBatch().getId().equals(parentBatch.getId()))) { - - target.setParentBatch(parentBatch); - target.setRootBatch(parentBatch.getRootBatch()); - } - - // RankOrder - target.setRankOrder(rankOrder); - - // Weight or SampleCategoryWeight - if (copyIfNull && source.getWeight() == null) { - // Nothing to do : will be removed later, using notChangedSortingMeasurements - } else if (source.getWeight() != null) { - QuantificationMeasurement quantificationMeasurement = measurementHelper.setQuantificationMeasurement(target, enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getWeight(), true); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } - - // Sorting measurement - if (copyIfNull && (source.getLengthStepCaracteristic() == null || source.getLengthStep() == null)) { - // Nothing to do : will be removed later, using notChangedSortingMeasurements - } else if (source.getLengthStepCaracteristic() != null && source.getLengthStep() != null) { - Integer pmfmId = Integer.valueOf(source.getLengthStepCaracteristic().getId()); - SortingMeasurement sortingMeasurement = measurementHelper.setSortingMeasurement(target, recorderDepartmentId, pmfmId, source.getLengthStep()); - notChangedSortingMeasurements.remove(sortingMeasurement); - } - - // Individual count - if (copyIfNull && source.getNumber() == null) { - target.setIndividualCount(null); - } else if (source.getNumber() != null) { - target.setIndividualCount(source.getNumber()); - } - - // Species - target.setReferenceTaxon(null); - - // QualityFlag - target.setQualityFlag(parentBatch.getQualityFlag()); - - // Comments - if (copyIfNull && source.getComment() == null) { - target.setComments(null); - } else if (source.getComment() != null) { - target.setComments(source.getComment()); - } - - // Removed not changed measurements (in sorting and quantification measurement lists) - if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { - for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { - target.getQuantificationMeasurements().remove(qm); - } - } - if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { - for (SortingMeasurement sm : notChangedSortingMeasurements) { - target.getSortingMeasurements().remove(sm); - } - } - } - - private SpeciesBatchFrequency loadSpeciesBatchFrequency(Object[] source, Map<String, List<SpeciesBatchFrequency>> batchFrequenciesMapByParentId) { - SpeciesBatchFrequency target = new SpeciesBatchFrequency(); - - int colIndex = 0; - target.setId(source[colIndex++].toString()); - - // Individual count - target.setNumber((Integer) source[colIndex++]); - - // Covert database weight (and sampling ratio) into UI weight - Float sourceWeight = (Float) source[colIndex++]; - Float sourceSamplingRatio = (Float) source[colIndex++]; - String sourceSamplingRatioText = (String) source[colIndex++]; - UIWeight uiWeight = convertDatabase2UI(sourceWeight, sourceSamplingRatio, sourceSamplingRatioText); - target.setWeight(uiWeight.weight); - - target.setComment((String) source[colIndex++]); - - // Length step category - Integer lengthPmfmId = (Integer) source[colIndex++]; - Caracteristic lengthStepCaracteristic = referentialService.getCaracteristic(lengthPmfmId); - target.setLengthStepCaracteristic(lengthStepCaracteristic); - - // Qualitative value (should be null) - Preconditions.checkState(source[colIndex++] == null, "Invalid batch tree format : batch frequency could not have a qualitative value."); - - // Length (skip qvValue and alphaValue column) - target.setLengthStep((Float) source[colIndex++]); - - // Alphanumerical value (should be null) - Preconditions.checkState(source[colIndex++] == null, "Invalid batch tree format : batch frequency could not have a alphanumerical value."); - - // Taxon (should be null) - Preconditions.checkState(source[colIndex++] == null, "Invalid batch tree format : taxon frequency could not have species."); - - Integer parentBatchId = (Integer) source[colIndex++]; - - // Add target into the result map - List<SpeciesBatchFrequency> parentBatchFrequencies = batchFrequenciesMapByParentId.get(parentBatchId.toString()); - if (parentBatchFrequencies == null) { - parentBatchFrequencies = Lists.newArrayList(); - batchFrequenciesMapByParentId.put(parentBatchId.toString(), parentBatchFrequencies); - } - parentBatchFrequencies.add(target); - - return target; - } - - protected boolean couldBeASpeciesBatchFrequency(Object[] source) { - Integer pmfmId = (Integer) source[6]; - Integer referenceTaxonId = (Integer) source[10]; - Float numericalValue = (Float) source[8]; - Integer parentbatchId = (Integer) source[11]; - SampleCategoryEnum sampleCategory = referentialService.getSampleCategoryByPmfmId(pmfmId); - - // Batch frequency is a batch with : - // - a numerical value - // - a parent - // - no species - // - no corresponding sample category - return numericalValue != null && parentbatchId != null && referenceTaxonId == null && sampleCategory == null; - } - - protected UIWeight convertDatabase2UI(Float weight, Float samplingRatio, String samplingRatioText) { - UIWeight result = new UIWeight(); - - // Weight & sampleCategory Weight - if (samplingRatio == null) { - result.sampleCategoryWeight = weight; - } else if (weight != null) { - String startStr = weight.toString().replace(',', '.') + "/"; - if (samplingRatioText != null && samplingRatioText.startsWith(startStr)) { - String weightStr = samplingRatioText.substring(startStr.length()); - if (weightStr != null && !weightStr.isEmpty()) { - result.sampleCategoryWeight = Float.parseFloat(weightStr); - result.weight = weight; - } - } - else { - result.sampleCategoryWeight = weight; - } - } - return result; - } - - static class UIWeight { - Float sampleCategoryWeight = null; - - Float weight = null; - } -} Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiEnumerationFile.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiEnumerationFile.java 2013-02-14 10:40:25 UTC (rev 412) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiEnumerationFile.java 2013-02-14 15:27:16 UTC (rev 413) @@ -188,6 +188,12 @@ @Value("${TaxonGroupTypeCode.COMMERCIAL_SPECIES}") public final String TAXON_GROUP_TYPE_ID_COMMERCIAL_SPECIES = null; + @Value("${ReferenceTaxonId.LIFE}") + public final Integer REFERENCE_TAXON_ID_LIFE = null; + + @Value("${ReferenceTaxonId.INERT}") + public final Integer REFERENCE_TAXON_ID_INERT = null; + public void init() { Field[] declaredFields = getClass().getDeclaredFields(); Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiPersistenceServiceLocator.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiPersistenceServiceLocator.java 2013-02-14 10:40:25 UTC (rev 412) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiPersistenceServiceLocator.java 2013-02-14 15:27:16 UTC (rev 413) @@ -80,13 +80,18 @@ FishingOperationPersistenceService.class); } + public static BatchPersistenceService getBatchPersistenceService() { + return getPersistenceService("batchPersistenceService", + BatchPersistenceService.class); + } + public static CatchBatchPersistenceService getCatchBatchPersistenceService() { - return getPersistenceService("catchBatchPersistenceService", - CatchBatchPersistenceService.class); + return getPersistenceService("batchPersistenceService", + CatchBatchPersistenceService.class); } public static SpeciesBatchPersistenceService getSpeciesBatchPersistenceService() { - return getPersistenceService("speciesBatchPersistenceService", + return getPersistenceService("batchPersistenceService", SpeciesBatchPersistenceService.class); } Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/measure/MeasurementPersistenceHelper.