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r700 - in trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation: catches catches/species/frequency fishing
by kmorin＠users.forge.codelutin.com March 28, 2013

March 28, 2013

Author: kmorin Date: 2013-03-28 14:45:30 +0100 (Thu, 28 Mar 2013) New Revision: 700 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/700 Log: fixes #2106 [ESPECE] - saisie des mensurations : cliquer sur "simple d?\195?\169nombrement" alors qu'il y a des mensurations de saisie Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/EditCatchesUIHandler.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/frequency/SpeciesFrequencyUI.css trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/frequency/SpeciesFrequencyUIModel.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/fishing/AbstractCaracteristicTabUIModel.java Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/EditCatchesUIHandler.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/EditCatchesUIHandler.java 2013-03-28 12:54:20 UTC (rev 699) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/EditCatchesUIHandler.java 2013-03-28 13:45:30 UTC (rev 700) @@ -184,9 +184,7 @@ protected boolean onTabChanged(int currentIndex, int newIndex) { ui.getCatchesCaracteristicsAttachmentsButton().onCloseUI(); ui.getSpeciesTabContent().getSpeciesBatchAttachmentsButton().onCloseUI(); - setSpeciesSelectedCard(EditCatchesUIHandler.MAIN_CARD); ui.getBenthosTabContent().getBenthosBatchAttachmentsButton().onCloseUI(); - setBenthosSelectedCard(EditCatchesUIHandler.MAIN_CARD); return super.onTabChanged(currentIndex, newIndex); } Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/frequency/SpeciesFrequencyUI.css =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/frequency/SpeciesFrequencyUI.css 2013-03-28 12:54:20 UTC (rev 699) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/frequency/SpeciesFrequencyUI.css 2013-03-28 13:45:30 UTC (rev 700) @@ -235,7 +235,7 @@ #dataInFrequenciesWarningContainer { background: {new java.awt.Color(245, 218, 88)}; - visible: {!org.apache.commons.collections.CollectionUtils.isEmpty(model.getBatch().getFrequency())}; + visible: {model.getRowsInError().isEmpty()}; } #dataInFrequenciesWarning { Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/frequency/SpeciesFrequencyUIModel.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/frequency/SpeciesFrequencyUIModel.java 2013-03-28 12:54:20 UTC (rev 699) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/frequency/SpeciesFrequencyUIModel.java 2013-03-28 13:45:30 UTC (rev 700) @@ -28,6 +28,9 @@ import fr.ifremer.tutti.ui.swing.content.operation.catches.species.SpeciesBatchRowModel; import fr.ifremer.tutti.ui.swing.util.table.AbstractTuttiTableUIModel; +import java.util.Collections; +import java.util.List; + /** * @author tchemit <chemit(a)codelutin.com> * @since 0.2 @@ -234,4 +237,10 @@ } return result; } + + // method with an argument for the binding + public boolean isOneRowValid(List<SpeciesFrequencyRowModel> frequencies) { + return isOneRowValid(); + } + } Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/fishing/AbstractCaracteristicTabUIModel.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/fishing/AbstractCaracteristicTabUIModel.java 2013-03-28 12:54:20 UTC (rev 699) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/fishing/AbstractCaracteristicTabUIModel.java 2013-03-28 13:45:30 UTC (rev 700) @@ -25,6 +25,9 @@ * #L% */ +import com.google.common.base.Predicate; +import com.google.common.base.Predicates; +import com.google.common.collect.Iterables; import com.google.common.collect.Sets; import fr.ifremer.tutti.persistence.entities.CaracteristicMap; import fr.ifremer.tutti.persistence.entities.data.FishingOperation; @@ -32,6 +35,7 @@ import fr.ifremer.tutti.ui.swing.util.AbstractTuttiBeanUIModel; import fr.ifremer.tutti.ui.swing.util.TabContentModel; import fr.ifremer.tutti.ui.swing.util.table.AbstractTuttiTableUIModel; +import org.apache.commons.lang3.ObjectUtils; import java.io.Serializable; import java.util.List; @@ -104,13 +108,8 @@ @Override public boolean isEmpty() { - boolean result = caracteristicMap == null; - if (!result) { - Set s = Sets.newHashSet(caracteristicMap.values()); - s.remove(null); - result = s.isEmpty(); - } - return result; + return caracteristicMap == null + || Iterables.all(caracteristicMap.values(), Predicates.isNull()); } @Override

1 0

r699 - in trunk/tutti-ui-swing/src/main: filtered-resources java/fr/ifremer/tutti/ui/swing/config java/fr/ifremer/tutti/ui/swing/content
by kmorin＠users.forge.codelutin.com March 28, 2013

March 28, 2013

Author: kmorin Date: 2013-03-28 13:54:20 +0100 (Thu, 28 Mar 2013) New Revision: 699 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/699 Log: refs #1840 [REFERENTIEL] - Gestion des fonctionnalit?\195?\169s administrateur Modified: trunk/tutti-ui-swing/src/main/filtered-resources/tutti.config trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/config/TuttiApplicationConfig.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/config/TuttiApplicationConfigOption.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/ImportTemporaryReferentialAction.java Modified: trunk/tutti-ui-swing/src/main/filtered-resources/tutti.config =================================================================== --- trunk/tutti-ui-swing/src/main/filtered-resources/tutti.config 2013-03-28 10:05:30 UTC (rev 698) +++ trunk/tutti-ui-swing/src/main/filtered-resources/tutti.config 2013-03-28 12:54:20 UTC (rev 699) @@ -24,6 +24,4 @@ tutti.version=${project.version} tutti.site.url=${project.url} tutti.inceptionYear=${project.inceptionYear} -tutti.organizationName=${license.organizationName} -# the password is ifremer -tutti.admin.password=ef399a6e6ec62c6e142440241a5b98f8 \ No newline at end of file +tutti.organizationName=${license.organizationName} \ No newline at end of file Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/config/TuttiApplicationConfig.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/config/TuttiApplicationConfig.java 2013-03-28 10:05:30 UTC (rev 698) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/config/TuttiApplicationConfig.java 2013-03-28 12:54:20 UTC (rev 699) @@ -349,4 +349,8 @@ public String getUpdateUrl() { return applicationConfig.getOption(TuttiApplicationConfigOption.TUTTI_UPDATE_URL.getKey()); } + + public String getAdminPassword() { + return applicationConfig.getOption(TuttiApplicationConfigOption.ADMIN_PASSWORD.getKey()); + } } Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/config/TuttiApplicationConfigOption.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/config/TuttiApplicationConfigOption.java 2013-03-28 10:05:30 UTC (rev 698) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/config/TuttiApplicationConfigOption.java 2013-03-28 12:54:20 UTC (rev 699) @@ -207,6 +207,14 @@ n_("tutti.config.option.ui.dateFormat.description"), "dd/MM/yyyy", String.class + ), + + ADMIN_PASSWORD( + "tutti.admin.password", + n_("tutti.config.option.ui.dateFormat.description"), + // "ifremer" by default + "ef399a6e6ec62c6e142440241a5b98f8", + String.class ); /** Configuration key. */ Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/ImportTemporaryReferentialAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/ImportTemporaryReferentialAction.java 2013-03-28 10:05:30 UTC (rev 698) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/ImportTemporaryReferentialAction.java 2013-03-28 12:54:20 UTC (rev 699) @@ -56,7 +56,7 @@ JOptionPane.WARNING_MESSAGE); if (answer != null) { String cryptedAnswer = StringUtil.encodeMD5(answer); - String correctAnswer = getConfig().getApplicationConfig().getOption("tutti.admin.password"); + String correctAnswer = getConfig().getAdminPassword(); result = StringUtils.equals(cryptedAnswer, correctAnswer); if (!result) {

1 0

r698 - in trunk/tutti-ui-swing/src/main: filtered-resources java/fr/ifremer/tutti/ui/swing/content resources/i18n
by kmorin＠users.forge.codelutin.com March 28, 2013

March 28, 2013

Author: kmorin Date: 2013-03-28 11:05:30 +0100 (Thu, 28 Mar 2013) New Revision: 698 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/698 Log: fixes #1840 [REFERENTIEL] - Gestion des fonctionnalit?\195?\169s administrateur Modified: trunk/tutti-ui-swing/src/main/filtered-resources/tutti.config trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/ImportTemporaryReferentialAction.java trunk/tutti-ui-swing/src/main/resources/i18n/tutti-ui-swing_en_GB.properties trunk/tutti-ui-swing/src/main/resources/i18n/tutti-ui-swing_fr_FR.properties Modified: trunk/tutti-ui-swing/src/main/filtered-resources/tutti.config =================================================================== --- trunk/tutti-ui-swing/src/main/filtered-resources/tutti.config 2013-03-28 00:20:21 UTC (rev 697) +++ trunk/tutti-ui-swing/src/main/filtered-resources/tutti.config 2013-03-28 10:05:30 UTC (rev 698) @@ -24,4 +24,6 @@ tutti.version=${project.version} tutti.site.url=${project.url} tutti.inceptionYear=${project.inceptionYear} -tutti.organizationName=${license.organizationName} \ No newline at end of file +tutti.organizationName=${license.organizationName} +# the password is ifremer +tutti.admin.password=ef399a6e6ec62c6e142440241a5b98f8 \ No newline at end of file Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/ImportTemporaryReferentialAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/ImportTemporaryReferentialAction.java 2013-03-28 00:20:21 UTC (rev 697) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/ImportTemporaryReferentialAction.java 2013-03-28 10:05:30 UTC (rev 698) @@ -25,11 +25,10 @@ */ import fr.ifremer.tutti.ui.swing.TuttiScreen; -import org.apache.commons.lang3.StringUtils; +import org.apache.commons.lang.StringUtils; import org.nuiton.util.StringUtil; -import javax.swing.JOptionPane; -import javax.swing.SwingUtilities; +import javax.swing.*; import static org.nuiton.i18n.I18n._; @@ -49,19 +48,29 @@ protected boolean prepareAction() throws Exception { boolean result = super.prepareAction(); if (result) { - String answer = JOptionPane.showInputDialog(getContext().getActionUI(), - _("tutti.manageTemporaryReferential.passwordDialog.message"), - _("tutti.manageTemporaryReferential.passwordDialog.title"), - JOptionPane.WARNING_MESSAGE); - if (answer != null) { - String cryptedAnswer = StringUtil.encodeMD5(answer); - String correctAnswer = StringUtil.encodeMD5("test"); - //TODO kmorin 20130327 error message if wrong password - result = StringUtils.equals(cryptedAnswer, correctAnswer); + String answer = null; + do { + answer = JOptionPane.showInputDialog(getContext().getActionUI(), + _("tutti.manageTemporaryReferential.passwordDialog.message"), + _("tutti.manageTemporaryReferential.passwordDialog.title"), + JOptionPane.WARNING_MESSAGE); + if (answer != null) { + String cryptedAnswer = StringUtil.encodeMD5(answer); + String correctAnswer = getConfig().getApplicationConfig().getOption("tutti.admin.password"); + result = StringUtils.equals(cryptedAnswer, correctAnswer); - } else { - result = false; - } + if (!result) { + JOptionPane.showMessageDialog(getContext().getActionUI(), + _("tutti.manageTemporaryReferential.passwordDialog.error.message"), + _("tutti.manageTemporaryReferential.passwordDialog.error.title"), + JOptionPane.ERROR_MESSAGE); + } + + } else { + result = false; + } + + } while (!result && answer != null); } return result; } Modified: trunk/tutti-ui-swing/src/main/resources/i18n/tutti-ui-swing_en_GB.properties =================================================================== --- trunk/tutti-ui-swing/src/main/resources/i18n/tutti-ui-swing_en_GB.properties 2013-03-28 00:20:21 UTC (rev 697) +++ trunk/tutti-ui-swing/src/main/resources/i18n/tutti-ui-swing_en_GB.properties 2013-03-28 10:05:30 UTC (rev 698) @@ -856,6 +856,8 @@ tutti.manageTemporaryReferential.field.species.tip= tutti.manageTemporaryReferential.field.vessel= tutti.manageTemporaryReferential.field.vessel.tip= +tutti.manageTemporaryReferential.passwordDialog.error.message= +tutti.manageTemporaryReferential.passwordDialog.error.title= tutti.manageTemporaryReferential.passwordDialog.message= tutti.manageTemporaryReferential.passwordDialog.title= tutti.manageTemporaryReferential.title= Modified: trunk/tutti-ui-swing/src/main/resources/i18n/tutti-ui-swing_fr_FR.properties =================================================================== --- trunk/tutti-ui-swing/src/main/resources/i18n/tutti-ui-swing_fr_FR.properties 2013-03-28 00:20:21 UTC (rev 697) +++ trunk/tutti-ui-swing/src/main/resources/i18n/tutti-ui-swing_fr_FR.properties 2013-03-28 10:05:30 UTC (rev 698) @@ -860,6 +860,8 @@ tutti.manageTemporaryReferential.field.species.tip= tutti.manageTemporaryReferential.field.vessel=Référentiel Navire tutti.manageTemporaryReferential.field.vessel.tip= +tutti.manageTemporaryReferential.passwordDialog.error.message=Le mot de passe que vous avez entré est incorrect. +tutti.manageTemporaryReferential.passwordDialog.error.title=Mot de passe incorrect tutti.manageTemporaryReferential.passwordDialog.message=Vous souhaitez entrer dans une partie sensible de l'application.\nVous devez entrer le mot de passe pour entrer. tutti.manageTemporaryReferential.passwordDialog.title=Zone sensible tutti.manageTemporaryReferential.title=importer des référentiels temporaires

1 0

r697 - in trunk: . src/site/rst tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content
by tchemit＠users.forge.codelutin.com March 28, 2013