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/measure/MeasurementPersistenceHelper.java 2013-02-14 10:40:25 UTC (rev 412) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/measure/MeasurementPersistenceHelper.java 2013-02-14 15:27:16 UTC (rev 413) @@ -206,6 +206,19 @@ return sortingMeasurement; } + + public SortingMeasurement getInheritedSortingMeasurement( + SortingBatch sortingBatch, Integer pmfmId) { + if (sortingBatch.getInheritedSortingMeasurements() != null) { + for (SortingMeasurement qm : sortingBatch + .getInheritedSortingMeasurements()) { + if (pmfmId.equals(qm.getPmfm().getId())) { + return qm; + } + } + } + return null; + } public Integer sampleCategory2PmfmId(SampleCategoryEnum sampleCategory) { Integer pmfmId = null; Modified: trunk/tutti-persistence/src/main/resources/applicationContext-service-tutti.xml =================================================================== --- trunk/tutti-persistence/src/main/resources/applicationContext-service-tutti.xml 2013-02-14 10:40:25 UTC (rev 412) +++ trunk/tutti-persistence/src/main/resources/applicationContext-service-tutti.xml 2013-02-14 15:27:16 UTC (rev 413) @@ -53,8 +53,8 @@ <property name="diskExpiryThreadIntervalSeconds" value="300"/> </bean> - <bean id="tuttiPmfmsCache" parent="tuttiAbstractEternalCache"> - <property name="cacheName" value="pmfms" /> + <bean id="tuttiBatchTreeCache" parent="tuttiAbstractCache"> + <property name="cacheName" value="batchTree" /> </bean>  @@ -67,6 +67,10 @@ <property name="timeToIdle" value="0"/> </bean> + <bean id="tuttiPmfmsCache" parent="tuttiAbstractEternalCache"> + <property name="cacheName" value="pmfms" /> + </bean> + <bean id="tuttiFishingVesselsCache" parent="tuttiAbstractEternalCache"> <property name="cacheName" value="fishingVessels" /> </bean> Modified: trunk/tutti-persistence/src/main/resources/i18n/tutti-persistence_fr_FR.properties =================================================================== --- trunk/tutti-persistence/src/main/resources/i18n/tutti-persistence_fr_FR.properties 2013-02-14 10:40:25 UTC (rev 412) +++ trunk/tutti-persistence/src/main/resources/i18n/tutti-persistence_fr_FR.properties 2013-02-14 15:27:16 UTC (rev 413) @@ -12,4 +12,7 @@ tutti.option.persistence.jdbc.url.description=URL de connexion à la base de données tutti.option.persistence.jdbc.username.description=Login de l'utilisateur pour se connecter à la base de données tutti.option.persistence.protocol.directory.description=Répertoire où sont conservés les protocoles +tutti.persistence.batch.validation.onlyTaxonButPmfmFound=Batch [id\=%s] should not have any sorting measurement (should only have a reference taxon), but found pmfm [id\=%s]. +tutti.persistence.batch.validation.pmfmNotFound=Batch [id\=%s] should have a sorting measurement with a pmfm id in %s or a length pmfm, but found pmfm [id\=%s]. +tutti.persistence.batch.validation.referenceTaxonNotFound=Batch [id\=%s] should have a reference taxon. tutti.persistence.config=Configuration de la persistence de Tutti Modified: trunk/tutti-persistence/src/main/resources/queries-override.hbm.xml =================================================================== --- trunk/tutti-persistence/src/main/resources/queries-override.hbm.xml 2013-02-14 10:40:25 UTC (rev 412) +++ trunk/tutti-persistence/src/main/resources/queries-override.hbm.xml 2013-02-14 15:27:16 UTC (rev 413) @@ -310,77 +310,6 @@ <query-param name="pmfmIdSortingType" type="java.lang.Integer"/> </query> - <query name="allSpeciesBatch"> - <![CDATA[ - SELECT - b.id as batchId, - b.individualCount AS individualCount, - qm.numericalValue AS weight, - b.samplingRatio AS samplingRatio, - b.samplingRatioText AS samplingRatioText, - b.comments AS comments, - sm.pmfm.id AS pmfmId, - sm.qualitativeValue.id as qvValue, - sm.numericalValue AS numValue, - sm.alphanumericalValue AS alphaValue, - b.referenceTaxon.id as referenceTaxonId, - b.parentBatch.id as parentBatchId - FROM - SortingBatchImpl b - INNER JOIN b.rootBatch cb - LEFT OUTER JOIN b.sortingMeasurements sm - LEFT OUTER JOIN b.quantificationMeasurements qm - WHERE - cb.fishingOperation.id=:fishingOperationId - AND ( - qm is null - OR qm.isReferenceQuantification=true - ) - ORDER BY b.id - ]]> - <query-param name="fishingOperationId" type="java.lang.Integer"/> - </query> - - <query name="parentBatch"> - <![CDATA[ - SELECT - b2.id as parentBatchId, - cb.id as rootBatchId - FROM - CatchBatchImpl cb - INNER JOIN cb.childBatchs b1 - INNER JOIN b1.childBatchs b2, - SortingMeasurementImpl sm1, - SortingMeasurementImpl sm2 - WHERE - cb.fishingOperation.id = :fishingOperationId - AND sm1.sortingBatch.id=b1.id - AND sm1.pmfm.id=:pmfmIdSorted - AND sm1.qualitativeValue.id=:qualitativeIdSorted - AND sm2.sortingBatch.id=b2.id - AND sm2.pmfm.id=:pmfmIdSortingType - AND sm2.qualitativeValue.id=:qualitativeIdSortingType - ]]> - <query-param name="fishingOperationId" type="java.lang.Integer"/> - <query-param name="pmfmIdSorted" type="java.lang.Integer"/> - <query-param name="qualitativeIdSorted" type="java.lang.Integer"/> - <query-param name="pmfmIdSortingType" type="java.lang.Integer"/> - <query-param name="qualitativeIdSortingType" type="java.lang.Integer"/> - </query> - - <query name="speciesBatchChildren"> - <![CDATA[ - SELECT - cb.id - FROM - SortingBatchImpl b - INNER JOIN b.childBatchs cb - WHERE - b.id = :batchId - ]]> - <query-param name="batchId" type="java.lang.Integer"/> - </query> - <query name="updateBatchSpecies"> <![CDATA[ UPDATE SortingBatchImpl b @@ -815,16 +744,6 @@    - - <fetch-profile name="batch-with-measurements"> - <fetch entity="BatchImpl" association="quantificationMeasurements" style="join"/> - <fetch entity="CatchBatchImpl" association="quantificationMeasurements" style="join"/> - <fetch entity="SortingBatchImpl" association="sortingMeasurements" style="join"/> - <fetch entity="SortingBatchImpl" association="quantificationMeasurements" style="join"/> - </fetch-profile> - <fetch-profile name="batch-with-childs"> - <fetch entity="BatchImpl" association="childBatchs" style="join"/> - </fetch-profile> - + </hibernate-mapping> Modified: trunk/tutti-persistence/src/main/resources/tutti-db-conf.properties =================================================================== --- trunk/tutti-persistence/src/main/resources/tutti-db-conf.properties 2013-02-14 10:40:25 UTC (rev 412) +++ trunk/tutti-persistence/src/main/resources/tutti-db-conf.properties 2013-02-14 15:27:16 UTC (rev 413) @@ -46,4 +46,6 @@ hibernate.generate_statistics=false hibernate.query.substitutions=true 1, false 0 hibernate.hbm2ddl.auto=none -hibernate.default_batch_fetch_size=1 \ No newline at end of file +hibernate.default_batch_fetch_size=1 +adagio.cache.use_tree_cache=true +ehcache.disk.store.dir=c:/temp/ehcache \ No newline at end of file Modified: trunk/tutti-persistence/src/main/resources/tutti-db-enumerations.properties =================================================================== --- trunk/tutti-persistence/src/main/resources/tutti-db-enumerations.properties 2013-02-14 10:40:25 UTC (rev 412) +++ trunk/tutti-persistence/src/main/resources/tutti-db-enumerations.properties 2013-02-14 15:27:16 UTC (rev 413) @@ -375,4 +375,10 @@ DepartmentId.UNKNOWN_RECORDER_DEPARTMENT=181 #TODO A creer (dans les enumerations Allegro) -ProgramCode.SCIENTIFIC_CRUISE_PREFIX=CAM- \ No newline at end of file +ProgramCode.SCIENTIFIC_CRUISE_PREFIX=CAM- + +#Reference taxon correspondant à "Biota" (ou "Vie") +ReferenceTaxonId.LIFE=7637 +#Reference taxon correspondant à "Non Biota" (ou "Non Vie" - matière inerte) +# TODO : a creer dans la base harmonie et a�changer ! +ReferenceTaxonId.INERT=1 \ No newline at end of file Added: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceReadTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceReadTest.java (rev 0) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceReadTest.java 2013-02-14 15:27:16 UTC (rev 413) @@ -0,0 +1,187 @@ +package fr.ifremer.tutti.persistence.service; + +/* + * #%L + * Tutti :: Persistence API + * $Id: CatchBatchPersistenceServiceReadTest.java 379 2013-02-10 13:41:29Z tchemit $ + * $HeadURL: http://svn.forge.codelutin.com/svn/tutti/trunk/tutti-persistence/src/test/j… $ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import static org.junit.Assert.*; +import static org.junit.Assert.assertNull; +import static org.junit.Assert.assertTrue; + +import java.util.List; +import java.util.Map; + +import fr.ifremer.tutti.persistence.DatabaseResource; +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.SampleCategoryEnum; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; + +import org.junit.Before; +import org.junit.ClassRule; +import org.junit.Ignore; +import org.junit.Test; +import org.springframework.dao.DataRetrievalFailureException; + +import com.google.common.collect.Maps; + +/** + * To test {@link CatchBatchPersistenceService} for read operation. + * + * @author tchemit <chemit(a)codelutin.com> + * @since 1.0 + */ +public class BatchPersistenceServiceReadTest { + + @ClassRule + public static final DatabaseResource dbResource = DatabaseResource.readDb(); + + protected BatchPersistenceService service; + protected FishingOperationPersistenceService fishingOperationService; + protected FishingOperation fishingOperation; + + @Before + public void setUp() throws Exception { + service = TuttiPersistenceServiceLocator.getBatchPersistenceService(); + fishingOperationService = TuttiPersistenceServiceLocator.getFishingOperationPersistenceService(); + + List<FishingOperation> fishingOperations = fishingOperationService.getAllFishingOperation(dbResource.getFixtures().cruiseId()); + assertNotNull(fishingOperations); + assertTrue(fishingOperations.size() > 0); + fishingOperation = fishingOperations.get(0); + assertNotNull(fishingOperation); + assertNotNull(fishingOperation.getId()); + } + + @Test + public void getCatchBatchFromFishingOperation() throws Exception { + + try { + CatchBatch catchBatch = service.getCatchBatchFromFishingOperation(fishingOperation.getId()); + fail("batch tree must be invalid (old CGFS tree structure), for fishing operation id=" + fishingOperation.getId()); + } + catch(DataRetrievalFailureException drfe) { + // success + } + } + + @Test + public void getAllRootSpeciesBatch(/*String fishingOperationId*/) { + } + + @Test + public void getAllSpeciesBatchFrequency(/*String speciesBatchId*/) { + + } + + public static void assertSpeciesBatch(SpeciesBatch expectedBatch, SpeciesBatch actualBatch, boolean assertIdEquals) { + assertNotNull(actualBatch); + assertNotNull(actualBatch.getId()); + if (assertIdEquals && expectedBatch.getId() != null) { + assertEquals(expectedBatch.getId(), actualBatch.getId()); + } + assertEquals(expectedBatch.getWeight(), actualBatch.getWeight()); + assertEquals(expectedBatch.getSampleCategoryType(), actualBatch.getSampleCategoryType()); + if (expectedBatch.getSampleCategoryValue() != null && expectedBatch.getSampleCategoryValue() instanceof CaracteristicQualitativeValue) { + assertNotNull("Bad sampleCategoryValue : expected <" + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId() + "> but was <null>", + actualBatch.getSampleCategoryValue()); + assertEquals( + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId(), + ((CaracteristicQualitativeValue) actualBatch.getSampleCategoryValue()).getId()); + } else { + assertEquals(expectedBatch.getSampleCategoryValue(), actualBatch.getSampleCategoryValue()); + } + assertEquals(expectedBatch.getSampleCategoryWeight(), actualBatch.getSampleCategoryWeight()); + assertEquals(expectedBatch.getNumber(), actualBatch.getNumber()); + assertEquals(expectedBatch.getComment(), actualBatch.getComment()); + + // Check species only if Vrac/HorsVrac or if batch has been load throw getAllxxx method + // (Because getSpeciesBatch(id) could not always retrieve the species) + if (expectedBatch.getSpecies() != null && ( + expectedBatch.getSampleCategoryType() == SampleCategoryEnum.sortedUnsorted + || actualBatch.getSpecies() != null)) { + assertNotNull(actualBatch.getSpecies()); + assertEquals(expectedBatch.getSpecies().getId(), actualBatch.getSpecies().getId()); + } + } + + public static void assertBatchFrequencies(List<SpeciesBatchFrequency> expectedFrequencies, List<SpeciesBatchFrequency> actualFrequencies, boolean assertIdEquals) { + assertNotNull(actualFrequencies); + assertEquals(expectedFrequencies.size(), actualFrequencies.size()); + + // Store actual batches into a map, using the length as key + Map<Float, SpeciesBatchFrequency> expectedLengthMap = Maps.newHashMap(); + for (SpeciesBatchFrequency speciesBatchFrequency : expectedFrequencies) { + expectedLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); + } + + // Store expected batches into a map, using the length as key + Map<Float, SpeciesBatchFrequency> actualLengthMap = Maps.newHashMap(); + for (SpeciesBatchFrequency speciesBatchFrequency : actualFrequencies) { + assertFalse("Duplicate lengthStep found in batchFrequencies, for length=" + speciesBatchFrequency.getLengthStep(), actualLengthMap.containsKey(speciesBatchFrequency.getLengthStep())); + actualLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); + assertNotNull(speciesBatchFrequency.getId()); + } + + for (Float lengthStep : expectedLengthMap.keySet()) { + SpeciesBatchFrequency expectedBatchFrequency = expectedLengthMap.get(lengthStep); + SpeciesBatchFrequency actualBatchFrequency = actualLengthMap.get(lengthStep); + if (assertIdEquals) { + assertEquals(expectedBatchFrequency.getId(), actualBatchFrequency.getId()); + } + assertNotNull(expectedBatchFrequency.getLengthStepCaracteristic()); + assertEquals(expectedBatchFrequency.getLengthStepCaracteristic().getId(), actualBatchFrequency.getLengthStepCaracteristic().getId()); + assertEquals(expectedBatchFrequency.getNumber(), actualBatchFrequency.getNumber()); + assertEquals(expectedBatchFrequency.getWeight(), actualBatchFrequency.getWeight()); + assertEquals(expectedBatchFrequency.getComment(), actualBatchFrequency.getComment()); + //assertNotNull(expectedBatchFrequency.getBatch()); + //assertEquals(expectedBatchFrequency.getBatch().getId(), actualBatchFrequency.getBatch().getId()); + } + } + + public