March 28, 2013

Author: tchemit Date: 2013-03-28 01:20:21 +0100 (Thu, 28 Mar 2013) New Revision: 697 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/697 Log: fix doc and prepare release Modified: trunk/pom.xml trunk/src/site/rst/mapping.rst trunk/src/site/rst/update.rst.vm trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/ImportTemporaryReferentialAction.java Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2013-03-27 23:49:51 UTC (rev 696) +++ trunk/pom.xml 2013-03-28 00:20:21 UTC (rev 697) @@ -135,7 +135,7 @@ <postgresqlVersion>9.1-901-1.jdbc4</postgresqlVersion> <licensePluginVersion>1.4</licensePluginVersion> - <jaxxVersion>2.5.15-SNAPSHOT</jaxxVersion> + <jaxxVersion>2.5.15</jaxxVersion> <swingXVersion>1.6.4</swingXVersion> <xworkVersion>2.3.7</xworkVersion> Modified: trunk/src/site/rst/mapping.rst =================================================================== --- trunk/src/site/rst/mapping.rst 2013-03-27 23:49:51 UTC (rev 696) +++ trunk/src/site/rst/mapping.rst 2013-03-28 00:20:21 UTC (rev 697) @@ -115,20 +115,29 @@ Espèces > Espèce La liste des espèces référent non encore utilisés. Voir `détail des requêtes`_. - Note: cette liste est partagée sur les deux onglets espèces - benthos). + Note: cette liste est partagée sur les deux onglets espèces - benthos). Espèces > Tableau Chaque ligne du tableau est stockée sous la forme d'un SpeciesProtocol : *TuttiProtocol.species*. Espèces > Tableau > Espèce + Espèces > Tableau > Code + Espèces > Tableau > Classe de Taille + Espèces > Tableau > Pesée + Espèces > Tableau > Dénombrement + Espèces > Tableau > Catégorie Tri + Espèces > Tableau > Sexe + Espèces > Tableau > Maturité + Espèces > Tableau > Age + Espèces > Tableau > Prélèvement de pièces calcifiées Benthos @@ -141,17 +150,26 @@ Benthos > Tableau Chaque ligne du tableau est stockée sous la forme d'un SpeciesProtocol: *TuttiProtocol.benthos*. - Benthos > Tableau > Espèce - Benthos > Tableau > Code - Benthos > Tableau > Classe de Taille - Benthos > Tableau > Pesée - Benthos > Tableau > Dénombrement - Benthos > Tableau > Catégorie Tri - Benthos > Tableau > Sexe - Benthos > Tableau > Maturité - Benthos > Tableau > Age - Benthos > Tableau > Prélèvement de pièces calcifiées +Benthos > Tableau > Espèce +Benthos > Tableau > Code + +Benthos > Tableau > Classe de Taille + +Benthos > Tableau > Pesée + +Benthos > Tableau > Dénombrement + +Benthos > Tableau > Catégorie Tri + +Benthos > Tableau > Sexe + +Benthos > Tableau > Maturité + +Benthos > Tableau > Age + +Benthos > Tableau > Prélèvement de pièces calcifiées + Trait ~~~~~ @@ -207,7 +225,7 @@ Navire (depuis version 1.2) Identique à celui de la campagne : Operation.vessel (OPERATION.VESSEL_FK) - (Obosolète) : TODO supprimer le code qui fait cette gestion + (Obsolète) : TODO supprimer le code qui fait cette gestion Si le navire est identique à celui de la campagne : Operation.vessel (OPERATION.VESSEL_FK) Sinon : Operation.operationVesselAssociation (OPERATION_VESSEL_ASSOCIATION.VESSEL_FK avec IS_CATCH_ON_OPERATION_VESSEL=0). Operation.vessel est alors rempli avec le premier navire de la liste de la campagne, pour être compatible avec Allegro (on doit toujours avoir : SCIENTIFIC_CRUISE.VESSEL_FK = OPERATION_VESSEL_FK). Modified: trunk/src/site/rst/update.rst.vm =================================================================== --- trunk/src/site/rst/update.rst.vm 2013-03-27 23:49:51 UTC (rev 696) +++ trunk/src/site/rst/update.rst.vm 2013-03-28 00:20:21 UTC (rev 697) @@ -84,8 +84,8 @@ ### DB Updates ################################################################# ################################################################################ - db.version=@dbVersion@ - db.url=zip:http://appup.nuiton.org/tutti/auth/tutti-db-@dbVersion@.zip + db.version=${dbVersion} + db.url=zip:http://appup.nuiton.org/tutti/auth/tutti-db-${dbVersion}.zip db.auth=true Au démarrage de l'application le fichier est lu et si un des composants est Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/ImportTemporaryReferentialAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/ImportTemporaryReferentialAction.java 2013-03-27 23:49:51 UTC (rev 696) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/ImportTemporaryReferentialAction.java 2013-03-28 00:20:21 UTC (rev 697) @@ -25,8 +25,8 @@ */ import fr.ifremer.tutti.ui.swing.TuttiScreen; -import org.apache.commons.lang.StringUtils; -import org.springframework.util.DigestUtils; +import org.apache.commons.lang3.StringUtils; +import org.nuiton.util.StringUtil; import javax.swing.JOptionPane; import javax.swing.SwingUtilities; @@ -54,8 +54,8 @@ _("tutti.manageTemporaryReferential.passwordDialog.title"), JOptionPane.WARNING_MESSAGE); if (answer != null) { - String cryptedAnswer = DigestUtils.md5DigestAsHex(answer.getBytes()); - String correctAnswer = DigestUtils.md5DigestAsHex("test".getBytes()); + String cryptedAnswer = StringUtil.encodeMD5(answer); + String correctAnswer = StringUtil.encodeMD5("test"); //TODO kmorin 20130327 error message if wrong password result = StringUtils.equals(cryptedAnswer, correctAnswer);

1 0

r696 - trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service
by tchemit＠users.forge.codelutin.com March 27, 2013

March 27, 2013

Author: tchemit Date: 2013-03-28 00:49:51 +0100 (Thu, 28 Mar 2013) New Revision: 696 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/696 Log: add fixme Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AttachmentPersistenceServiceImpl.java Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AttachmentPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AttachmentPersistenceServiceImpl.java 2013-03-27 23:46:24 UTC (rev 695) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AttachmentPersistenceServiceImpl.java 2013-03-27 23:49:51 UTC (rev 696) @@ -134,6 +134,7 @@ // Create measurement file MeasurementFile measurementFile = MeasurementFile.Factory.newInstance(); + //FIXME-TC When pmfm will be optional (remove this line) // set measurementFile pmfm measurementFile.setPmfm(load(PmfmImpl.class, enumeration.PMFM_ID_MEASUREMENT_FILE));

1 0

r695 - in trunk: . src/site/rst src/update tutti-persistence/src/main/resources tutti-ui-swing
by tchemit＠users.forge.codelutin.com March 27, 2013

March 27, 2013

Author: tchemit Date: 2013-03-28 00:46:24 +0100 (Thu, 28 Mar 2013) New Revision: 695 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/695 Log: refs #2002: [TECH] - Documentation installation - mise ?\195?\160 jour (am?\195?\169lioration doc) Added: trunk/src/site/rst/update.rst.vm Removed: trunk/src/site/rst/update.rst Modified: trunk/pom.xml trunk/src/site/rst/mapping.rst trunk/src/site/rst/referential.rst trunk/src/update/update-tutti.properties trunk/tutti-persistence/src/main/resources/queries-override.hbm.xml trunk/tutti-ui-swing/pom.xml Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2013-03-27 21:56:27 UTC (rev 694) +++ trunk/pom.xml 2013-03-27 23:46:24 UTC (rev 695) @@ -171,7 +171,7 @@ <jreVersion>1.7.17</jreVersion>  -  +  </properties> Modified: trunk/src/site/rst/mapping.rst =================================================================== --- trunk/src/site/rst/mapping.rst 2013-03-27 21:56:27 UTC (rev 694) +++ trunk/src/site/rst/mapping.rst 2013-03-27 23:46:24 UTC (rev 695) @@ -40,7 +40,7 @@ Zone Program.locations (PROGRAM2LOCATION.LOCATION_FK) -Commentaire +Description Program.description (PROGRAM.DESCRIPTION) Campagne @@ -62,25 +62,21 @@ Nombre de poches En lecture : récupération de la plus grande valeur dans ScientificCruise.fishingTrip.gearPhysicalFeatures.gearPhysicalMeasurement.numericalvalue (GEAR_PHYSICAL_MEASURMENT.NUMERICAL_VALUE avec PMFM_FK=<PMFM_ID_MULTIRIG_NUMBER>) En écriture : valeur dupliquée pour chaque engin (voir "Engin(s)" ci-dessous) dans ScientificCruise.fishingTrip.gearPhysicalFeatures.gearPhysicalMeasurement.numericalvalue (GEAR_PHYSICAL_MEASURMENT.NUMERICAL_VALUE avec PMFM_FK=<PMFM_ID_MULTIRIG_NUMBER>) - -Pays - En lecture : le pays est calculé à partir de ScientificCruise.departureLocation (SCIENTIFIC_CRUISE.DEPARTURE_LOCATION_FK) - en utilisant la hiérarchie des lieux (LOCATION_HIERARCHY) our être sûr d'obtenir un payx et non un lieux de niveau inférieur (ex : un port, etc.) - En écriture : ScientificCruise.departureLocation (SCIENTIFIC_CRUISE.DEPARTURE_LOCATION_FK) et ScientificCruise.returnLocation (SCIENTIFIC_CRUISE.DEPARTURE_LOCATION_FK) +Port de départ + ScientificCruise.fishingTrip.departureLocation (FISHING_TRIP.DEPARTURE_LOCATION_FK) + +Port d'arrivée + ScientificCruise.fishingTrip.returnLocation (FISHING_TRIP.RETURN_LOCATION_FK) + Date de début ScientificCruise.departureDateTime (SCIENTIFIC_CRUISE.DEPARTURE_DATE_TIME) Date de fin ScientificCruise.returnDateTime (SCIENTIFIC_CRUISE.RETURN_DATE_TIME) -Navire(s) - Le premier navire dans le liste est stocké dans ScientificCruise.vessel (SCIENTIFIC_CRUISE.VESSEL_FK). - Les navires suivants sont stockés dans ScientificCruise.fishingTrip.comments - derrière la balise : "#VESSELS=<liste_des_IDs>" - Il n'est pas certain qu'il soit nécessaire de stocker cette liste ailleurs, dans la mesure où - elle peut être calculée à partir de la liste des navires associés à chaque opération (voir "Opération > Navire" ci-dessous), - comme c'est le cas actuellement à l'ouverture d'une campagne de données historiques. +Navire + ScientificCruise.vessel (SCIENTIFIC_CRUISE.VESSEL_FK) Engin(s) ScientificCruise.fishingTrip.gearPhysicalFeatures.gear (GEAR_PHYSICAL_FEATURES.GEAR_FK avec RANK_ORDER=<n° d'ordre dans la liste>) @@ -101,6 +97,61 @@ Commentaire ScientificCruise.comments (SCIENTIFIC_CRUISE.COMMENTS) +Protocole +~~~~~~~~~ + +Informations générales > Nom + TuttiProtocol.name (persisté dans le fichier) + +Informations générales > Commentaire + TuttiProtocol.comment (persisté dans le fichier) + +Caractéristiques + On récupère la liste de tous les pmfm que l'on répartit dans les différents + onglets. Chaque pmfm ne peut être sélectionné que dans une seule liste. + +Espèces + +Espèces > Espèce + La liste des espèces référent non encore utilisés. + Voir `détail des requêtes`_. + Note: cette liste est partagée sur les deux onglets espèces - benthos). + +Espèces > Tableau + Chaque ligne du tableau est stockée sous la forme d'un SpeciesProtocol : *TuttiProtocol.species*. + +Espèces > Tableau > Espèce +Espèces > Tableau > Code +Espèces > Tableau > Classe de Taille +Espèces > Tableau > Pesée +Espèces > Tableau > Dénombrement +Espèces > Tableau > Catégorie Tri +Espèces > Tableau > Sexe +Espèces > Tableau > Maturité +Espèces > Tableau > Age +Espèces > Tableau > Prélèvement de pièces calcifiées + +Benthos + +Benthos > Espèce + La liste des espèces référents non encore utilisés. + Voir `détail des requêtes`_. + Note: cette liste est partagée sur les deux onglets espèces - benthos). + +Benthos > Tableau + Chaque ligne du tableau est stockée sous la forme d'un SpeciesProtocol: *TuttiProtocol.benthos*. + + Benthos > Tableau > Espèce + Benthos > Tableau > Code + Benthos > Tableau > Classe de Taille + Benthos > Tableau > Pesée + Benthos > Tableau > Dénombrement + Benthos > Tableau > Catégorie Tri + Benthos > Tableau > Sexe + Benthos > Tableau > Maturité + Benthos > Tableau > Age + Benthos > Tableau > Prélèvement de pièces calcifiées + Trait ~~~~~ @@ -116,15 +167,15 @@ Strate Operation.gearUseFeatures.fishingArea.regulationLocation (FISHING_AREA2REG_LOCATION.LOCATION_FK associé au FISHING_AREA de l'opération) - En lecture : sélection en tant que locatlité à partir du locationLevel (LOCATION.LOCATION_LEVEL_FK=<LocationLevelId.STRATA>) + En lecture : sélection en tant que localité à partir du locationLevel (LOCATION.LOCATION_LEVEL_FK=<LocationLevelId.STRATA>) Sous-strate Operation.gearUseFeatures.fishingArea.regulationLocation (FISHING_AREA2REG_LOCATION.LOCATION_FK associé au FISHING_AREA de l'opération) - En lecture : sélection en tant que locatlité à partir du locationLevel (LOCATION.LOCATION_LEVEL_FK=<LocationLevelId.SUB_STRATA>) + En lecture : sélection en tant que localité à partir du locationLevel (LOCATION.LOCATION_LEVEL_FK=<LocationLevelId.SUB_STRATA>) Localité operation.gearUseFeatures.fishingArea.regulationLocation (FISHING_AREA2REG_LOCATION.LOCATION_FK associé au FISHING_AREA de l'opération) - En lecture : sélection en tant que locatlité à partir du locationLevel (LOCATION.LOCATION_LEVEL_FK=<LocationLevelId.LOCALITE>) + En lecture : sélection en tant que localité à partir du locationLevel (LOCATION.LOCATION_LEVEL_FK=<LocationLevelId.LOCALITE>) Début de traine > Latitude, Longitude Operation.vesselPosition (VESSEL_POSITION.LATITUDE et VESSEL_POSITION.LONGITUDE), avec startDateTime = "Début de traine > Date et heure" @@ -154,7 +205,10 @@ **WARNING** : modèle UML + synchronisation Allegro à mettre à jour pour pouvoir importer/exporter VesselPersonFeatures et les tables liées Navire - Si le navire est identique au premier de la liste de la campagne : Operation.vessel (OPERATION.VESSEL_FK) + (depuis version 1.2) + Identique à celui de la campagne : Operation.vessel (OPERATION.VESSEL_FK) + (Obosolète) : TODO supprimer le code qui fait cette gestion + Si le navire est identique à celui de la campagne : Operation.vessel (OPERATION.VESSEL_FK) Sinon : Operation.operationVesselAssociation (OPERATION_VESSEL_ASSOCIATION.VESSEL_FK avec IS_CATCH_ON_OPERATION_VESSEL=0). Operation.vessel est alors rempli avec le premier navire de la liste de la campagne, pour être compatible avec Allegro (on doit toujours avoir : SCIENTIFIC_CRUISE.VESSEL_FK = OPERATION_VESSEL_FK). @@ -164,7 +218,15 @@ Commentaire Operation.comments (OPERATION.COMMENTS) - + +Pièces Jointes + Chaque pièce jointes est stockée dans MeasurementFile + (MEASUREMENT_FILE avec PMFM_FK=null, OBJECT_TYPE_FK='OPERATION' et OBJECT_ID=<ID du trait>) + MeasurementFile.path : chemin du fichier (copier dans un répertoire, puis stocké en relatif) + MeasurementFile.name : nom + MeasurementFile.comments : commentaire + **WARNING** : modification de modèle à faire pour pouvoir avoir MEASUREMENT_FILE.PMFM_FK=null + Trait > Mise en oeuvre de l'engin ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -214,20 +276,28 @@ Batch.quantificationMeasurement.numericalValue (QUANTIFICATION_MEASUREMENT.NUMERICAL_VALUE avec IS_REFERENT=1 et PMFM_FK=<PmfmId.WEIGHT_OBSERVED>) Benthos > Poids TOTAL - Sommme des poids des lots "Capture > xxx > Benthos" + Sommme des poids des lots "Capture > xxx > Benthos" Batch.quantificationMeasurement.numericalValue (QUANTIFICATION_MEASUREMENT.NUMERICAL_VALUE avec IS_REFERENT=1 et PMFM_FK=<PmfmId.WEIGHT_OBSERVED>) - + Benthos > Poids total VRAC Lot "Capture > Vrac > Benthos" Batch.quantificationMeasurement.numericalValue (QUANTIFICATION_MEASUREMENT.NUMERICAL_VALUE avec IS_REFERENT=1 et PMFM_FK=<PmfmId.WEIGHT_OBSERVED>) - + Benthos > Poids total VRAC trié Calculé par tutti ? utile seulement si Thalassa ? Benthos > Poids total HORS VRAC TRIE - Lot "Capture > Hors Vrac > Benthos" + Lot "Capture > Hors Vrac > Benthos" Batch.quantificationMeasurement.numericalValue (QUANTIFICATION_MEASUREMENT.NUMERICAL_VALUE avec IS_REFERENT=1 et PMFM_FK=<PmfmId.WEIGHT_OBSERVED>) - + +Pièces Jointes + Chaque pièce jointes est stockée dans MeasurementFile + (MEASUREMENT_FILE avec PMFM_FK=null, OBJECT_TYPE_FK='CATCH_BATCH' et OBJECT_ID=<ID du lot de la capture>) + MeasurementFile.path : chemin du fichier (copier dans un répertoire, puis stocké en relatif) + MeasurementFile.name : nom + MeasurementFile.comments : commentaire + **WARNING** : modification de modèle à faire pour pouvoir avoir MEASUREMENT_FILE.PMFM_FK=null + Capture > Espèces ~~~~~~~~~~~~~~~~~ @@ -245,6 +315,14 @@ Lot "Capture > Vrac > Espèce > Biota" Batch.quantificationMeasurement.numericalValue (QUANTIFICATION_MEASUREMENT.NUMERICAL_VALUE avec IS_REFERENT=1 et PMFM_FK=<PmfmId.WEIGHT_OBSERVED>) +Pièces Jointes + Chaque pièce jointes est stockée dans MeasurementFile + (MEASUREMENT_FILE avec PMFM_FK=null, OBJECT_TYPE_FK='CATCH_BATCH' et OBJECT_ID=<ID du lot VRAC > ESPECES>) + MeasurementFile.path : chemin du fichier (copier dans un répertoire, puis stocké en relatif) + MeasurementFile.name : nom + MeasurementFile.comments : commentaire + **WARNING** : modification de modèle à faire pour pouvoir avoir MEASUREMENT_FILE.PMFM_FK=null + Tableau Chaque ligne du tableau est stockée sous la forme d'un lot (Batch) positionné soit sous le lot "Capture > Vrac > Espèce" @@ -268,7 +346,7 @@ Batch.sortingMeasurement.qualitativeValue (SORTING_MEASUREMENT.QUALITATIVE_VALUE_FK avec PMFM_FK=<PmfmId.MATURITY>) Tableau > Age - Batch.sortingMeasurement.qualitativeValue (SORTING_MEASUREMENT.QUALITATIVE_VALUE_FK avec PMFM_FK=<PmfmId.AGE>) + Batch.sortingMeasurement.numericalValue (SORTING_MEASUREMENT.NUMERICAL_VALUE avec PMFM_FK=<PmfmId.AGE>) Tableau > Poids sous-échantillonné Si vide Batch.samplingRatio = 1 @@ -286,7 +364,7 @@ Tableau > Pièces Jointes Chaque pièce jointes est stockée dans MeasurementFile - (MEASUREMENT_FILE avec PMFM_FK=null, OBJECT_TYPE_FK='BATCH' et OBJECT_ID=<ID du lot de la ligne du tableau>) + (MEASUREMENT_FILE avec PMFM_FK=null, OBJECT_TYPE_FK='SAMPLE' et OBJECT_ID=<ID du lot de la ligne du tableau>) MeasurementFile.path : chemin du fichier (copier dans un répertoire, puis stocké en relatif ?) MeasurementFile.name : nom MeasurementFile.comments : commentaire @@ -312,4 +390,99 @@ Mensuration > Tableau > Poids observé Batch.quantificationMeasurement.numericalValue (QUANTIFICATION_MEASUREMENT.NUMERICAL_VALUE avec IS_REFERENT=1) - \ No newline at end of file + +Capture > Benthos +~~~~~~~~~~~~~~~~~ + +Benthos > Poids total VRAC + Lot "Capture > Vrac > Benthos" + Batch.quantificationMeasurement.numericalValue (QUANTIFICATION_MEASUREMENT.NUMERICAL_VALUE avec IS_REFERENT=1 et PMFM_FK=<PmfmId.WEIGHT_OBSERVED>) + +Poids inerte trié + Lot "Capture > Vrac > Benthos > [TAXON_INERT]" + Batch.referenceTaxon = [TAXON_INERT] (BATCH.REFERENCE_TAXON_FK=<ReferenceTaxonId.INERT>) + Batch.quantificationMeasurement.numericalValue (QUANTIFICATION_MEASUREMENT.NUMERICAL_VALUE avec IS_REFERENT=1 et PMFM_FK=<PmfmId.WEIGHT_OBSERVED>) + **WARNING** : le taxon référent "Inerte" n'existe pas encore, il faut le créé (action Ifremer/J.Martin ?) + +Poids vivant non détaillé trié + Lot "Capture > Vrac > Benthos > Biota" + Batch.quantificationMeasurement.numericalValue (QUANTIFICATION_MEASUREMENT.NUMERICAL_VALUE avec IS_REFERENT=1 et PMFM_FK=<PmfmId.WEIGHT_OBSERVED>) + +Pièces Jointes + Chaque pièce jointes est stockée dans MeasurementFile + (MEASUREMENT_FILE avec PMFM_FK=null, OBJECT_TYPE_FK='CATCH_BATCH' et OBJECT_ID=<ID du lot VRAC > BENTHOS>) + MeasurementFile.path : chemin du fichier (copier dans un répertoire, puis stocké en relatif) + MeasurementFile.name : nom + MeasurementFile.comments : commentaire + **WARNING** : modification de modèle à faire pour pouvoir avoir MEASUREMENT_FILE.PMFM_FK=null + +Tableau + Chaque ligne du tableau est stockée sous la forme d'un lot (Batch) positionné + soit sous le lot "Capture > Vrac > Benthos" + soit sous "Capture > Hors Vrac > Benthos" + +Tableau > Benthos + stockage de l'espèce uniquement pour les lot parent + Batch.referenceTaxon (BATCH.REFERENCE_TAXON_FK) + +Tableau > V/HV + Vrac ou Hors Vrac : Batch.sortingMeasurement.qualitativeValue (SORTING_MEASUREMENT.QUALITATIVE_VALUE_FK avec PMFM_FK=<PmfmId.SORTED_UNSORTED>) + Poids : Batch.quantificationMeasurement.numericalValue (QUANTIFICATION_MEASUREMENT.NUMERICAL_VALUE avec IS_REFERENT=1 et PMFM_FK=<PmfmId.WEIGHT_OBSERVED>) + +Tableau > Class. Tri + Batch.sortingMeasurement.qualitativeValue (SORTING_MEASUREMENT.QUALITATIVE_VALUE_FK avec PMFM_FK=<PmfmId.SIZE_CATEGORY>) + +Tableau > Sexe + Batch.sortingMeasurement.qualitativeValue (SORTING_MEASUREMENT.QUALITATIVE_VALUE_FK avec PMFM_FK=<PmfmId.SEX>) + +Tableau > Maturité + Batch.sortingMeasurement.qualitativeValue (SORTING_MEASUREMENT.QUALITATIVE_VALUE_FK avec PMFM_FK=<PmfmId.MATURITY>) + +Tableau > Age + Batch.sortingMeasurement.numericalValue (SORTING_MEASUREMENT.NUMERICAL_VALUE avec PMFM_FK=<PmfmId.AGE>) + +Tableau > Poids sous-échantillonné + Si vide Batch.samplingRatio = 1 + Sinon : + Batch.samplingRatioText (BATCH.SAMPLING_RATIO_TEXT) concaténé à partir des chaines : "<Poids sous-échantillonné>" + "/" + "<Poids V/HV>" + Batch.samplingRatio (BATCH.SAMPLING_RATIO) calculé par le division : <Poids sous-échantillonné> / <Poids V/HV> + Pour la lecture : on parse samplingRatioText pour récupérer le poids sous-échantillonné. si absent on le calculé à partir de samplingRatio (moins précis car perte possible de précision) + +Tableau > Nombre + Calculé à partir de la somme du nombre d'individus des lots fils (BATCH.INDIVIDUAL_COUNT avec PARENT_BATCH_FK=<ID du lot de la ligne du tableau>) + (voir ci-dessous "Mensuration > Tableau") + +Tableau > Commentaire + Batch.comments + +Tableau > Pièces Jointes + Chaque pièce jointes est stockée dans MeasurementFile + (MEASUREMENT_FILE avec PMFM_FK=null, OBJECT_TYPE_FK='SAMPLE' et OBJECT_ID=<ID du lot de la ligne du tableau>) + MeasurementFile.path : chemin du fichier (copier dans un répertoire, puis stocké en relatif) + MeasurementFile.name : nom + MeasurementFile.comments : commentaire + **WARNING** : modification de modèle à faire pour pouvoir avoir MEASUREMENT_FILE.PMFM_FK=null + +Mensuration > Type de mesure + Dupliqué pour chaque lot de mensuration créé (un lot pour chaque taille saisie) + Batch.sortingMeasurement.pmfm (SORTING_MEASUREMENT.PMFM_FK) + +Mensuration > Pas de la classe de taille + **WARNING** : Non stocké, devrait dépendre de PSFM.precision ? + Peut-etre peut-on le calculer par analyse des mensurations saisies ? (et si aucune mesure prendre la précision du PSFM) + +Mensuration > Tableau + Chaque ligne du tableau de mensuration est stocké sous la forme d'un lot + relié au lot correspondant à la ligne parent du tableau des