static SpeciesBatch getSpeciesBatch(String fishingOperationId, String speciesBatchId) { + return getSpeciesBatch(speciesBatchId, TuttiPersistenceServiceLocator.getBatchPersistenceService().getAllRootSpeciesBatch(fishingOperationId)); + } + + public static SpeciesBatch getSpeciesBatch(String speciesBatchId, List<SpeciesBatch> speciesBatchs) { + if (speciesBatchs == null) { + return null; + } + for (SpeciesBatch speciesBatch : speciesBatchs) { + if (speciesBatchId.equals(speciesBatch.getId())) { + return speciesBatch; + } + if (speciesBatch.getChildBatchs() != null) { + speciesBatch = getSpeciesBatch(speciesBatchId, speciesBatch.getChildBatchs()); + if (speciesBatch != null) { + return speciesBatch; + } + } + } + return null; + } + +} Added: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceWriteTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceWriteTest.java (rev 0) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceWriteTest.java 2013-02-14 15:27:16 UTC (rev 413) @@ -0,0 +1,621 @@ +package fr.ifremer.tutti.persistence.service; + +/* + * #%L + * Tutti :: Persistence API + * $Id: CatchBatchPersistenceServiceWriteTest.java 379 2013-02-10 13:41:29Z tchemit $ + * $HeadURL: http://svn.forge.codelutin.com/svn/tutti/trunk/tutti-persistence/src/test/j… $ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.DatabaseResource; +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.SampleCategoryEnum; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicType; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import org.junit.Before; +import org.junit.ClassRule; +import org.junit.Ignore; +import org.junit.Test; +import org.springframework.dao.DataRetrievalFailureException; + +import com.google.common.collect.Lists; +import com.google.common.collect.Maps; + +import java.util.Calendar; +import java.util.Date; +import java.util.GregorianCalendar; +import java.util.List; +import java.util.Map; + +import static org.junit.Assert.assertEquals; +import static org.junit.Assert.assertNotNull; +import static org.junit.Assert.*; + +/** + * To test {@link CatchBatchPersistenceService} for write operation. + * + * @author tchemit <chemit(a)codelutin.com> + * @since 1.0 + */ +public class BatchPersistenceServiceWriteTest { + + @ClassRule + public static final DatabaseResource dbResource = DatabaseResource.writeDb(); + + protected BatchPersistenceService service; + + protected CruisePersistenceService cruiseService; + + protected FishingOperationPersistenceService fishingOperationService; + + protected CatchBatchPersistenceService catchBatchService; + + protected ReferentialPersistenceService referentialService; + + protected Cruise cruise; + + protected FishingOperation fishingOperationNoCatchBatch; + + protected FishingOperation fishingOperationWithEmptyBatch; + + protected CatchBatch catchBacth; + + protected List<Species> species; + + protected Caracteristic sortedUnsortedPMFM; + + protected CaracteristicQualitativeValue horsVracQualitativeValue; + + protected CaracteristicQualitativeValue vracQualitativeValue; + + protected Caracteristic maturityPMFM; + + protected CaracteristicQualitativeValue firstMaturityQualitativeValue; + + protected Caracteristic sexPMFM; + + protected CaracteristicQualitativeValue maleQualitativeValue; + + protected CaracteristicQualitativeValue femaleQualitativeValue; + + protected CaracteristicQualitativeValue unkQualitativeValue; + + protected Caracteristic frequencyPMFM; + + @Before + public void setUp() throws Exception { + service = TuttiPersistenceServiceLocator.getBatchPersistenceService(); + cruiseService = TuttiPersistenceServiceLocator.getCruisePersistenceService(); + fishingOperationService = TuttiPersistenceServiceLocator.getFishingOperationPersistenceService(); + catchBatchService = TuttiPersistenceServiceLocator.getCatchBatchPersistenceService(); + referentialService = TuttiPersistenceServiceLocator.getReferentialPersistenceService(); + + species = referentialService.getAllSpecies(); + assertNotNull(species); + assertTrue(species.size() > 2); + + cruise = cruiseService.getCruise(dbResource.getFixtures().cruiseId()); + cruise.setId(null); + Calendar calendar = new GregorianCalendar(); + cruise.setBeginDate(calendar.getTime()); + cruise.setYear(calendar.get(Calendar.YEAR)); + calendar.add(Calendar.MONTH, 1); // add one month + cruise.setEndDate(calendar.getTime()); + cruise = cruiseService.createCruise(cruise); + + // Create a first operation, with no cacth batch : to test CatchBatch insert/update : + List<FishingOperation> fishingOperations = fishingOperationService.getAllFishingOperation(dbResource.getFixtures().cruiseId()); + assertNotNull(fishingOperations); + assertTrue(fishingOperations.size() > 0); + fishingOperationNoCatchBatch = fishingOperations.get(0); + fishingOperationNoCatchBatch = fishingOperationService.getFishingOperation(fishingOperationNoCatchBatch.getId()); + fishingOperationNoCatchBatch.setId(null); + fishingOperationNoCatchBatch.setCruise(cruise); + calendar.setTime(new Date()); + calendar.set(Calendar.HOUR_OF_DAY, 1); + calendar.set(Calendar.MILLISECOND, 0); + fishingOperationNoCatchBatch.setGearShootingStartDate(calendar.getTime()); + calendar.setTime(new Date()); + calendar.set(Calendar.HOUR_OF_DAY, 10); + calendar.set(Calendar.MILLISECOND, 0); + fishingOperationNoCatchBatch.setGearShootingEndDate(calendar.getTime()); + fishingOperationNoCatchBatch = fishingOperationService.createFishingOperation(fishingOperationNoCatchBatch); + + // Create a second operation, with no cacth batch : to test CatchBatch insert/update : + fishingOperationWithEmptyBatch = fishingOperations.get(1); + fishingOperationWithEmptyBatch = fishingOperationService.getFishingOperation(fishingOperationWithEmptyBatch.getId()); + fishingOperationWithEmptyBatch.setId(null); + fishingOperationWithEmptyBatch.setCruise(cruise); + calendar.setTime(new Date()); + calendar.set(Calendar.HOUR_OF_DAY, 11); + calendar.set(Calendar.MILLISECOND, 0); + fishingOperationWithEmptyBatch.setGearShootingStartDate(calendar.getTime()); + calendar.setTime(new Date()); + calendar.set(Calendar.HOUR_OF_DAY, 12); + calendar.set(Calendar.MILLISECOND, 0); + fishingOperationWithEmptyBatch.setGearShootingEndDate(calendar.getTime()); + fishingOperationWithEmptyBatch = fishingOperationService.createFishingOperation(fishingOperationWithEmptyBatch); + + catchBacth = new CatchBatch(); + catchBacth.setFishingOperation(fishingOperationWithEmptyBatch); + catchBacth = catchBatchService.createCatchBatch(catchBacth); + + sortedUnsortedPMFM = referentialService.getSortedUnsortedCaracteristic(); + horsVracQualitativeValue = sortedUnsortedPMFM.getQualitativeValue(0); + vracQualitativeValue = sortedUnsortedPMFM.getQualitativeValue(1); + maturityPMFM = referentialService.getMaturityCaracteristic(); + firstMaturityQualitativeValue = maturityPMFM.getQualitativeValue(0); + sexPMFM = referentialService.getSexCaracteristic(); + maleQualitativeValue = sexPMFM.getQualitativeValue(1); + femaleQualitativeValue = sexPMFM.getQualitativeValue(2); + unkQualitativeValue = sexPMFM.getQualitativeValue(3); + + List<Caracteristic> cara = referentialService.getAllCaracteristic(); + for (Caracteristic caracteristic : cara) { + if (caracteristic.getCaracteristicType() == CaracteristicType.NUMBER + && caracteristic.getPrecision() != null + && caracteristic.getPrecision() == 0.5f) { + frequencyPMFM = caracteristic; + break; + } + } + assertNotNull("no numerical PMFM with a precision has been found. Could not define a PMFM for batch frequencies.", frequencyPMFM); + + } + + @Test + public void createAndSaveCatchBatch() throws Exception { + CatchBatch catchBatch; + + catchBatch = new CatchBatch(); + catchBatch.setFishingOperation(fishingOperationNoCatchBatch); + + // ----------------------------------------------------------------------------- + // 1. Test with only mandatory properties + // ----------------------------------------------------------------------------- + + // Create and reload (test round trip) + assertCreateAndReloadCatchBatch(catchBatch, fishingOperationNoCatchBatch.getId()); + + // ----------------------------------------------------------------------------- + // 2. Test with all properties + // ----------------------------------------------------------------------------- + catchBatch.setId(null); + // total weight : 100kg + catchBatch.setCatchTotalWeight(75f); + // Vrac : + { + // note : poids trie par la balance tremis (thalassa) (init par pupitri) + catchBatch.setCatchTotalSortedTremisWeight(50f); + // note : poids vrac caroussel (thalassa) (init par pupitri) (vrac trie) ou bien "poids trié fournie par la table de tri (Sum(Si) + catchBatch.setCatchTotalSortedCarousselWeight(45f); + + // Species + { + catchBatch.setSpeciesTotalSortedWeight(12f); + catchBatch.setSpeciesTotalSampleSortedWeight(8f); + catchBatch.setSpeciesTotalLivingNotItemizedWeight(0.2f); + catchBatch.setSpeciesTotalInertWeight(0.1f); + } + } + // Hors Vrac : 10kg + { + catchBatch.setCatchTotalUnsortedWeight(10f); + + // Species + { + catchBatch.setSpeciesTotalUnsortedWeight(10f); + } + } + // Rejet : 15kg + catchBatch.setCatchTotalRejectedWeight(15f); + + // Create and reload (test round trip) + assertCreateAndReloadCatchBatch(catchBatch, fishingOperationNoCatchBatch.getId()); + + // ----------------------------------------------------------------------------- + // 2. Test save after modification + // ----------------------------------------------------------------------------- + catchBatch.setCatchTotalSortedTremisWeight(null); + catchBatch.setCatchTotalSortedCarousselWeight(null); + catchBatch.setSpeciesTotalSortedWeight(null); + catchBatch.setSpeciesTotalSampleSortedWeight(null); + catchBatch.setCatchTotalUnsortedWeight(null); + catchBatch.setSpeciesTotalUnsortedWeight(null); + + assertSaveAndReloadCatchBatch(catchBatch, fishingOperationNoCatchBatch.getId()); + } + + @Test + public void createAndSaveSpeciesBatchAndFrequencies() { + SpeciesBatch esp1Batch = null; + SpeciesBatch esp2Batch = null; + SpeciesBatch frequenciesParentBatch = null; + SpeciesBatch batch = null; + Species taxon1 = species.get(0); + Species taxon2 = species.get(1); + + // ----------------------------------------------------------------------------- + // 1. Test with only mandatory properties + // ----------------------------------------------------------------------------- + // batch : "ESP1 - Vrac/5" + batch = new SpeciesBatch(); + batch.setParentBatch(null); + batch.setFishingOperation(fishingOperationNoCatchBatch); + batch.setSpecies(taxon1); + batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); + batch.setSampleCategoryValue(vracQualitativeValue); + batch.setSampleCategoryWeight(5f); + + assertCreateAndReloadSpeciesBatch(batch, null); + + // Save ESP1 batch + esp1Batch = batch; + + // ----------------------------------------------------------------------------- + // 2. Test child "Male/2" + // ----------------------------------------------------------------------------- + // Batch : ESP1 - Vrac/5 Male/2 ss-ech/1 Nombre/7 + batch = new SpeciesBatch(); + batch.setId(null); + batch.setParentBatch(esp1Batch); + batch.setSpecies(taxon1); + batch.setComment("ESP1 - Vrac/5 Male/2 ss-ech/1 Nombre/7"); + batch.setSampleCategoryType(SampleCategoryEnum.sex); + batch.setSampleCategoryValue(maleQualitativeValue); + batch.setSampleCategoryWeight(2f); + batch.setWeight(1f); + batch.setNumber(7); + + assertCreateAndReloadSpeciesBatch(batch, batch.getParentBatch().getId()); + + // ----------------------------------------------------------------------------- + // 3. Test child "Female/2" + // ----------------------------------------------------------------------------- + // Batch : ESP1 - Vrac/5 Female/3 Nombre/14 + batch = new SpeciesBatch(); + batch.setId(null); + batch.setParentBatch(esp1Batch); + batch.setSpecies(taxon1); + batch.setComment("ESP1 - Vrac/5 Female/3 Nombre/14"); + batch.setSampleCategoryType(SampleCategoryEnum.sex); + batch.setSampleCategoryValue(femaleQualitativeValue); + batch.setSampleCategoryWeight(3f); + batch.setWeight(null); + batch.setNumber(14); + + assertCreateAndReloadSpeciesBatch(batch, batch.getParentBatch().getId()); + + // ----------------------------------------------------------------------------- + // 4. Test : ESP2 - Vrac/7 + // \- ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11 + // ----------------------------------------------------------------------------- + // batch : "ESP2 - Vrac/7 " + batch = new SpeciesBatch(); + batch.setParentBatch(null); + batch.setSpecies(taxon2); + batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); + batch.setSampleCategoryValue(vracQualitativeValue); + batch.setSampleCategoryWeight(7f); + + assertCreateAndReloadSpeciesBatch(batch, null); + esp2Batch = batch; + + // Batch : ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11 + batch = new SpeciesBatch(); + batch.setId(null); + batch.setParentBatch(esp2Batch); + batch.setSpecies(taxon2); + batch.setComment("ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11"); + batch.setSampleCategoryType(SampleCategoryEnum.maturity); + batch.setSampleCategoryValue(firstMaturityQualitativeValue); + batch.setSampleCategoryWeight(2f); + batch.setWeight(1f); + batch.setNumber(11); + + assertCreateAndReloadSpeciesBatch(batch, batch.getParentBatch().getId()); + + // ----------------------------------------------------------------------------- + // 5. Test save after modifications + // ----------------------------------------------------------------------------- + // Batch : ESP2 - Vrac/7 UNK/1.75 ss-ech/1.11 Nombre/99 + batch.setComment("ESP2 - Vrac/7 UNK/1.75 ss-ech/1.11 Nombre/99"); + batch.setSampleCategoryType(SampleCategoryEnum.sex); + batch.setSampleCategoryValue(unkQualitativeValue); + batch.setSampleCategoryWeight(1.75f); + batch.setWeight(1.11f); + batch.setFishingOperation(fishingOperationWithEmptyBatch); + batch.setNumber(99); + + // Save and reload, then check + SpeciesBatch savedBatch = service.saveSpeciesBatch(batch); + assertSpeciesBatch(savedBatch, batch, false); + SpeciesBatch reloadedBatch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), savedBatch.getId()); + assertSpeciesBatch(savedBatch, reloadedBatch, true); + + // Save batch for later + frequenciesParentBatch = batch; + + // ----------------------------------------------------------------------------- + // 