espèces. (BATCH avec PARENT_BATCH_FK=<ID du lot parent dans le tableau des espèces>) + +Mensuration > Tableau > Classe de taille + Batch.sortingMeasurement.numericalValue (SORTING_MEASUREMENT.NUMERICAL_VALUE avec PMFM_FK=<ID correspondant au "Type de mesure">) + +Mensuration > Tableau > Nombre + Batch.individualCount (BATCH.INDIVIDUAL_COUNT) + +Mensuration > Tableau > Poids observé + Batch.quantificationMeasurement.numericalValue (QUANTIFICATION_MEASUREMENT.NUMERICAL_VALUE avec IS_REFERENT=1) + + +.. _détail des requêtes: referential.html \ No newline at end of file Modified: trunk/src/site/rst/referential.rst =================================================================== --- trunk/src/site/rst/referential.rst 2013-03-27 21:56:27 UTC (rev 694) +++ trunk/src/site/rst/referential.rst 2013-03-27 23:46:24 UTC (rev 695) @@ -39,89 +39,30 @@ +-----------------------------------------------------+-------+-----------------------------------------------------+ | Nom requète | Etat | Commentaire | +=====================================================+=======+=====================================================+ -| [REF-01] Liste des zones d'une série de campagne | OK | | +| [REF-01] Liste des strates / sstrates/ localites | OK | | +-----------------------------------------------------+-------+-----------------------------------------------------+ -| [REF-02] Liste des pays | OK | | +| [REF-02] Liste des navires (scientifique) | OK | (filtre sur le type de navire) | +-----------------------------------------------------+-------+-----------------------------------------------------+ -| [REF-03] Liste des strates / sstrates/ localites | OK | | +| [REF-03] Liste des engins (scientifique) | OK | (filtre sur le type d'engin) | +-----------------------------------------------------+-------+-----------------------------------------------------+ -| [REF-04] Liste des navires (scientifique) | OK | | +| [REF-04] Liste des utilisateurs | OK | Doit-on utiliser limiter aux membres de l'Ifremer ? | +-----------------------------------------------------+-------+-----------------------------------------------------+ -| [REF-05] Liste des navires (pro) | OK | | +| [REF-05] Types d'objet | OK | Pour les pièces-jointes | +-----------------------------------------------------+-------+-----------------------------------------------------+ -| [REF-06] Liste des engins (scientifique) | OK | | +| [REF-06] Catégorie de macro-déchets | OK | | +-----------------------------------------------------+-------+-----------------------------------------------------+ -| [REF-07] Liste des engins (pro) | OK | | +| [REF-07] Catégorie de taille macro-déchets | OK | | +-----------------------------------------------------+-------+-----------------------------------------------------+ -| [REF-08] Liste des utilisateurs | OK | Doit-on utiliser limiter aux membres de l'Ifremer ? | +| [REF-08] Catégorie H/VC | OK | | +-----------------------------------------------------+-------+-----------------------------------------------------+ -| [REF-09] Liste des espèces | OK | Utilisation de synonymes via import refTax ? | +| [REF-09] Catégorie Classe. Tri | OK | | +-----------------------------------------------------+-------+-----------------------------------------------------+ -| [REF-10] Catégorie de macro-déchets | OK | | +| [REF-10] Catégorie Sexe | OK | | +-----------------------------------------------------+-------+-----------------------------------------------------+ -| [REF-11] Catégorie de taille macro-déchets | OK | | +| [REF-11] Catégorie Maturité | OK | | +-----------------------------------------------------+-------+-----------------------------------------------------+ -| [REF-12] Catégorie H/VC | OK | | -+-----------------------------------------------------+-------+-----------------------------------------------------+ -| [REF-13] Catégorie Classe. Tri | OK | | -+-----------------------------------------------------+-------+-----------------------------------------------------+ -| [REF-14] Catégorie Sexe | OK | | -+-----------------------------------------------------+-------+-----------------------------------------------------+ -| [REF-15] Catégorie Maturité | OK | | -+-----------------------------------------------------+-------+-----------------------------------------------------+ -| [REF-16] Conversion Taille-poids |TODO V2| A voir si vraiment à faire | -+-----------------------------------------------------+-------+-----------------------------------------------------+ -[REF-01] Liste des zones d'une série de campagne ------------------------------------------------- - -:: - - SELECT - l.id, - l.label, - l.name, - l.status - FROM LocationImpl l - WHERE - l.locationLevel.id = :locationLevelId - AND l.locationClassification.id = :locationClassificationId - AND l.status.code IN (:statusValidCode, :statusTemporaryCode) - -Paramètres : - -- :locationLevelId = *LocationLevelId.PROGRAM* -- :locationClassificationId = *LocationClassificationId.SECTOR* -- :statusValidCode = *StatusCode.ENABLE* -- :statusTemporaryCode = *StatusCode.TEMPORARY* - -*État:* À Valider et définir la valeur de la constante. - -[REF-02] Liste des pays ------------------------ - -:: - - SELECT - l.id, - l.label, - l.name, - l.status - FROM LocationImpl l - WHERE - l.locationLevel.id = :locationLevelId - AND l.status.code IN (:statusValidCode, :statusTemporaryCode) - - -Paramètres : - -- :locationLevelId = *LocationLevelId.PAYS_ISO3* -- :statusValidCode = *StatusCode.ENABLE* -- :statusTemporaryCode = *StatusCode.TEMPORARY* - -*État:* Valide. - -[REF-03] Liste des strates / sous-strates / localités +[REF-01] Liste des strates / sous-strates / localités ----------------------------------------------------- :: @@ -154,8 +95,8 @@ *État:* Valide. -[REF-04] Liste des navires (scientifique) ------------------------------------------ +[REF-02] Liste des navires (selon son type) +------------------------------------------- :: @@ -166,130 +107,51 @@ vf.name AS vesselName, v.status AS status FROM - VesselImpl v - INNER JOIN v.vesselRegistrationPeriods AS vrp - LEFT OUTER JOIN v.vesselFeatures AS vf - WHERE v.vesselType.id = :vesselTypeId - AND v.status.code IN (:statusValidCode, :statusTemporaryCode) - AND vrp.vesselRegistrationPeriodPk.startDateTime = - ( - SELECT MAX(vrp2.vesselRegistrationPeriodPk.startDateTime) - FROM VesselRegistrationPeriodImpl vrp2 WHERE - vrp2.vesselRegistrationPeriodPk.vessel.code = v.code - AND (vrp2.vesselRegistrationPeriodPk.startDateTime <= :refDate OR :refDate IS NULL) - GROUP BY vrp2.vesselRegistrationPeriodPk.vessel.code - ) - AND vf.startDateTime = - ( - SELECT MAX(vf2.startDateTime) - FROM VesselFeaturesImpl vf2 WHERE - vf2.vessel.code = v.code - AND (vf2.startDateTime <= :refDate OR :refDate IS NULL) - GROUP BY vf2.vessel.code - ) + VesselImpl v + INNER JOIN v.vesselRegistrationPeriods AS vrp + LEFT OUTER JOIN v.vesselFeatures AS vf + WHERE + v.vesselType.id = :vesselTypeId + AND v.status.code IN (:statusValidCode, :statusTemporaryCode) + AND vrp.vesselRegistrationPeriodPk.startDateTime <= :refDate + AND vf.startDateTime <= :refDate + AND coalesce(vrp.endDateTime, :refDate) >= :refDate + AND coalesce(vf.endDateTime, :refDate) >= :refDate + ) Paramètres : -- :gearClassificiationId = *VesselTypeId.SCIENTIFIC_RESEARCH_VESSEL* +- :vesselTypeId = *VesselTypeId.SCIENTIFIC_RESEARCH_VESSEL* / *VesselTypeId.FISHING_VESSEL* - :refDate = date (ou null) - :statusValidCode = *StatusCode.ENABLE* - :statusTemporaryCode = *StatusCode.TEMPORARY* -*État:* Valide mais à optimiser. - -[REF-05] Liste des navires (pro) --------------------------------- - -:: - - SELECT - v.code AS vesselCode, - vrp.registrationCode AS nationalRegistrationCode, - vrp.internationalRegistrationCode as internationalRegistrationCode, - vf.name AS vesselName, - v.status AS status - FROM - VesselImpl v - INNER JOIN v.vesselRegistrationPeriods AS vrp - LEFT OUTER JOIN v.vesselFeatures AS vf - WHERE v.vesselType.id = :vesselTypeId - AND v.status.code IN (:statusValidCode, :statusTemporaryCode) - AND vrp.vesselRegistrationPeriodPk.startDateTime = - ( - SELECT MAX(vrp2.vesselRegistrationPeriodPk.startDateTime) - FROM VesselRegistrationPeriodImpl vrp2 WHERE - vrp2.vesselRegistrationPeriodPk.vessel.code = v.code - AND (vrp2.vesselRegistrationPeriodPk.startDateTime <= :refDate OR :refDate IS NULL) - GROUP BY vrp2.vesselRegistrationPeriodPk.vessel.code - ) - AND vf.startDateTime = - ( - SELECT MAX(vf2.startDateTime) - FROM VesselFeaturesImpl vf2 WHERE - vf2.vessel.code = v.code - AND (vf2.startDateTime <= :refDate OR :refDate IS NULL) - GROUP BY vf2.vessel.code - ) - - -Paramètres : - -- :gearClassificiationId = *VesselTypeId.FISHING_VESSEL* -- :refDate = date (ou null) -- :statusValidCode = *StatusCode.ENABLE* -- :statusTemporaryCode = *StatusCode.TEMPORARY* - -*État:* Valide mais à optimiser. - -[REF-06] Liste des engins (scientifique) ----------------------------------------- - -:: - - SELECT - g.id, - g.label, - g.name, - g.status AS status - FROM GearImpl g - WHERE - g.gearClassification.id= :gearClassificiationId - AND g.status.code IN (:statusValidCode, :statusTemporaryCode) - - -Paramètres : - -- :gearClassificiationId = *GearClassificationId.SCIENTIFIC_CRUISE* -- :statusValidCode = *StatusCode.ENABLE* -- :statusTemporaryCode = *StatusCode.TEMPORARY* - *État:* Valide. -[REF-07] Liste des engins (pro) -------------------------------- +[REF-03] Liste des engins (selon son type) +------------------------------------------ :: SELECT - g.id, - g.label, - g.name, - g.status AS status - FROM GearImpl g - WHERE - g.gearClassification.id= :gearClassificiationId - AND g.status.code IN (:statusValidCode, :statusTemporaryCode) + g.id, + g.label, + g.name, + g.status AS status + FROM GearImpl g + WHERE + g.gearClassification.id= :gearClassificiationId + AND g.status.code IN (:statusValidCode, :statusTemporaryCode) Paramètres : -- :gearClassificiationId = *GearClassificationId.FAO* +- :gearClassificiationId = *GearClassificationId.SCIENTIFIC_CRUISE* / *GearClassificationId.FAO* - :statusValidCode = *StatusCode.ENABLE* - :statusTemporaryCode = *StatusCode.TEMPORARY* *État:* Valide. - -[REF-08] Liste des utilisateurs +[REF-04] Liste des utilisateurs ------------------------------- :: @@ -322,62 +184,48 @@ *État:* Valide. -[REF-09] Liste des espèces --------------------------- - -:: - - voir TaxonSpecificDao.getAllTaxonRefTax() - -*État:* Valide. - -[REF-10] Catégorie de macro-déchets +[REF-05] Catégorie de macro-déchets ----------------------------------- [REF-T01] + [REF-T02] avec :pmfmId = *PmfmId.MARINE_LITTER_TYPE* *État:* Valide. -[REF-11] Catégorie de taille macro-déchets +[REF-06] Catégorie de taille macro-déchets ------------------------------------------- [REF-T01] + [REF-T02] avec :pmfmId = *PmfmId.MARINE_LITTER_SIZE_CATEGORY* *État:* Valide. -[REF-12] Catégorie H/VC +[REF-07] Catégorie H/VC ----------------------- [REF-T01] + [REF-T02] avec :pmfmId = *PmfmId.SORTED_UNSORTED* *État:* Valide. -[REF-13] Catégorie Classe. Tri +[REF-08] Catégorie Classe. Tri ------------------------------ [REF-T01] + [REF-T02] avec :pmfmId = *PmfmId.SIZE_CATEGORY* *État:* Valide. -[REF-14] Catégorie Sexe +[REF-09] Catégorie Sexe ----------------------- [REF-T01] + [REF-T02] avec :pmfmId = *PmfmId.SEX* *État:* Valide. -[REF-15] Catégorie Maturité +[REF-10] Catégorie Maturité --------------------------- [REF-T01] + [REF-T02] avec :pmfmId = *PmfmId.MATURITY* *État:* Valide. -[REF-16] Conversion Taille-poids --------------------------------- - -*État:* A FAIRE. - Les requètes techniques ~~~~~~~~~~~~~~~~~~~~~~~ @@ -390,8 +238,12 @@ +-----------------------------------------------------+-------+-----------------------------------------------------+ | [REF-T03] Liste de tous les psfm | OK | | +-----------------------------------------------------+-------+-----------------------------------------------------+ -| [REF-T04] Lieu statistique à partir de lat/long | OK | | +| [REF-T04] Liste des lieux | OK | (filtre level Classification) | +-----------------------------------------------------+-------+-----------------------------------------------------+ +| [REF-T05] Récupération d'un lieu | OK | | ++-----------------------------------------------------+-------+-----------------------------------------------------+ +| [REF-T06] Type d'un object pièce-jointe | OK | | ++-----------------------------------------------------+-------+-----------------------------------------------------+ [REF-T01] Détail d'un psfm par son id ------------------------------------- @@ -476,9 +328,62 @@ *État:* Valide. -[REF-T04] Lieu statistique (rectangle statistique) à partir de lat/long ------------------------------------------------------------------------ +[REF-T04] Liste des lieux (filtre locationLevel et locationClassification) +-------------------------------------------------------------------------- -Utiliser *LocationService.getLocationIdByLatLong()* (adagio-core) +:: + SELECT + l.id as locationId, + l.label as locationLabel, + l.name as locationName, + l.status as status + FROM LocationImpl l + WHERE + l.locationLevel.id = :locationLevelId + AND l.locationClassification.id = :locationClassificationId + AND l.status.code IN (:statusValidCode, :statusTemporaryCode) + +Paramètres : + +- :locationLevelId = id du locationLevel +- :locationClassificationId = id du locationClassification +- :unitIdNone = *UnitId.NONE* +- :statusValidCode = *StatusCode.ENABLE* +- :statusTemporaryCode = *StatusCode.TEMPORARY* + +*État:* Valide. + +[REF-T05] Récupération d'un lieu par son id +------------------------------------------- + +:: + + SELECT + l.id as locationId, + l.label as locationLabel, + l.name as locationName, + l.status as status + FROM + LocationImpl l + WHERE + l.id = :locationId + +Paramètres : + +- :locationId = id du lieu + +*État:* Valide. + +[REF-06] Type d'un object pièce-jointe +-------------------------------------- + +:: + + SELECT + p.code AS objectTypeCode, + p.name AS objectTypeName, + p.description AS objectTypeDescription + FROM ObjectTypeImpl p + *État:* Valide. \ No newline at end of file Deleted: trunk/src/site/rst/update.rst =================================================================== --- trunk/src/site/rst/update.rst 2013-03-27 21:56:27 UTC (rev 694) +++ trunk/src/site/rst/update.rst 2013-03-27 23:46:24 UTC (rev 695) @@ -1,119 +0,0 @@ -.. - -.. * #%L -.. * Tutti -.. * $Id$ -.. * $HeadURL$ -.. * %% -.. * Copyright (C) 2012 - 2013 Ifremer -.. * %% -.. * This program is free software: you can redistribute it and/or modify -.. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 3 of the -.. * License, or (at your option) any later version. -.. * -.. * This program is distributed in the hope that it will be useful, -.. * but WITHOUT ANY WARRANTY; without even the implied warranty of -.. * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -.. * GNU General Public License for more details. -.. * -.. * You should have received a copy of the GNU General Public -.. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-3.0.html>. -.. * #L% -.. - - -======================= -Mise à jour du logiciel -======================= - -Présentation ------------- - -**Tutti** utilise un mécanisme simple pour effectuer les mises à jour de ses -différents composants, à savoir: - -1. Mise à jour de la JRE -2. Mise à jour du programme Tutti -3. Mise à jour des fichiers de traductions -4. Mise à jour de la base de données. - -Principe des mises à jour -------------------------- - -Chaque composant est contenu dans un répertoire et possède un fichier -obligatoirement nommé **version.appup** qui contient la version du composant. - -Un fichier de propriétés disponible sur le réseau à l'adresse suivante: -http://appup.forge.codelutin.com/tutti/update-tutti.properties - -contient la description des dernières version disponibles. - -:: - - ################################################################################ - ### JRE Updates ################################################################ - ################################################################################ - - jre.version=1.7.10 - linux.amd64.jre.url=zip:http://nexus.nuiton.org/nexus/content/repositories/… - linux.i386.jre.url=zip:http://nexus.nuiton.org/nexus/content/repositories/j… - windows.amd64.jre.url=zip:http://nexus.nuiton.org/nexus/content/repositorie… - windows.i386.jre.url=zip:http://nexus.nuiton.org/nexus/content/repositories… - - ################################################################################ - ### Tutti Updates ############################################################## - ################################################################################ - - tutti.version=1.0-SNAPSHOT - tutti.url=zip:http://nexus.nuiton.org/nexus/content/repositories/other-rele… - - ################################################################################ - ### I18n Updates ############################################################### - ################################################################################ - - i18n.version=1.0-SNAPSHOT - i18n.url=zip:http://nexus.nuiton.org/nexus/content/repositories/other-relea… - - ################################################################################ - ### DB Updates ################################################################# - ################################################################################ - - db.version=2013.02.02 - db.url=zip:http://appup.forge.codelutin.com/tutti/auth/tutti-db-2013.02.02.… - db.auth=true - -Au démarrage de l'application le fichier est lu et si un des composants est -plus récent dans la description du fichier de mises à jour, il est téléchargé -puis l'application l'intègre. - -Chaque composant téléchargeable doit être un fichier zip (mais d'autre formats -d'archivage sont possibles) et contenir un seul répertoire (il n'est pas -possible d'avoir le composant directement à la racine de l'archive). - -Mettre en place une nouvelle mise à jour ----------------------------------------- - -Pour pouvoir définir une nouvelle mise à jour, il faut donc modifier le fichier -de mises à jour : - -1. changer la version du composant -2. changer l'url de téléchargement du composant. - -Mise à jour sécurisées ----------------------- - -La mise à jour de la base est sécurisée, à savoir que l'url d'accès au zip de -la base requière un mot de passe. - -Le fichier de mise à jour quand à lui sera toujours disponible publiquement. - -Pré-requis à la création d'une nouvelle version de Tutti --------------------------------------------------------- - -pour pouvoir créer une nouvelle version de Tutti, il nous faut connaitre la -dernière mise à jour de la base. - -Ainsi nous pourrons monter les version du fichier de mise à jour automatiquement. - -Les autres composants (jre, tutti et i18n) sont automatiquement gérés lors de -la création de la nouvelle version. \ No newline at end of file Copied: trunk/src/site/rst/update.rst.vm (from rev 694, trunk/src/site/rst/update.rst) =================================================================== --- trunk/src/site/rst/update.rst.vm (rev 0) +++ trunk/src/site/rst/update.rst.vm 2013-03-27 23:46:24 UTC (rev 695) @@ -0,0 +1,129 @@ +.. - +.. * #%L +.. * Tutti +.. * $Id$ +.. * $HeadURL$ +.. * %% +.. * Copyright (C) 2012 - 2013 Ifremer +.. * %% +.. * This program is free software: you can redistribute it and/or modify +.. * it under the terms of the GNU General Public License as +.. * published by the Free Software Foundation, either version 3 of the +.. * License, or (at your option) any later version. +.. * +.. * This program is distributed in the hope that it will be useful, +.. * but WITHOUT ANY WARRANTY; without even the implied warranty of +.. * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +.. * GNU General Public License for more details. +.. * +.. * You should have received a copy of the GNU General Public +.. * License along with this program. If not, see +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. +.. * #L% +.. - + +======================= +Mise à jour du logiciel +======================= + +Présentation +------------ + +**Tutti** utilise un mécanisme simple pour effectuer les mises à jour de ses +différents composants, à savoir: + +1. Mise à jour de la JRE +2. Mise à jour du programme Tutti +3. Mise à jour des fichiers de traductions +4. Mise à jour des fichiers d'aide +5. Mise à jour de la base de données. + +Principe des mises à jour +------------------------- + +Chaque composant est contenu dans un répertoire et possède un fichier +obligatoirement nommé **version.appup** qui contient la version du composant. + +Un fichier de propriétés disponible sur le réseau à l'adresse suivante: +http://appup.forge.codelutin.com/tutti/update-tutti.properties + +contient la description des dernières version disponibles. + +:: + + ################################################################################ + ### JRE Updates ################################################################ + ################################################################################ + + jre.version=${jreVersion} + linux.i386.jre.url=zip:http://nexus.nuiton.org/nexus/content/repositories/j… + windows.i386.jre.url=zip:http://nexus.nuiton.org/nexus/content/repositories… + + ################################################################################ + ### Tutti Updates ############################################################## + ################################################################################ + + tutti.version=${project.version} + tutti.url=zip:http://nexus.nuiton.org/nexus/content/repositories/other-rele… + + ################################################################################ + ### I18n Updates ############################################################### + ################################################################################ + + i18n.version=${project.version} + i18n.url=zip:http://nexus.nuiton.org/nexus/content/repositories/other-relea… + + ################################################################################ + ### Help Updates ############################################################### + ################################################################################ + + help.version=${project.version} + help.url=zip:http://nexus.nuiton.org/nexus/content/repositories/other-relea… + + ################################################################################ + ### DB Updates ################################################################# + ################################################################################ + + db.version=@dbVersion@ + db.url=zip:http://appup.nuiton.org/tutti/auth/tutti-db-@dbVersion@.zip + db.auth=true + +Au démarrage de l'application le fichier est lu et si un des composants est +plus récent dans la description du fichier de mises à jour, il est téléchargé +puis l'application l'intègre. + +Chaque composant téléchargeable doit être un fichier zip (mais d'autre formats +d'archivage sont possibles) et contenir un seul répertoire (il n'est pas +possible d'avoir le composant directement à la racine de l'archive). + +Vous pouvez télécharger les composants fournis dans le fichier des mises à jours. + +Mettre en place une nouvelle mise à jour +---------------------------------------- + +Pour pouvoir définir une nouvelle mise à jour, il faut donc modifier le fichier +de mises à jour : + +1. changer la version du composant +2. créer l'archive de la mise à jour +3. changer l'url de téléchargement du composant. +4. déployer l'archive + +Mise à jour sécurisées +---------------------- + +La mise à jour de la base est sécurisée, à savoir que l'url d'accès au zip de +la base requière un mot de passe. + +Le fichier de mise à jour quand à lui sera toujours disponible publiquement. + +Pré-requis à la création d'une nouvelle version de Tutti +-------------------------------------------------------- + +Pour pouvoir créer une nouvelle version de Tutti, il nous faut connaitre la +dernière mise à jour de la base. + +Ainsi nous pourrons monter les versions du fichier de mise à jour automatiquement. + +Les autres composants (jre, tutti, i18n, help) sont automatiquement gérés lors de +la création de la nouvelle version. \ No newline at end of file Modified: trunk/src/update/update-tutti.properties =================================================================== --- trunk/src/update/update-tutti.properties 2013-03-27 21:56:27 UTC (rev 694) +++ trunk/src/update/update-tutti.properties 2013-03-27 23:46:24 UTC (rev 695) @@ -27,10 +27,10 @@ ################################################################################ jre.version=@jreVersion@ -linux.amd64.jre.url=zip:http://nexus.nuiton.org/nexus/content/repositories/jvm/com/oracle/jre/@jreVersion@/jre-@jreVersion@-linux-x64.zip linux.i386.jre.url=zip:http://nexus.nuiton.org/nexus/content/repositories/j… -windows.amd64.jre.url=zip:http://nexus.nuiton.org/nexus/content/repositories/jvm/com/oracle/jre/@jreVersion@/jre-@jreVersion@-windows-x64.zip windows.i386.jre.url=zip:http://nexus.nuiton.org/nexus/content/repositories… +#linux.amd64.jre.url=zip:http://nexus.nuiton.org/nexus/content/repositories/jvm/com/oracle/jre/@jreVersion@/jre-@jreVersion@-linux-x64.zip +#windows.amd64.jre.url=zip:http://nexus.nuiton.org/nexus/content/repositories/jvm/com/oracle/jre/@jreVersion@/jre-@jreVersion@-windows-x64.zip ################################################################################ ### Tutti Updates ############################################################## Modified: trunk/tutti-persistence/src/main/resources/queries-override.hbm.xml =================================================================== --- trunk/tutti-persistence/src/main/resources/queries-override.hbm.xml 2013-03-27 21:56:27 UTC (rev 694) +++ trunk/tutti-persistence/src/main/resources/queries-override.hbm.xml 2013-03-27 23:46:24 UTC (rev 695) @@ -498,11 +498,36 @@ <query-param name="locationId" type="java.lang.Integer"/> </query> + +  + <query cacheable="true" name="allObjectType"> + <![CDATA[ + SELECT + p.code AS objectTypeCode, + p.name AS objectTypeName, + p.description AS objectTypeDescription + FROM ObjectTypeImpl p + ]]> + </query> + +  + <query cacheable="true" name="objectType"> + <![CDATA[ + SELECT + p.code AS objectTypeCode, + p.name AS objectTypeName, + p.description AS objectTypeDescription + FROM ObjectTypeImpl p + WHERE p.code = :objectTypeCode + ]]> + <query-param name="objectTypeCode" type="java.lang.String"/> + </query> +    -  +  <query cacheable="true" name="allFishingOperationLocationByParent"> <![CDATA[ SELECT @@ -529,7 +554,7 @@ <query-param name="statusTemporaryCode" type="java.lang.String"/> </query> -  +  <query cacheable="true" name="allVessels"> <![CDATA[ SELECT @@ -557,27 +582,7 @@ <query-param name="statusTemporaryCode" type="java.lang.String"/> </query> - <query cacheable="true" name="allSimpleVessels"> - <![CDATA[ - SELECT - v.code AS vesselCode, - vf.name AS vesselName, - v.status AS status, - vf.startDateTime - FROM - VesselImpl v - INNER JOIN v.vesselFeatures AS vf - WHERE - v.vesselType.id = :vesselTypeId - AND v.status.code IN (:statusValidCode, :statusTemporaryCode) - ORDER BY vf.startDateTime DESC - ]]> - <query-param name="vesselTypeId" type="java.lang.Integer"/> - <query-param name="statusValidCode" type="java.lang.String"/> - <query-param name="statusTemporaryCode" type="java.lang.String"/> - </query> - -  +  <query cacheable="true" name="vessel"> <![CDATA[ SELECT @@ -604,26 +609,7 @@ <query-param name="statusTemporaryCode" type="java.lang.String"/> </query> -  - <query cacheable="true" name="vessel2"> - <![CDATA[ - SELECT - vrp.registrationCode AS nationalRegistrationCode, - vrp.internationalRegistrationCode as internationalRegistrationCode - FROM - VesselImpl v - INNER JOIN v.vesselRegistrationPeriods AS vrp - WHERE - v.code = :vesselCode - AND NOT(coalesce(vrp.endDateTime, '2999-12-31 00:00:00') < coalesce(:refDate,sysdate) - OR vrp.vesselRegistrationPeriodPk.startDateTime > coalesce(:refDate,sysdate) - ) - ]]> - <query-param name="vesselCode" type="java.lang.String"/> - <query-param name="refDate" type="java.util.Date"/> - </query> - -  +  <query cacheable="true" name="allGears"> <![CDATA[ SELECT @@ -641,6 +627,7 @@ <query-param name="statusTemporaryCode" type="java.lang.String"/> </query> +  <query cacheable="true" name="gear"> <![CDATA[ SELECT @@ -655,7 +642,7 @@ <query-param name="gearId" type="java.lang.Integer"/> </query> -  +  <query cacheable="true" name="allPersons"> <![CDATA[ SELECT DISTINCT @@ -683,7 +670,7 @@ <query-param name="statusTemporaryCode" type="java.lang.String"/> </query> -  +  <query cacheable="true" name="person"> <![CDATA[ SELECT DISTINCT @@ -698,64 +685,6 @@ <query-param name="personId" type="java.lang.Integer"/> </query> -  - <query cacheable="true" name="allLengthStepCaracteristics"> - <![CDATA[ - SELECT - p.id AS pmfmId, - p.parameter.name AS parameterName, - p.matrix.name AS matrixName, - p.fraction.name AS fractionName, - p.method.name AS methodName, - p.parameter.isAlphanumeric AS isAlphanumeric, - p.parameter.isQualitative AS isQualitative, - p.signifFiguresNumber, - p.maximumNumberDecimals, - p.precision, - p.unit.symbol AS symbol, - p.status AS status - FROM PmfmImpl p - WHERE - p.status.code IN (:statusValidCode, :statusTemporaryCode) - AND p.matrix.id = :matrixId - AND p.parameter.isQualitative=false - AND p.parameter.isAlphanumeric=false - AND p.parameter.isCalculated=false - AND p.parameter.code not in (:ageParameterCode, :weightParameterCode) - AND p.method.id <> :methodDeclarationId - ]]> - <query-param name="matrixId" type="java.lang.Integer"/> - <query-param name="ageParameterCode" type="java.lang.String"/> - <query-param name="weightParameterCode" type="java.lang.String"/> - <query-param name="methodDeclarationId" type="java.lang.Integer"/> - <query-param name="statusValidCode" type="java.lang.String"/> - <query-param name="statusTemporaryCode" type="java.lang.String"/> - </query> - -  - <query cacheable="true" name="allObjectType"> - <![CDATA[ - SELECT - p.code AS objectTypeCode, - p.name AS objectTypeName, - p.description AS objectTypeDescription - FROM ObjectTypeImpl p - ]]> - </query> - -  - <query cacheable="true" name="objectType"> - <![CDATA[ - SELECT - p.code AS objectTypeCode, - p.name AS objectTypeName, - p.description AS objectTypeDescription - FROM ObjectTypeImpl p - WHERE p.code = :objectTypeCode - ]]> - <query-param name="objectTypeCode" type="java.lang.String"/> - </query> -    Modified: trunk/tutti-ui-swing/pom.xml =================================================================== --- trunk/tutti-ui-swing/pom.xml 2013-03-27 21:56:27 UTC (rev 694) +++ trunk/tutti-ui-swing/pom.xml 2013-03-27 23:46:24 UTC (rev 695) @@ -249,12 +249,6 @@ <version>${project.version}</version> </dependency> -  - <dependency> <groupId>org.nuiton</groupId> <artifactId>nuiton-utils</artifactId> @@ -366,11 +360,6 @@ <artifactId>swingx-autocomplete</artifactId> </dependency> -  -  <dependency>

1 0

r694 - in trunk: tutti-persistence/src/main/java/fr/ifremer/tutti/persistence tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/entities/protocol tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service tutti-service/src/main/java/fr/ifremer/tutti/service/protocol tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri tutti-service/src/test/java/fr/ifremer/tutti/service/referential tutti-ui-swin
by tchemit＠users.forge.codelutin.com March 27, 2013

March 27, 2013

Author: tchemit Date: 2013-03-27 22:56:27 +0100 (Wed, 27 Mar 2013) New Revision: 694 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/694 Log: prepare release (reformat code, clean imports, ...) Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/ProgressionModel.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceService.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ProtocolPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiEnumerationFile.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/entities/protocol/TuttiProtocolsTest.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceWriteTest.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/CruisePersistenceServiceWriteTest.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/FishingOperationPersistenceServiceWriteTest.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/protocol/SpeciesRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/CarrouselRowModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriCatch.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/SpeciesRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/SpeciesRowModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/TuttiPupitriImportExportService.java trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/referential/TuttiReferentialImportExportServiceTest.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/ImportTemporaryReferentialAction.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/config/SampleOrderEditorUIHandler.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/CloneProtocolAction.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/ImportProtocolAction.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/EditFishingOperationAction.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/EditFishingOperationUIModel.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/FishingOperationsUIHandler.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/FishingOperationsUIModel.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/CancelEditCatchBatchAction.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/EditCatchesUIModel.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ImportPupitriAction.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ImportPupitriPopupUI.jaxx trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ImportPupitriPopupUIHandler.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/SampleCategoryComponent.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/benthos/BenthosBatchUIModel.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/benthos/frequency/BenthosFrequencyCellComponent.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/benthos/frequency/BenthosFrequencyUI.jaxx trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/benthos/frequency/BenthosFrequencyUIHandler.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/RemoveSpeciesSubBatchAction.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/SpeciesBatchUIHandler.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/SpeciesBatchUIModel.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/frequency/SpeciesFrequencyUI.jaxx trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/split/SplitSpeciesBatchRowModel.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/split/SplitSpeciesBatchUIHandler.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/fishing/AbstractCaracteristicTabUIModel.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/protocol/ExportPupitriAction.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/AbstractTuttiUIHandler.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/CustomTab.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/TabContentModel.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/comment/CommentModelAware.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/editor/TuttiComputedOrNotDataEditorHandler.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/editor/TuttiComputedOrNotDataTableCell.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/table/CaracteristicRow.java trunk/tutti-ui-swing/src/test/java/fr/ifremer/tutti/ui/swing/BeanValidatorDetectorTest.java Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/ProgressionModel.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/ProgressionModel.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/ProgressionModel.java 2013-03-27 21:56:27 UTC (rev 694) @@ -101,11 +101,11 @@ @Override public void setSize(long size) { - setTotal((int)size); + setTotal((int) size); } @Override public void setCurrent(long current) { - setCurrent((int)current); + setCurrent((int) current); } } Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java 2013-03-27 21:56:27 UTC (rev 694) @@ -49,8 +49,8 @@ import fr.ifremer.tutti.persistence.entities.referential.Vessel; import fr.ifremer.tutti.persistence.service.AccidentalBatchPersistenceService; import fr.ifremer.tutti.persistence.service.AttachmentPersistenceService; +import fr.ifremer.tutti.persistence.service.BenthosBatchPersistenceService; import fr.ifremer.tutti.persistence.service.CatchBatchPersistenceService; -import fr.ifremer.tutti.persistence.service.BenthosBatchPersistenceService; import fr.ifremer.tutti.persistence.service.CruisePersistenceService; import fr.ifremer.tutti.persistence.service.FishingOperationPersistenceService; import fr.ifremer.tutti.persistence.service.MacroWasteBatchPersistenceService; Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceService.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceService.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceService.java 2013-03-27 21:56:27 UTC (rev 694) @@ -51,7 +51,6 @@ * * Note: All childs of the batch should be loaded here. * - * * @param fishingOperationId if of the fishing operation to seek * @return the list of root {@link SpeciesBatch} * @since 1.0 Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ProtocolPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ProtocolPersistenceServiceImpl.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ProtocolPersistenceServiceImpl.java 2013-03-27 21:56:27 UTC (rev 694) @@ -133,7 +133,7 @@ } result.setSpecies(species); - List<SpeciesProtocol> benthos= Lists.newArrayList(); + List<SpeciesProtocol> benthos = Lists.newArrayList(); if (!bean.isBenthosEmpty()) { for (SpeciesProtocol speciesProtocol : bean.getBenthos()) { SpeciesProtocol s = new SpeciesProtocol(); Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiEnumerationFile.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiEnumerationFile.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiEnumerationFile.java 2013-03-27 21:56:27 UTC (rev 694) @@ -66,7 +66,7 @@ public final Integer LOCATION_LEVEL_ID_COUNTRY = null; @Value("${LocationLevelId.PORT}") - public final Integer LOCATION_LEVEL_ID_HARBOUR= null; + public final Integer LOCATION_LEVEL_ID_HARBOUR = null; @Value("${LocationLevelId.LOCALITE}") public final Integer LOCATION_LEVEL_ID_LOCALITE = null; Modified: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/entities/protocol/TuttiProtocolsTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/entities/protocol/TuttiProtocolsTest.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/entities/protocol/TuttiProtocolsTest.java 2013-03-27 21:56:27 UTC (rev 694) @@ -159,7 +159,7 @@ Assert.assertEquals(Lists.newArrayList("14", "18"), protocol.getLengthClassesPmfmId()); Assert.assertEquals(Lists.newArrayList("114", "228", "821"), protocol.getVesselUseFeaturePmfmId()); Assert.assertEquals(Lists.newArrayList("21", "22"), protocol.getGearUseFeaturePmfmId()); - + Assert.assertNotNull(protocol.getSpecies()); Assert.assertEquals(2, protocol.getSpecies().size()); SpeciesProtocol sp1 = protocol.getSpecies().get(0); @@ -281,7 +281,7 @@ b2.setSizeEnabled(true); b2.setWeightEnabled(true); protocol.addBenthos(b2); - + return protocol; } Modified: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceWriteTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceWriteTest.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceWriteTest.java 2013-03-27 21:56:27 UTC (rev 694) @@ -220,7 +220,7 @@ catchBatch.setSpeciesTotalLivingNotItemizedWeight(0.2f); catchBatch.setSpeciesTotalInertWeight(0.1f); } - + // Benthos { catchBatch.setBenthosTotalSortedWeight(24f); Modified: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/CruisePersistenceServiceWriteTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/CruisePersistenceServiceWriteTest.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/CruisePersistenceServiceWriteTest.java 2013-03-27 21:56:27 UTC (rev 694) @@ -82,7 +82,7 @@ // ----------------------------------------------------------------------------- // 1. Test with all properties filled // ----------------------------------------------------------------------------- - cruise.setId((String)null); + cruise.setId((String) null); cruise.setName("Unit-test-" + System.currentTimeMillis()); @@ -148,7 +148,7 @@ // ----------------------------------------------------------------------------- // 2. Test with only mandatory properties // ----------------------------------------------------------------------------- - createdCruise.setId((String)null); + createdCruise.setId((String) null); createdCruise.setHeadOfMission(null); // createdCruise.setBeginDate(cruise.getBeginDate()); // createdCruise.setEndDate(cruise.getEndDate()); @@ -203,7 +203,7 @@ // ----------------------------------------------------------------------------- Cruise cruise = service.getCruise(dbResource.getFixtures().cruiseId()); - cruise.setId((String)null); + cruise.setId((String) null); Calendar calendar = new GregorianCalendar(); cruise.setBeginDate(calendar.getTime()); Modified: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/FishingOperationPersistenceServiceWriteTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/FishingOperationPersistenceServiceWriteTest.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/FishingOperationPersistenceServiceWriteTest.java 2013-03-27 21:56:27 UTC (rev 694) @@ -87,7 +87,7 @@ // Duplicate an existing cruise, to attach new fishing operations cruise = cruiseService.getCruise(dbResource.getFixtures().cruiseId()); - cruise.setId((String)null); + cruise.setId((String) null); cruise.setName("Unit-test-" + System.currentTimeMillis()); Calendar calendar = new GregorianCalendar(); cruise.setBeginDate(calendar.getTime()); @@ -206,7 +206,7 @@ // 2. Test with all properties set // ----------------------------------------------------------------------------- // Set properties - fishingOperation.setId((String)null); + fishingOperation.setId((String) null); fishingOperation.setStationNumber("STA2"); fishingOperation.setFishingOperationNumber(2); fishingOperation.setMultirigAggregation("1"); @@ -319,7 +319,7 @@ // - try to save a operation using a gear not declared in the cruise // - try to save a operation using a multirig aggregation greater than the cruise multirig number // ----------------------------------------------------------------------------- - fishingOperation.setId((String)null); + fishingOperation.setId((String) null); // Find and set a gear not used in the cruise List<Gear> gears = referentialService.getAllFishingGear(); Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/protocol/SpeciesRow.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/protocol/SpeciesRow.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/protocol/SpeciesRow.java 2013-03-27 21:56:27 UTC (rev 694) @@ -27,9 +27,9 @@ import fr.ifremer.tutti.persistence.entities.protocol.SpeciesProtocol; import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; import fr.ifremer.tutti.persistence.entities.referential.Species; +import org.apache.commons.lang3.StringUtils; import java.io.Serializable; -import org.apache.commons.lang3.StringUtils; /** * Row of a {@link SpeciesProtocol} to import or export. @@ -104,7 +104,7 @@ if (!StringUtils.isEmpty(name)) { boolean madeFromAReferentTaxon = isMadeFromAReferentTaxon(); setMadeFromAReferentTaxon(madeFromAReferentTaxon && - species != null && species.getName().equals(name)); + species != null && species.getName().equals(name)); } } @@ -116,7 +116,7 @@ if (!StringUtils.isEmpty(refTaxCode)) { boolean madeFromAReferentTaxon = isMadeFromAReferentTaxon(); setMadeFromAReferentTaxon(madeFromAReferentTaxon && - species != null && species.getRefTaxCode().equals(refTaxCode)); + species != null && species.getRefTaxCode().equals(refTaxCode)); } } Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/CarrouselRowModel.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/CarrouselRowModel.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/CarrouselRowModel.java 2013-03-27 21:56:27 UTC (rev 694) @@ -25,12 +25,13 @@ */ import fr.ifremer.tutti.service.TuttiCsvUtil; -import java.text.ParseException; import org.apache.commons.lang3.StringUtils; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; import org.nuiton.util.csv.ValueParser; +import java.text.ParseException; + /** * @author kmorin <kmorin(a)codelutin.com> * @since 1.2 Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriCatch.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriCatch.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriCatch.java 2013-03-27 21:56:27 UTC (rev 694) @@ -1,13 +1,36 @@ - package fr.ifremer.tutti.service.pupitri; +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + import com.google.common.collect.Maps; import fr.ifremer.tutti.persistence.entities.referential.Species; + import java.io.Serializable; import java.util.Map; /** - * * @author kmorin <kmorin(a)codelutin.com> * @since 1.2 */ Property changes on: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/PupitriCatch.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/SpeciesRow.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/SpeciesRow.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/SpeciesRow.java 2013-03-27 21:56:27 UTC (rev 694) @@ -1,10 +1,32 @@ - package fr.ifremer.tutti.service.pupitri; +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + import java.io.Serializable; /** - * * @author kmorin <kmorin(a)codelutin.com> * @since 1.2 */ Property changes on: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/SpeciesRow.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/SpeciesRowModel.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/SpeciesRowModel.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/SpeciesRowModel.java 2013-03-27 21:56:27 UTC (rev 694) @@ -25,11 +25,8 @@ */ import fr.ifremer.tutti.service.TuttiCsvUtil; -import java.text.ParseException; -import org.apache.commons.lang3.StringUtils; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; -import org.nuiton.util.csv.ValueParser; /** * @author kmorin <kmorin(a)codelutin.com> Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/TuttiPupitriImportExportService.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/TuttiPupitriImportExportService.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/pupitri/TuttiPupitriImportExportService.java 2013-03-27 21:56:27 UTC (rev 694) @@ -43,19 +43,19 @@ import fr.ifremer.tutti.persistence.entities.data.SizeEnum; import fr.ifremer.tutti.persistence.entities.data.SortedUnsortedEnum; import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; -import fr.ifremer.tutti.persistence.entities.protocol.SpeciesProtocol; import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; import fr.ifremer.tutti.persistence.entities.referential.Species; import fr.ifremer.tutti.service.AbstractTuttiService; import fr.ifremer.tutti.service.PersistenceService; import fr.ifremer.tutti.service.TuttiServiceContext; -import fr.ifremer.tutti.service.protocol.TuttiProtocolImportExportService; -import java.io.BufferedWriter; +import org.apache.commons.collections.CollectionUtils; import org.apache.commons.io.FileUtils; import org.apache.commons.io.IOUtils; +import org.apache.commons.lang3.StringUtils; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; +import org.nuiton.util.csv.Export; import org.nuiton.util.csv.Import; import java.io.File; @@ -65,10 +65,6 @@ import java.util.Collections; import java.util.List; import java.util.Map; -import org.apache.commons.collections.CollectionUtils; -import org.apache.commons.lang3.StringUtils; -import org.nuiton.util.csv.Export; -import org.nuiton.util.csv.ExportModel; /** * @author kmorin <kmorin(a)codelutin.com> @@ -130,7 +126,7 @@ addFileAsAttachment(trunkFile, catchBatch); addFileAsAttachment(carrouselFile, catchBatch); addFileAsAttachment(speciesFile, catchBatch); - + persistenceService.saveCatchBatch(catchBatch); } @@ -217,10 +213,10 @@ } protected void importPupitriCarrousel(File carrouselFile, - File speciesFile, - FishingOperation operation, - CatchBatch catchBatch, - List<Species> referentSpecies) { + File speciesFile, + FishingOperation operation, + CatchBatch catchBatch, + List<Species> referentSpecies) { if (log.isInfoEnabled()) { log.info("Will import pupitri operation [" + operation.toString() + @@ -241,25 +237,25 @@ try { // import the species - String[] header = new String [] { - SpeciesRow.PROPERTY_CODE_FIRST_PART, - SpeciesRow.PROPERTY_CODE_SECOND_PART, - SpeciesRow.PROPERTY_SCIENTIFIC_NAME - }; + String[] header = new String[]{ + SpeciesRow.PROPERTY_CODE_FIRST_PART, + SpeciesRow.PROPERTY_CODE_SECOND_PART, + SpeciesRow.PROPERTY_SCIENTIFIC_NAME + }; fileWithHeaders = createFileWithHeaders(speciesFile, header, speciesSeparator); reader = Files.newReader(fileWithHeaders, Charsets.UTF_8); speciesImporter = Import.newImport(speciesCsvModel, reader); // get the map of species by survey code Multimap<String, Species> speciesBySurveyCode = - Multimaps.index(referentSpecies, new Function<Species, String>() { - @Override - public String apply(Species input) { - String surveyCode = String.valueOf(input.getSurveyCode()); - int end = Math.min(surveyCode.length(), 7); - return surveyCode.substring(0, end); - } - }); + Multimaps.index(referentSpecies, new Function<Species, String>() { + @Override + public String apply(Species input) { + String surveyCode = String.valueOf(input.getSurveyCode()); + int end = Math.min(surveyCode.length(), 7); + return surveyCode.substring(0, end); + } + }); // keep only the species whose survey code and name are the same // in theimported file and the referent species Map<String, Species> speciesMap = Maps.newHashMap(); @@ -275,20 +271,20 @@ } // import the batches - header = new String[] { - CarrouselRow.PROPERTY_FILE_ORIGIN, - CarrouselRow.PROPERTY_DATE, - CarrouselRow.PROPERTY_TIME, - CarrouselRow.PROPERTY_BALANCE_ID, - CarrouselRow.PROPERTY_TO_CONFIRM, - CarrouselRow.PROPERTY_OPERATION_CODE, - CarrouselRow.PROPERTY_RIG_NUMBER, - CarrouselRow.PROPERTY_BOX_TYPE, - CarrouselRow.PROPERTY_SPECIES_ID, - CarrouselRow.PROPERTY_SIGN, - CarrouselRow.PROPERTY_DIRECTION, - CarrouselRow.PROPERTY_WEIGHT - }; + header = new String[]{ + CarrouselRow.PROPERTY_FILE_ORIGIN, + CarrouselRow.PROPERTY_DATE, + CarrouselRow.PROPERTY_TIME, + CarrouselRow.PROPERTY_BALANCE_ID, + CarrouselRow.PROPERTY_TO_CONFIRM, + CarrouselRow.PROPERTY_OPERATION_CODE, + CarrouselRow.PROPERTY_RIG_NUMBER, + CarrouselRow.PROPERTY_BOX_TYPE, + CarrouselRow.PROPERTY_SPECIES_ID, + CarrouselRow.PROPERTY_SIGN, + CarrouselRow.PROPERTY_DIRECTION, + CarrouselRow.PROPERTY_WEIGHT + }; fileWithHeaders = createFileWithHeaders(carrouselFile, header, carrouselSeparator); reader = Files.newReader(fileWithHeaders, Charsets.UTF_8); carrouselImporter = Import.newImport(carrouselCsvModel, reader); @@ -302,7 +298,7 @@ for (CarrouselRow bean : carrouselImporter) { // is the bean from the current operation and rig ? if (bean.getOperationCode().equals(operationNumber) - && bean.getRigNumber().equals(rigNumber)) { + && bean.getRigNumber().equals(rigNumber)) { String speciesId = bean.getSpeciesId(); Species species = speciesMap.get(speciesId); @@ -316,7 +312,7 @@ sorted = false; break; - default : + default: sorted = true; carrouselSortedWeight += beanWeight; } @@ -345,7 +341,7 @@ Float catchWeight = pupitriCatch.getWeightBySign().get(PupitriCatch.Signs.DEFAULT); CaracteristicQualitativeValue cqv = pupitriCatch.isSorted() ? - sortedCaracteristic : unsortedCaracteristic; + sortedCaracteristic : unsortedCaracteristic; SpeciesBatch batch = new SpeciesBatch(); batch.setFishingOperation(operation); @@ -387,7 +383,7 @@ category = SampleCategoryEnum.size; break; } - + SpeciesBatch childBatch = new SpeciesBatch(); childBatch.setFishingOperation(operation); childBatch.setSampleCategoryType(category); @@ -413,7 +409,6 @@ IOUtils.closeQuietly(reader); FileUtils.deleteQuietly(fileWithHeaders); } - } public void exportSpecies(List<Species> species, File target) { @@ -426,7 +421,7 @@ public SpeciesRow apply(Species input) { Preconditions.checkNotNull(input.getSurveyCode(), - "Unable to export a species with a null survey code : " + input); + "Unable to export a species with a null survey code : " + input); SpeciesRow row = new SpeciesRow(); String codeFirstPart = StringUtils.substring(input.getSurveyCode(), 0, 4); row.setCodeFirstPart(StringUtils.rightPad(codeFirstPart, 4)); Modified: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/referential/TuttiReferentialImportExportServiceTest.java =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/referential/TuttiReferentialImportExportServiceTest.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/referential/TuttiReferentialImportExportServiceTest.java 2013-03-27 21:56:27 UTC (rev 694) @@ -43,10 +43,10 @@ import org.junit.Rule; import org.junit.Test; import org.junit.rules.TestName; -import org.nuiton.util.config.ApplicationConfig; import org.nuiton.util.FileUtil; import org.nuiton.util.beans.Binder; import org.nuiton.util.beans.BinderFactory; +import org.nuiton.util.config.ApplicationConfig; import java.io.File; import java.util.List; Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/ImportTemporaryReferentialAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/ImportTemporaryReferentialAction.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/ImportTemporaryReferentialAction.java 2013-03-27 21:56:27 UTC (rev 694) @@ -28,8 +28,8 @@ import org.apache.commons.lang.StringUtils; import org.springframework.util.DigestUtils; -import javax.swing.*; -import java.security.MessageDigest; +import javax.swing.JOptionPane; +import javax.swing.SwingUtilities; import static org.nuiton.i18n.I18n._; Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/config/SampleOrderEditorUIHandler.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/config/SampleOrderEditorUIHandler.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/config/SampleOrderEditorUIHandler.java 2013-03-27 21:56:27 UTC (rev 694) @@ -164,7 +164,7 @@ if (e.getKeyCode() == KeyEvent.VK_DOWN) { - if (selectedIndex < listModel.size() ) { + if (selectedIndex < listModel.size()) { // can move to down newSelectedIndex = selectedIndex - 1; Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/CloneProtocolAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/CloneProtocolAction.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/CloneProtocolAction.java 2013-03-27 21:56:27 UTC (rev 694) @@ -61,7 +61,7 @@ TuttiProtocol protocol = getContext().getPersistenceService().getProtocol(getContext().getProtocolId()); // remove id - protocol.setId(null); + protocol.setId((String) null); // store protocol in context CLONE_PROTOCOL_ENTRY.setContextValue(getContext().getMainUI(), protocol); Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/ImportProtocolAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/ImportProtocolAction.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/ImportProtocolAction.java 2013-03-27 21:56:27 UTC (rev 694) @@ -103,7 +103,7 @@ IMPORT_PROTOCOL_ENTRY.setContextValue(getContext().getMainUI(), protocol); // remove id - protocol.setId(null); + protocol.setId((String) null); // removed selected protocol getContext().setProtocolId(null); Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/EditFishingOperationAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/EditFishingOperationAction.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/EditFishingOperationAction.java 2013-03-27 21:56:27 UTC (rev 694) @@ -532,7 +532,7 @@ Integer objectId = Integer.valueOf(batch.getId()); attachments = persistenceService.getAllAttachments(objectId); getModel().setCatchEnabled(true); - + } catch (InvalidBatchModelException e) { // batch is not compatible with Tutti @@ -565,7 +565,7 @@ // 4) Propagate new selected fishingoperation to others tabs - ui.getSpeciesTabContent().getHandler().selectFishingOperation(batch == null ? null : bean); + ui.getSpeciesTabContent().getHandler().selectFishingOperation(batch == null ? null : bean); ui.getBenthosTabContent().getHandler().selectFishingOperation(batch == null ? null : bean); // ui.getPlanktonTabContent().getHandler().selectFishingOperation(bean); // ui.getMacroWasteTabContent().getHandler().selectFishingOperation(bean); Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/EditFishingOperationUIModel.