6. Test change species + // ----------------------------------------------------------------------------- + esp2Batch.setSpecies(taxon1); + service.changeSpeciesBatchSpecies(esp2Batch.getId(), taxon1); + assertSpeciesBatch(savedBatch, batch, false); + reloadedBatch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), esp2Batch.getId()); + assertSpeciesBatch(esp2Batch, reloadedBatch, true); + + // ----------------------------------------------------------------------------- + // 7. Test get all root species + // ----------------------------------------------------------------------------- + List<SpeciesBatch> rootSpeciesBatch = service.getAllRootSpeciesBatch(fishingOperationWithEmptyBatch.getId()); + assertNotNull(rootSpeciesBatch); + assertEquals(2, rootSpeciesBatch.size()); + assertNotNull(rootSpeciesBatch.get(0).getChildBatchs()); + assertTrue(rootSpeciesBatch.get(0).getChildBatchs().size() > 0); + assertNotNull(rootSpeciesBatch.get(1).getChildBatchs()); + assertTrue(rootSpeciesBatch.get(1).getChildBatchs().size() > 0); + + // ----------------------------------------------------------------------------- + // 8. Test batch frequency creation + // ----------------------------------------------------------------------------- + + List<SpeciesBatchFrequency> frequencies = Lists.newArrayList(); + float lengthStep = 0.5f; + for (float length = lengthStep; length < lengthStep * 20; length += lengthStep) { + SpeciesBatchFrequency frequency = new SpeciesBatchFrequency(); + frequency.setLengthStep(length); + frequency.setNumber((int) (length * 2)); + frequency.setWeight(0.01f * length * 2); + frequency.setLengthStepCaracteristic(frequencyPMFM); + frequency.setBatch(frequenciesParentBatch); + frequency.setComment("comments"); + frequencies.add(frequency); + } + List<SpeciesBatchFrequency> createdFrequencies = assertCreateAndReloadSpeciesBatchFrequency(frequencies, frequenciesParentBatch.getId()); + + // ----------------------------------------------------------------------------- + // 9. Test batch frequency update + // ----------------------------------------------------------------------------- + // Update some batchs (1cm, 2cm, etc) + for (SpeciesBatchFrequency speciesBatchFrequency : createdFrequencies) { + float length = speciesBatchFrequency.getLengthStep(); + if ((float) (int) length == length) { + speciesBatchFrequency.setNumber(12); + speciesBatchFrequency.setComment(null); + } + } + // And remove the last item (should be deleted in DB) + createdFrequencies.remove(createdFrequencies.size()-1); + List<SpeciesBatchFrequency> savedFrequencies = service.saveSpeciesBatchFrequency(frequenciesParentBatch.getId(), frequencies); + assertBatchFrequencies(createdFrequencies, savedFrequencies, true); + } + + @Test + public void deleteSpeciesBatch(/*String id*/) { + SpeciesBatch esp1Batch; + SpeciesBatch batch; + Species taxon1 = species.get(0); + + // ----------------------------------------------------------------------------- + // 1. Create two batchs (parent + child), then remove the parent batch + // ----------------------------------------------------------------------------- + // batch : ESP1 Vrac/5 + batch = new SpeciesBatch(); + batch.setParentBatch(null); + batch.setFishingOperation(fishingOperationWithEmptyBatch); + batch.setSpecies(taxon1); + batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); + batch.setSampleCategoryValue(vracQualitativeValue); + batch.setSampleCategoryWeight(5f); + assertCreateAndReloadSpeciesBatch(batch, null); + esp1Batch = batch; + + // batch : ESP1 Vrac/5 Male/2 + batch = new SpeciesBatch(); + batch.setParentBatch(esp1Batch); + batch.setFishingOperation(fishingOperationWithEmptyBatch); + batch.setSpecies(taxon1); + batch.setSampleCategoryType(SampleCategoryEnum.sex); + batch.setSampleCategoryValue(maleQualitativeValue); + batch.setSampleCategoryWeight(2f); + assertCreateAndReloadSpeciesBatch(batch, esp1Batch.getId()); + + // Try to remove + service.deleteSpeciesBatch(esp1Batch.getId()); + + // Check if remove + try { + batch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), esp1Batch.getId()); + assertNull(batch); + } catch (DataRetrievalFailureException drfe) { + assertNotNull(drfe); + } + } + + protected void assertCreateAndReloadSpeciesBatch(SpeciesBatch batch, String parentBatchId) { + batch.setFishingOperation(fishingOperationWithEmptyBatch); + + // Create batch + SpeciesBatch createdBatch = service.createSpeciesBatch(batch, parentBatchId); + assertSpeciesBatch(batch, createdBatch, false); + + // then reload (for round trip check) + SpeciesBatch reloadedBatch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), createdBatch.getId()); + if (parentBatchId == null) { + assertNull(reloadedBatch.getParentBatch()); + } else { + assertNotNull(reloadedBatch.getParentBatch()); + assertEquals(parentBatchId, reloadedBatch.getParentBatch().getId()); + } + assertSpeciesBatch(createdBatch, reloadedBatch, false); + + batch.setId(createdBatch.getId()); + } + + protected void assertCreateAndReloadCatchBatch(CatchBatch catchBatch, String fishingOperationId) { + CatchBatch createdCatchBatch = service.createCatchBatch(catchBatch); + assertNotNull(createdCatchBatch); + assertNotNull(createdCatchBatch.getId()); + assertCatchBatch(catchBatch, createdCatchBatch, false); + + CatchBatch reloadedCatchBatch = service.getCatchBatchFromFishingOperation(fishingOperationId); + assertCatchBatch(createdCatchBatch, reloadedCatchBatch, true); + + catchBatch.setId(createdCatchBatch.getId()); + } + + protected void assertSaveAndReloadCatchBatch(CatchBatch catchBatch, String fishingOperationId) { + CatchBatch savedCatchBatch = service.saveCatchBatch(catchBatch); + assertNotNull(savedCatchBatch); + assertNotNull(savedCatchBatch.getId()); + assertCatchBatch(catchBatch, savedCatchBatch, false); + + CatchBatch reloadedCatchBatch = service.getCatchBatchFromFishingOperation(fishingOperationId); + assertCatchBatch(savedCatchBatch, reloadedCatchBatch, true); + } + + protected void assertCatchBatch(CatchBatch expectedCatchBatch,CatchBatch actualCatchBatch, boolean assertIdEquals) { + if (expectedCatchBatch == null) { + assertNull(actualCatchBatch); + return; + } + + assertNotNull(actualCatchBatch); + if (assertIdEquals) { + assertEquals(expectedCatchBatch.getId(), actualCatchBatch.getId()); + } + assertEquals(expectedCatchBatch.getCatchTotalWeight(), actualCatchBatch.getCatchTotalWeight()); + assertEquals(expectedCatchBatch.getCatchTotalSortedCarousselWeight(), actualCatchBatch.getCatchTotalSortedCarousselWeight()); + assertEquals(expectedCatchBatch.getCatchTotalSortedTremisWeight(), actualCatchBatch.getCatchTotalSortedTremisWeight()); + assertEquals(expectedCatchBatch.getCatchTotalUnsortedWeight(), actualCatchBatch.getCatchTotalUnsortedWeight()); + + assertEquals(expectedCatchBatch.getSpeciesTotalSampleSortedWeight(), actualCatchBatch.getSpeciesTotalSampleSortedWeight()); + assertEquals(expectedCatchBatch.getSpeciesTotalSortedWeight(), actualCatchBatch.getSpeciesTotalSortedWeight()); + assertEquals(expectedCatchBatch.getSpeciesTotalUnsortedWeight(), actualCatchBatch.getSpeciesTotalUnsortedWeight()); + assertEquals(expectedCatchBatch.getSpeciesTotalInertWeight(), actualCatchBatch.getSpeciesTotalInertWeight()); + assertEquals(expectedCatchBatch.getSpeciesTotalLivingNotItemizedWeight(), actualCatchBatch.getSpeciesTotalLivingNotItemizedWeight()); + } + + protected