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/EditFishingOperationUIModel.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/EditFishingOperationUIModel.java 2013-03-27 21:56:27 UTC (rev 694) @@ -60,7 +60,7 @@ * @since 0.1 */ public class EditFishingOperationUIModel extends AbstractTuttiBeanUIModel<FishingOperation, EditFishingOperationUIModel> - implements AttachmentModelAware, TabContentModel { + implements AttachmentModelAware, TabContentModel { private static final long serialVersionUID = 1L; @@ -227,20 +227,20 @@ public boolean isEmpty() { return StringUtils.isEmpty(stationNumber) - && fishingOperationNumber == null - && strata == null - && subStrata == null - && location == null - && gearShootingStartLatitudeAsSexagecimal.isNull() - && gearShootingStartLongitudeAsSexagecimal.isNull() - && gearShootingStartDate == null - && gearShootingEndLatitudeAsSexagecimal.isNull() - && gearShootingEndLongitudeAsSexagecimal.isNull() - && gearShootingEndDate == null - && recorderPerson == null - && gear == null - && StringUtils.isEmpty(comment) - && CollectionUtils.isEmpty(getAttachment()); + && fishingOperationNumber == null + && strata == null + && subStrata == null + && location == null + && gearShootingStartLatitudeAsSexagecimal.isNull() + && gearShootingStartLongitudeAsSexagecimal.isNull() + && gearShootingStartDate == null + && gearShootingEndLatitudeAsSexagecimal.isNull() + && gearShootingEndLongitudeAsSexagecimal.isNull() + && gearShootingEndDate == null + && recorderPerson == null + && gear == null + && StringUtils.isEmpty(comment) + && CollectionUtils.isEmpty(getAttachment()); // TODO add the otehr ones } Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/FishingOperationsUIHandler.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/FishingOperationsUIHandler.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/FishingOperationsUIHandler.java 2013-03-27 21:56:27 UTC (rev 694) @@ -148,8 +148,8 @@ } editFishingOperationAction.setFishingOperation(operation); // try { - AbstractTuttiAction.runAction(editFishingOperationAction); - + AbstractTuttiAction.runAction(editFishingOperationAction); + // } catch(RuntimeException e) { // getModel().setSelectedFishingOperation(null); //// throw e; Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/FishingOperationsUIModel.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/FishingOperationsUIModel.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/FishingOperationsUIModel.java 2013-03-27 21:56:27 UTC (rev 694) @@ -53,6 +53,7 @@ public static final String PROPERTY_SELECTED_FISHING_OPERATION = "selectedFishingOperation"; public static final String PROPERTY_EDITED_FISHING_OPERATION = "editedFishingOperation"; + public static final String PROPERTY_CATCH_ENABLED = "catchEnabled"; /** @@ -109,6 +110,7 @@ /** * Flag to use or not catch tab. + * * @since 1.1 */ protected boolean catchEnabled; Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/CancelEditCatchBatchAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/CancelEditCatchBatchAction.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/CancelEditCatchBatchAction.java 2013-03-27 21:56:27 UTC (rev 694) @@ -60,8 +60,8 @@ public EditFishingOperationAction getEditAction() { if (editAction == null) { - editAction = TuttiActionHelper.createLogicAction( getHandler().getParentHandler(), - EditFishingOperationAction.class); + editAction = TuttiActionHelper.createLogicAction(getHandler().getParentHandler(), + EditFishingOperationAction.class); } return editAction; } Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/EditCatchesUIModel.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/EditCatchesUIModel.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/EditCatchesUIModel.java 2013-03-27 21:56:27 UTC (rev 694) @@ -646,8 +646,8 @@ @Override public boolean isEmpty() { return getCatchTotalWeight() == null - && getCatchTotalRejectedWeight() == null - && CollectionUtils.isEmpty(getAttachment()); + && getCatchTotalRejectedWeight() == null + && CollectionUtils.isEmpty(getAttachment()); } @Override Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ImportPupitriAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ImportPupitriAction.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ImportPupitriAction.java 2013-03-27 21:56:27 UTC (rev 694) @@ -24,26 +24,13 @@ * #L% */ -import com.google.common.collect.Lists; -import fr.ifremer.tutti.persistence.entities.data.Attachment; import fr.ifremer.tutti.persistence.entities.data.CatchBatch; import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.SampleCategoryEnum; -import fr.ifremer.tutti.persistence.entities.data.SexEnum; -import fr.ifremer.tutti.persistence.entities.data.SizeEnum; -import fr.ifremer.tutti.persistence.entities.data.SortedUnsortedEnum; import fr.ifremer.tutti.persistence.entities.protocol.TuttiProtocol; -import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; -import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; -import fr.ifremer.tutti.persistence.entities.referential.Species; import fr.ifremer.tutti.service.PersistenceService; -import fr.ifremer.tutti.service.pupitri.PupitriCatch; import fr.ifremer.tutti.service.pupitri.TuttiPupitriImportExportService; import fr.ifremer.tutti.ui.swing.content.operation.EditFishingOperationAction; -import fr.ifremer.tutti.ui.swing.content.operation.catches.species.SpeciesBatchRowModel; -import fr.ifremer.tutti.ui.swing.content.operation.catches.species.SpeciesBatchUIHandler; import fr.ifremer.tutti.ui.swing.content.operation.catches.species.SpeciesBatchUIModel; -import fr.ifremer.tutti.ui.swing.content.operation.catches.species.split.SplitSpeciesBatchRowModel; import fr.ifremer.tutti.ui.swing.util.AbstractTuttiUIHandler; import fr.ifremer.tutti.ui.swing.util.action.AbstractTuttiAction; import fr.ifremer.tutti.ui.swing.util.action.TuttiActionHelper; @@ -52,7 +39,6 @@ import javax.swing.JOptionPane; import java.io.File; -import java.util.List; import static org.nuiton.i18n.I18n._; @@ -86,22 +72,21 @@ public EditFishingOperationAction getEditAction() { if (editAction == null) { - editAction = TuttiActionHelper.createLogicAction( getHandler().getParentHandler(), - EditFishingOperationAction.class); + editAction = TuttiActionHelper.createLogicAction(getHandler().getParentHandler(), + EditFishingOperationAction.class); } return editAction; } @Override protected boolean prepareAction() throws Exception { - boolean result = true; + boolean result; if (!getContext().isProtocolFilled()) { result = false; } else { - String protocolId = getContext().getProtocolId(); - currentProtocol = persistenceService.getProtocol(protocolId); + currentProtocol = getDataContext().getProtocol(); result = currentProtocol != null && !currentProtocol.getSpecies().isEmpty(); } @@ -133,7 +118,7 @@ importedTrunkFile = importPupitriDialog.getTrunkFile().getSelectedFile(); importedCarrouselFile = importPupitriDialog.getCarrouselFile().getSelectedFile(); importedSpeciesFile = importPupitriDialog.getSpeciesFile().getSelectedFile(); - result = importedTrunkFile != null + result = importedTrunkFile != null && importedCarrouselFile != null && importedSpeciesFile != null; } @@ -158,7 +143,7 @@ operation, catchBatch, getDataContext().getReferentSpeciesWithSurveyCode()); - + String fishingOperationText = getEditAction().getFishingOperationTitle(operation); getEditAction().loadCatchBatch(operation, fishingOperationText, true); Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ImportPupitriPopupUI.jaxx =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ImportPupitriPopupUI.jaxx 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ImportPupitriPopupUI.jaxx 2013-03-27 21:56:27 UTC (rev 694) @@ -58,7 +58,7 @@  <ImportPupitriPopupUIHandler id='handler' - initializer='getContextValue(ImportPupitriPopupUIHandler.class)'/> + initializer='getContextValue(ImportPupitriPopupUIHandler.class)'/> <Table id='mainPanel' fill='both'> @@ -99,5 +99,5 @@ </row> </Table> - + </JDialog> \ No newline at end of file Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ImportPupitriPopupUIHandler.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ImportPupitriPopupUIHandler.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ImportPupitriPopupUIHandler.java 2013-03-27 21:56:27 UTC (rev 694) @@ -25,11 +25,11 @@ */ import fr.ifremer.tutti.ui.swing.TuttiUIContext; +import jaxx.runtime.SwingUtil; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; import javax.swing.JOptionPane; -import jaxx.runtime.SwingUtil; import static org.nuiton.i18n.I18n._; @@ -49,7 +49,7 @@ protected final TuttiUIContext context; public ImportPupitriPopupUIHandler(TuttiUIContext context, - ImportPupitriPopupUI ui) { + ImportPupitriPopupUI ui) { this.context = context; this.ui = ui; } @@ -83,8 +83,8 @@ public void validate() { if (ui.getTrunkFile().getSelectedFile() != null - && ui.getCarrouselFile().getSelectedFile() != null - && ui.getSpeciesFile().getSelectedFile() != null) { + && ui.getCarrouselFile().getSelectedFile() != null + && ui.getSpeciesFile().getSelectedFile() != null) { ui.dispose(); } else { Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/SampleCategoryComponent.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/SampleCategoryComponent.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/SampleCategoryComponent.java 2013-03-27 21:56:27 UTC (rev 694) @@ -123,7 +123,7 @@ } String label = sampleCategory == null ? "-" : - categoryDecorator.toString(categoryValue); + categoryDecorator.toString(categoryValue); editorLabel.setText(label); return editor; Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/benthos/BenthosBatchUIModel.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/benthos/BenthosBatchUIModel.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/benthos/BenthosBatchUIModel.java 2013-03-27 21:56:27 UTC (rev 694) @@ -46,7 +46,7 @@ * @since 0.1 */ public class BenthosBatchUIModel extends AbstractTuttiBatchUIModel<BenthosBatchRowModel, BenthosBatchUIModel> - implements AttachmentModelAware, TabContentModel { + implements AttachmentModelAware, TabContentModel { private static final long serialVersionUID = 1L; @@ -388,10 +388,10 @@ @Override public boolean isEmpty() { return CollectionUtils.isEmpty(getRows()) - && getBenthosTotalSortedWeight() == null - && getBenthosTotalInertWeight() == null - && getBenthosTotalLivingNotItemizedWeight() == null - && CollectionUtils.isEmpty(getAttachment()); + && getBenthosTotalSortedWeight() == null + && getBenthosTotalInertWeight() == null + && getBenthosTotalLivingNotItemizedWeight() == null + && CollectionUtils.isEmpty(getAttachment()); } @Override Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/benthos/frequency/BenthosFrequencyCellComponent.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/benthos/frequency/BenthosFrequencyCellComponent.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/benthos/frequency/BenthosFrequencyCellComponent.java 2013-03-27 21:56:27 UTC (rev 694) @@ -31,9 +31,6 @@ import fr.ifremer.tutti.ui.swing.content.operation.catches.benthos.BenthosBatchRowModel; import fr.ifremer.tutti.ui.swing.content.operation.catches.benthos.BenthosBatchTableModel; import fr.ifremer.tutti.ui.swing.content.operation.catches.benthos.BenthosBatchUI; -import fr.ifremer.tutti.ui.swing.content.operation.catches.species.SpeciesBatchTableModel; -import fr.ifremer.tutti.ui.swing.content.operation.catches.species.frequency.SpeciesFrequencyRowModel; -import fr.ifremer.tutti.ui.swing.content.operation.catches.species.frequency.SpeciesFrequencyUIModel; import fr.ifremer.tutti.ui.swing.util.TuttiComputedOrNotData; import fr.ifremer.tutti.ui.swing.util.table.AbstractSelectTableAction; import fr.ifremer.tutti.ui.swing.util.table.ColumnIdentifier; Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/benthos/frequency/BenthosFrequencyUI.jaxx =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/benthos/frequency/BenthosFrequencyUI.jaxx 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/benthos/frequency/BenthosFrequencyUI.jaxx 2013-03-27 21:56:27 UTC (rev 694) @@ -197,8 +197,10 @@ <Table constraints='"noLengthCaracteristicPmfm"' fill='horizontal'> <row> <cell columns='2'> - <JPanel id='dataInFrequenciesWarningContainer' layout='{new BorderLayout(10, 10)}'> - <JLabel id='dataInFrequenciesWarning' constraints='BorderLayout.CENTER'/> + <JPanel id='dataInFrequenciesWarningContainer' + layout='{new BorderLayout(10, 10)}'> + <JLabel id='dataInFrequenciesWarning' + constraints='BorderLayout.CENTER'/> </JPanel> </cell> </row> Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/benthos/frequency/BenthosFrequencyUIHandler.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/benthos/frequency/BenthosFrequencyUIHandler.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/benthos/frequency/BenthosFrequencyUIHandler.java 2013-03-27 21:56:27 UTC (rev 694) @@ -37,7 +37,6 @@ import fr.ifremer.tutti.ui.swing.content.operation.catches.EditCatchesUI; import fr.ifremer.tutti.ui.swing.content.operation.catches.EditCatchesUIHandler; import fr.ifremer.tutti.ui.swing.content.operation.catches.benthos.BenthosBatchRowModel; -import fr.ifremer.tutti.ui.swing.content.operation.catches.species.SpeciesBatchRowModel; import fr.ifremer.tutti.ui.swing.util.Cancelable; import fr.ifremer.tutti.ui.swing.util.TuttiBeanMonitor; import fr.ifremer.tutti.ui.swing.util.TuttiUI; Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/RemoveSpeciesSubBatchAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/RemoveSpeciesSubBatchAction.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/RemoveSpeciesSubBatchAction.java 2013-03-27 21:56:27 UTC (rev 694) @@ -79,7 +79,7 @@ handler.collectChildren(parentBatch, rowToRemove); table.clearSelection(); - + // remove all rows from the model getModel().getRows().removeAll(rowToRemove); Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/SpeciesBatchUIHandler.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/SpeciesBatchUIHandler.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/SpeciesBatchUIHandler.java 2013-03-27 21:56:27 UTC (rev 694) @@ -50,7 +50,6 @@ import fr.ifremer.tutti.ui.swing.content.operation.catches.species.frequency.SpeciesFrequencyRowModel; import fr.ifremer.tutti.ui.swing.content.operation.catches.species.split.SplitSpeciesBatchRowModel; import fr.ifremer.tutti.ui.swing.content.operation.catches.species.split.SplitSpeciesBatchUI; -import fr.ifremer.tutti.ui.swing.util.TabHandler; import fr.ifremer.tutti.ui.swing.util.TuttiBeanMonitor; import fr.ifremer.tutti.ui.swing.util.TuttiUI; import fr.ifremer.tutti.ui.swing.util.TuttiUIUtil; @@ -640,7 +639,7 @@ recomputeRowValidState(newRow); saveRow(newRow); - + tableModel.addNewRow(newRow); AbstractSelectTableAction.doSelectCell(getTable(), tableModel.getRowCount() - 1, 0); @@ -734,7 +733,7 @@ parentBatch.setChildBatch(newBatches); //TODO Should only save parentBatch (will persist all his childs) - //saveRow(parentBatch); + //saveRow(parentBatch); // save new batches saveRows(newBatches); Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/SpeciesBatchUIModel.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/SpeciesBatchUIModel.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/SpeciesBatchUIModel.java 2013-03-27 21:56:27 UTC (rev 694) @@ -46,7 +46,7 @@ * @since 0.1 */ public class SpeciesBatchUIModel extends AbstractTuttiBatchUIModel<SpeciesBatchRowModel, SpeciesBatchUIModel> - implements AttachmentModelAware, TabContentModel { + implements AttachmentModelAware, TabContentModel { private static final long serialVersionUID = 1L; @@ -388,10 +388,10 @@ @Override public boolean isEmpty() { return CollectionUtils.isEmpty(getRows()) - && getSpeciesTotalSortedWeight() == null - && getSpeciesTotalInertWeight() == null - && getSpeciesTotalLivingNotItemizedWeight() == null - && CollectionUtils.isEmpty(getAttachment()); + && getSpeciesTotalSortedWeight() == null + && getSpeciesTotalInertWeight() == null + && getSpeciesTotalLivingNotItemizedWeight() == null + && CollectionUtils.isEmpty(getAttachment()); } @Override Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/frequency/SpeciesFrequencyUI.jaxx =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/frequency/SpeciesFrequencyUI.jaxx 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/frequency/SpeciesFrequencyUI.jaxx 2013-03-27 21:56:27 UTC (rev 694) @@ -197,8 +197,10 @@ <Table constraints='"noLengthCaracteristicPmfm"' fill='horizontal'> <row> <cell columns='2'> - <JPanel id='dataInFrequenciesWarningContainer' layout='{new BorderLayout(10, 10)}'> - <JLabel id='dataInFrequenciesWarning' constraints='BorderLayout.CENTER'/> + <JPanel id='dataInFrequenciesWarningContainer' + layout='{new BorderLayout(10, 10)}'> + <JLabel id='dataInFrequenciesWarning' + constraints='BorderLayout.CENTER'/> </JPanel> </cell> </row> Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/split/SplitSpeciesBatchRowModel.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/split/SplitSpeciesBatchRowModel.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/split/SplitSpeciesBatchRowModel.java 2013-03-27 21:56:27 UTC (rev 694) @@ -28,8 +28,6 @@ import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; import fr.ifremer.tutti.ui.swing.content.operation.catches.SampleCategory; import fr.ifremer.tutti.ui.swing.util.AbstractTuttiBeanUIModel; -import org.nuiton.util.beans.Binder; -import org.nuiton.util.beans.BinderFactory; import java.io.Serializable; Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/split/SplitSpeciesBatchUIHandler.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/split/SplitSpeciesBatchUIHandler.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/split/SplitSpeciesBatchUIHandler.java 2013-03-27 21:56:27 UTC (rev 694) @@ -303,8 +303,8 @@ SplitSpeciesBatchUIModel model = getModel(); if (model.isValid()) { parent.getSpeciesTabContent().getHandler().splitBatch( - model.getSelectedCategory(), - model.getRows()); + model.getSelectedCategory(), + model.getRows()); } // close dialog Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/fishing/AbstractCaracteristicTabUIModel.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/fishing/AbstractCaracteristicTabUIModel.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/fishing/AbstractCaracteristicTabUIModel.java 2013-03-27 21:56:27 UTC (rev 694) @@ -25,7 +25,6 @@ * #L% */ -import com.google.common.collect.Lists; import com.google.common.collect.Sets; import fr.ifremer.tutti.persistence.entities.CaracteristicMap; import fr.ifremer.tutti.persistence.entities.data.FishingOperation; @@ -38,8 +37,6 @@ import java.util.List; import java.util.Set; -import org.apache.commons.collections.CollectionUtils; - /** * @author kmorin <kmorin(a)codelutin.com> * @since 1.0 Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/protocol/ExportPupitriAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/protocol/ExportPupitriAction.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/protocol/ExportPupitriAction.java 2013-03-27 21:56:27 UTC (rev 694) @@ -27,9 +27,7 @@ import com.google.common.base.Preconditions; import com.google.common.collect.Lists; import fr.ifremer.tutti.TuttiIOUtil; -import fr.ifremer.tutti.persistence.entities.protocol.SpeciesProtocol; import fr.ifremer.tutti.persistence.entities.referential.Species; -import fr.ifremer.tutti.service.protocol.TuttiProtocolImportExportService; import fr.ifremer.tutti.service.pupitri.TuttiPupitriImportExportService; import fr.ifremer.tutti.ui.swing.util.TuttiUIUtil; import fr.ifremer.tutti.ui.swing.util.action.AbstractTuttiAction; Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/AbstractTuttiUIHandler.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/AbstractTuttiUIHandler.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/AbstractTuttiUIHandler.java 2013-03-27 21:56:27 UTC (rev 694) @@ -367,7 +367,7 @@ Component result; TuttiActionUI actionUI = getContext().getActionUI(); // if (actionUI.isVisible()) { - result = actionUI; + result = actionUI; // } else { // result = getContext().getMainUI(); // } Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/CustomTab.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/CustomTab.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/CustomTab.java 2013-03-27 21:56:27 UTC (rev 694) @@ -26,20 +26,18 @@ */ import jaxx.runtime.SwingUtil; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.nuiton.util.beans.BeanUtil; import javax.swing.JLabel; import javax.swing.JPanel; +import javax.swing.UIManager; import java.awt.Color; import java.awt.Font; import java.beans.PropertyChangeEvent; import java.beans.PropertyChangeListener; import java.lang.reflect.InvocationTargetException; -import javax.swing.UIManager; -import jaxx.runtime.JAXXUtil; -import org.apache.commons.beanutils.MethodUtils; -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; -import org.nuiton.util.beans.BeanUtil; import static org.nuiton.i18n.I18n._; @@ -74,11 +72,11 @@ public void propertyChange(PropertyChangeEvent evt) { updateTitle(); } - },this.model); - - } catch (NoSuchMethodException - | IllegalAccessException - | InvocationTargetException ex) { + }, this.model); + + } catch (NoSuchMethodException + | IllegalAccessException + | InvocationTargetException ex) { log.error("Error while adding the listener to the model modifications", ex); } Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/TabContentModel.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/TabContentModel.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/TabContentModel.java 2013-03-27 21:56:27 UTC (rev 694) @@ -2,7 +2,7 @@ /** * Interface defining the models of the tab content UIs. - * + * * @author kmorin <kmorin(a)codelutin.com> * @since 1.2 */ @@ -11,7 +11,7 @@ boolean isEmpty(); boolean isValid(); - + boolean isModify(); String getTitle(); Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/comment/CommentModelAware.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/comment/CommentModelAware.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/comment/CommentModelAware.java 2013-03-27 21:56:27 UTC (rev 694) @@ -32,7 +32,7 @@ */ public interface CommentModelAware { - String PROPERTY_COMMENT= "comment"; + String PROPERTY_COMMENT = "comment"; String getComment(); Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/editor/TuttiComputedOrNotDataEditorHandler.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/editor/TuttiComputedOrNotDataEditorHandler.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/editor/TuttiComputedOrNotDataEditorHandler.java 2013-03-27 21:56:27 UTC (rev 694) @@ -40,7 +40,6 @@ import java.beans.PropertyChangeEvent; import java.beans.PropertyChangeListener; import java.text.DecimalFormat; -import org.apache.commons.lang3.StringUtils; /** * @author kmorin <kmorin(a)codelutin.com> Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/editor/TuttiComputedOrNotDataTableCell.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/editor/TuttiComputedOrNotDataTableCell.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/editor/TuttiComputedOrNotDataTableCell.java 2013-03-27 21:56:27 UTC (rev 694) @@ -45,7 +45,6 @@ import java.awt.event.FocusEvent; import java.awt.event.FocusListener; import java.text.DecimalFormat; -import org.apache.commons.lang3.StringUtils; /** * Editor for TuttiComputedOrNotData Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/table/CaracteristicRow.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/table/CaracteristicRow.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/table/CaracteristicRow.java 2013-03-27 21:56:27 UTC (rev 694) @@ -24,8 +24,8 @@ * #L% */ +import fr.ifremer.tutti.LabelAware; import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; -import fr.ifremer.tutti.LabelAware; /** * @author kmorin <kmorin(a)codelutin.com> Modified: trunk/tutti-ui-swing/src/test/java/fr/ifremer/tutti/ui/swing/BeanValidatorDetectorTest.java =================================================================== --- trunk/tutti-ui-swing/src/test/java/fr/ifremer/tutti/ui/swing/BeanValidatorDetectorTest.java 2013-03-27 21:49:05 UTC (rev 693) +++ trunk/tutti-ui-swing/src/test/java/fr/ifremer/tutti/ui/swing/BeanValidatorDetectorTest.java 2013-03-27 21:56:27 UTC (rev 694) @@ -26,11 +26,9 @@ import fr.ifremer.tutti.ui.swing.content.cruise.EditCruiseUIModel; import fr.ifremer.tutti.ui.swing.content.operation.EditFishingOperationUIModel; -import fr.ifremer.tutti.ui.swing.content.operation.catches.EditCatchesUIModel; import fr.ifremer.tutti.ui.swing.content.operation.catches.benthos.create.CreateBenthosBatchUIModel; import fr.ifremer.tutti.ui.swing.content.operation.catches.benthos.frequency.BenthosFrequencyUIModel; import fr.ifremer.tutti.ui.swing.content.operation.catches.benthos.split.SplitBenthosBatchUIModel; -import fr.ifremer.tutti.ui.swing.content.operation.catches.species.SpeciesBatchUIModel; import fr.ifremer.tutti.ui.swing.content.operation.catches.species.create.CreateSpeciesBatchUIModel; import fr.ifremer.tutti.ui.swing.content.operation.catches.species.frequency.SpeciesFrequencyUIModel; import fr.ifremer.tutti.ui.swing.content.operation.catches.species.split.SplitSpeciesBatchUIModel;