void assertSpeciesBatch(SpeciesBatch expectedBatch, SpeciesBatch actualBatch, boolean assertIdEquals) { + assertNotNull(actualBatch); + assertNotNull(actualBatch.getId()); + if (assertIdEquals && expectedBatch.getId() != null) { + assertEquals(expectedBatch.getId(), actualBatch.getId()); + } + assertEquals(expectedBatch.getWeight(), actualBatch.getWeight()); + assertEquals(expectedBatch.getSampleCategoryType(), actualBatch.getSampleCategoryType()); + if (expectedBatch.getSampleCategoryValue() != null && expectedBatch.getSampleCategoryValue() instanceof CaracteristicQualitativeValue) { + assertNotNull("Bad sampleCategoryValue : expected <" + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId() + "> but was <null>", + actualBatch.getSampleCategoryValue()); + assertEquals( + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId(), + ((CaracteristicQualitativeValue) actualBatch.getSampleCategoryValue()).getId()); + } else { + assertEquals(expectedBatch.getSampleCategoryValue(), actualBatch.getSampleCategoryValue()); + } + assertEquals(expectedBatch.getSampleCategoryWeight(), actualBatch.getSampleCategoryWeight()); + assertEquals(expectedBatch.getNumber(), actualBatch.getNumber()); + assertEquals(expectedBatch.getComment(), actualBatch.getComment()); + + // Check species only if Vrac/HorsVrac or if batch has been load throw getAllxxx method + // (Because getSpeciesBatch(id) could not always retrieve the species) + if (expectedBatch.getSpecies() != null && ( + expectedBatch.getSampleCategoryType() == SampleCategoryEnum.sortedUnsorted + || actualBatch.getSpecies() != null)) { + assertNotNull(actualBatch.getSpecies()); + assertEquals(expectedBatch.getSpecies().getId(), actualBatch.getSpecies().getId()); + } + } + protected List<SpeciesBatchFrequency> assertCreateAndReloadSpeciesBatchFrequency(List<SpeciesBatchFrequency> frequencies, String parentBatchId) { + + // Create batch + List<SpeciesBatchFrequency> createdFrequencies = service.saveSpeciesBatchFrequency(parentBatchId, frequencies); + assertBatchFrequencies(frequencies, createdFrequencies, false); + + // then reload (for round trip check) + List<SpeciesBatchFrequency> reloadedFrequencies = service.getAllSpeciesBatchFrequency(parentBatchId); + assertBatchFrequencies(createdFrequencies, reloadedFrequencies, true); + + return createdFrequencies; + } + + protected void assertBatchFrequencies(List<SpeciesBatchFrequency> expectedFrequencies, List<SpeciesBatchFrequency> actualFrequencies, boolean assertIdEquals) { + assertNotNull(actualFrequencies); + assertEquals(expectedFrequencies.size(), actualFrequencies.size()); + + // Store actual batches into a map, using the length as key + Map<Float, SpeciesBatchFrequency> expectedLengthMap = Maps.newHashMap(); + for (SpeciesBatchFrequency speciesBatchFrequency : expectedFrequencies) { + expectedLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); + } + + // Store expected batches into a map, using the length as key + Map<Float, SpeciesBatchFrequency> actualLengthMap = Maps.newHashMap(); + for (SpeciesBatchFrequency speciesBatchFrequency : actualFrequencies) { + assertFalse("Duplicate lengthStep found in batchFrequencies, for length=" + speciesBatchFrequency.getLengthStep(), actualLengthMap.containsKey(speciesBatchFrequency.getLengthStep())); + actualLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); + assertNotNull(speciesBatchFrequency.getId()); + } + + for (Float lengthStep : expectedLengthMap.keySet()) { + SpeciesBatchFrequency expectedBatchFrequency = expectedLengthMap.get(lengthStep); + SpeciesBatchFrequency actualBatchFrequency = actualLengthMap.get(lengthStep); + if (assertIdEquals) { + assertEquals(expectedBatchFrequency.getId(), actualBatchFrequency.getId()); + } + assertNotNull(expectedBatchFrequency.getLengthStepCaracteristic()); + assertEquals(expectedBatchFrequency.getLengthStepCaracteristic().getId(), actualBatchFrequency.getLengthStepCaracteristic().getId()); + assertEquals(expectedBatchFrequency.getNumber(), actualBatchFrequency.getNumber()); + assertEquals(expectedBatchFrequency.getWeight(), actualBatchFrequency.getWeight()); + assertEquals(expectedBatchFrequency.getComment(), actualBatchFrequency.getComment()); + //assertNotNull(expectedBatchFrequency.getBatch()); + //assertEquals(expectedBatchFrequency.getBatch().getId(), actualBatchFrequency.getBatch().getId()); + } + } + + protected SpeciesBatch getSpeciesBatch(String fishingOperationId, String speciesBatchId) { + return getSpeciesBatch(speciesBatchId, service.getAllRootSpeciesBatch(fishingOperationId)); + } + + protected SpeciesBatch getSpeciesBatch(String speciesBatchId, List<SpeciesBatch> speciesBatchs) { + if (speciesBatchs == null) { + return null; + } + for (SpeciesBatch speciesBatch : speciesBatchs) { + if (speciesBatchId.equals(speciesBatch.getId())) { + return speciesBatch; + } + if (speciesBatch.getChildBatchs() != null) { + speciesBatch = getSpeciesBatch(speciesBatchId, speciesBatch.getChildBatchs()); + if (speciesBatch != null) { + return speciesBatch; + } + } + } + return null; + } +}

1 0

r412 - trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro
by tchemit＠users.forge.codelutin.com Feb. 14, 2013

Feb. 14, 2013

Author: tchemit Date: 2013-02-14 11:40:25 +0100 (Thu, 14 Feb 2013) New Revision: 412 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/412 Log: improve synchro model Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeHelper.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeResult.java Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeHelper.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeHelper.java 2013-02-14 08:42:09 UTC (rev 411) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeHelper.java 2013-02-14 10:40:25 UTC (rev 412) @@ -28,7 +28,7 @@ import com.google.common.collect.Lists; import com.google.common.collect.Sets; import fr.ifremer.tutti.persistence.entities.TuttiEntities; -import org.apache.commons.lang.time.DateUtils; +import org.apache.commons.lang3.time.DateUtils; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; import org.hibernate.dialect.Dialect; @@ -121,6 +121,28 @@ if (result.isSuccess()) { + // prepare model (compute update date, count rows to update,...) + + for (TuttiTable tuttiTable : TuttiTable.values()) { + + String tableName = tuttiTable.name(); + + TuttiTableMetadata table = remoteMeta.getTable(tableName); + + if (log.isDebugEnabled()) { + log.debug("Prepare table: " + tableName); + } + prepareTable(table, + localConnection, + remoteConnection, + result); + } + + long totalRows = result.getTotalRows(); + if (log.isInfoEnabled()) { + log.info("Total rows to update: " + totalRows); + } + // prepare target (desactivate constraints) prepareSynch(localConnection); @@ -140,6 +162,14 @@ remoteConnection, result); } + if (log.isInfoEnabled()) { + long totalInserts = result.getTotalInserts(); + long totalUpdates = result.getTotalUpdates(); + log.info("Total rows to treat: " + totalRows); + log.info("Total rows inserted: " + totalInserts); + log.info("Total rows updated: " + totalUpdates); + log.info("Total rows treated: " + (totalInserts + totalUpdates)); + } } finally { releaseSynch(localConnection); } @@ -231,9 +261,9 @@ * if table does not use a updateDate columns or if there * is no data in table. */ - public Date getLastUpdateDate(Connection connection, - TuttiTableMetadata table) throws SQLException { - Date result = null; + public Timestamp getLastUpdateDate(Connection connection, + TuttiTableMetadata table) throws SQLException { + Timestamp result = null; if (table.isWithUpdateDateColumn()) { @@ -356,6 +386,7 @@ int columnCount = table.getColumnsCount(); String tableName = table.getName(); + String tablePrefix = getTablePrefix(table) + " - " + result.getNbRows(tableName); int[] pkIndex = table.getPkIndexs(); @@ -370,7 +401,6 @@ int countR = 0; int insertCount = 0; int updateCount = 0; - int nbRowsToTreat = result.getNbRows(tableName); while (incomingData.next()) { List<String> pk = getPk(incomingData, pkIndex); @@ -410,7 +440,7 @@ if (log.isDebugEnabled()) { String pkAsString = pk.toString(); - log.debug(String.format("[%s] Execute query %s (pk:%s)", tableName, sql, pkAsString)); + log.debug(String.format("%s Execute query %s (pk:%s)", tablePrefix, sql, pkAsString)); } statement.addBatch(); @@ -427,7 +457,7 @@ } if (countR % 10000 == 0) { if (log.isInfoEnabled()) { - log.info(String.format("[%s-%s] Rows Done: %s (inserts: %s, updates: %s)", tableName, nbRowsToTreat, countR, insertCount, updateCount)); + log.info(String.format("%s Done: %s (inserts: %s, updates: %s)", tablePrefix, countR, insertCount, updateCount)); } } } @@ -436,7 +466,7 @@ result.addInserts(tableName, insertCount); result.addUpdates(tableName, updateCount); if (log.isInfoEnabled()) { - log.info(String.format("[%s-%s] Rows Done: %s (inserts: %s, updates: %s)", tableName, nbRowsToTreat, countR, insertCount, updateCount)); + log.info(String.format("%s done: %s (inserts: %s, updates: %s)", tablePrefix, countR, insertCount, updateCount)); } if (insertCount > 0 && insertCount % 1000 != 0) { @@ -447,35 +477,29 @@ } if (log.isDebugEnabled()) { - log.debug(String.format("[%s] INSERT count: %s", tableName, result.getNbInserts(tableName))); - log.debug(String.format("[%s] UPDATE count: %s", tableName, result.getNbUpdates(tableName))); + log.debug(String.format("%s INSERT count: %s", tablePrefix, result.getNbInserts(tableName))); + log.debug(String.format("%s UPDATE count: %s", tablePrefix, result.getNbUpdates(tableName))); } } + protected String getTablePrefix(TuttiTableMetadata table) { + return "[" + table.getName() + "(" + ReferentialSynchronizeHelper.IS_ASSOCIATION_TABLE.apply(table) + ")]"; + + } + public void synchronizeTable(TuttiTableMetadata table, Connection localConnection, Connection remoteConnection, ReferentialSynchronizeResult result) throws SQLException { - // get last updateDate used by local db - Date updateDate = getLastUpdateDate(localConnection, table); - - if (updateDate != null) { - - // just inscrements of 1 milisecond to not having same - updateDate = new Timestamp(DateUtils.setMilliseconds(updateDate, 0).getTime()); - updateDate = new Timestamp(DateUtils.addSeconds(updateDate, 1).getTime()); - } String tableName = table.getName(); - long countToUpdate = - getCountDataToUpdate(remoteConnection, table, updateDate); + String tablePrefix = getTablePrefix(table); - if (log.isInfoEnabled()) { - log.info(String.format("[%s] count to update: %s", tableName, countToUpdate)); - } + // get last updateDate used by local db + Date updateDate = result.getUpdateDate(tableName); - result.addRows(tableName, (int) countToUpdate); + long countToUpdate = result.getNbRows(tableName); if (countToUpdate > 0) { @@ -490,7 +514,6 @@ // there is some data to update - TuttiTable tuttiTable = TuttiTable.valueOf(tableName); if (tuttiTable.isAssociation()) { PreparedStatement deleteStatement = @@ -498,7 +521,7 @@ "DELETE FROM " + tableName); deleteStatement.execute(); if (log.isInfoEnabled()) { - log.info("Delete from association: " + tableName); + log.info(tablePrefix + " Delete association table"); } } @@ -506,7 +529,7 @@ Set<List<String>> existingIds = getExistingPrimaryKeys(localConnection, table); if (log.isInfoEnabled()) { - log.info("[" + tableName + "] existingIds: " + existingIds.size()); + log.info(tablePrefix + " existingIds: " + existingIds.size()); } // update table content @@ -525,6 +548,36 @@ } + public void prepareTable(TuttiTableMetadata table, + Connection localConnection, + Connection remoteConnection, + ReferentialSynchronizeResult result) throws SQLException { + + String tablePrefix = getTablePrefix(table); + + String tableName = table.getName(); + + // get last updateDate used by local db + Timestamp updateDate = getLastUpdateDate(localConnection, table); + + if (updateDate != null) { + + // just inscrements of 1 milisecond to not having same + updateDate = new Timestamp(DateUtils.setMilliseconds(updateDate, 0).getTime()); + updateDate = new Timestamp(DateUtils.addSeconds(updateDate, 1).getTime()); + } + + long countToUpdate = + getCountDataToUpdate(remoteConnection, table, updateDate); + + if (log.isInfoEnabled()) { + log.info(String.format("%s nb rows to update: %s", tablePrefix, countToUpdate)); + } + + result.setUpdateDate(tableName, updateDate); + result.addRows(tableName, (int) countToUpdate); + } + public static void prepareSynch(Connection connection) throws SQLException { PreparedStatement statement = connection.prepareStatement("SET REFERENTIAL_INTEGRITY FALSE;"); statement.executeUpdate(); Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeResult.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeResult.java 2013-02-14 08:42:09 UTC (rev 411) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/synchro/ReferentialSynchronizeResult.java 2013-02-14 10:40:25 UTC (rev 412) @@ -28,6 +28,7 @@ import com.google.common.collect.Maps; import com.google.common.collect.Sets; +import java.sql.Timestamp; import java.util.Map; import java.util.Set; @@ -63,6 +64,13 @@ protected final Map<String, Integer> updateHits = Maps.newTreeMap(); /** + * timestamp of last update date (per table). + * + * @since 1.0 + */ + protected final Map<String, Timestamp> updateDateHits = Maps.newTreeMap(); + + /** * All table treated. * * @since 1.0 @@ -94,6 +102,30 @@ return ImmutableSet.copyOf(tableNames); } + public long getTotalRows() { + long result = 0; + for (Integer nb : rowHits.values()) { + result += nb; + } + return result; + } + + public long getTotalInserts() { + long result = 0; + for (Integer nb : insertHits.values()) { + result += nb; + } + return result; + } + + public long getTotalUpdates() { + long result = 0; + for (Integer nb : updateHits.values()) { + result += nb; + } + return result; + } + public int getNbRows(String tableName) { Integer result = rowHits.get(tableName); if (result == null) { @@ -136,6 +168,14 @@ } } + public Timestamp getUpdateDate(String tableName) { + return updateDateHits.get(tableName); + } + + public void setUpdateDate(String tableName, Timestamp t) { + updateDateHits.put(tableName, t); + } + public void addTableName(String tableName) { tableNames.add(tableName); }

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