1 0

r693 - in trunk/tutti-persistence/src: main/java/fr/ifremer/tutti/persistence main/java/fr/ifremer/tutti/persistence/entities main/java/fr/ifremer/tutti/persistence/service main/java/fr/ifremer/tutti/persistence/service/batch test/java/fr/ifremer/tutti/persistence/service test/resources
by tchemit＠users.forge.codelutin.com March 27, 2013

March 27, 2013

Author: tchemit Date: 2013-03-27 22:49:05 +0100 (Wed, 27 Mar 2013) New Revision: 693 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/693 Log: - fixes #2161: [ESPECES] affichage d'un nombre d'individus sur un lot p?\195?\168re avec des fils - ajout de m?\195?\169thodes pour manipuler les id en tant que Integer - resplit des service comme au d?\195?\169but : CatchBatchPS, SpeciesBatchPS, BenthosBatchPS (c'est plus simple) - nettoyage du code de persistence Added: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceService.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceService.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceService.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/BatchPersistenceHelper.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceReadTest.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceWriteTest.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceReadTest.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceWriteTest.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceReadTest.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceWriteTest.java Removed: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceService.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceImpl.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceReadTest.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceWriteTest.java Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/AbstractTuttiEntity.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiPersistenceServiceLocator.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/ScientificCruiseCatchBatchValidator.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/CruisePersistenceServiceWriteTest.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/FishingOperationPersistenceServiceWriteTest.java trunk/tutti-persistence/src/test/resources/log4j.properties Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java 2013-03-27 21:44:37 UTC (rev 692) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java 2013-03-27 21:49:05 UTC (rev 693) @@ -49,7 +49,8 @@ import fr.ifremer.tutti.persistence.entities.referential.Vessel; import fr.ifremer.tutti.persistence.service.AccidentalBatchPersistenceService; import fr.ifremer.tutti.persistence.service.AttachmentPersistenceService; -import fr.ifremer.tutti.persistence.service.BatchPersistenceService; +import fr.ifremer.tutti.persistence.service.CatchBatchPersistenceService; +import fr.ifremer.tutti.persistence.service.BenthosBatchPersistenceService; import fr.ifremer.tutti.persistence.service.CruisePersistenceService; import fr.ifremer.tutti.persistence.service.FishingOperationPersistenceService; import fr.ifremer.tutti.persistence.service.MacroWasteBatchPersistenceService; @@ -57,6 +58,7 @@ import fr.ifremer.tutti.persistence.service.ProgramPersistenceService; import fr.ifremer.tutti.persistence.service.ProtocolPersistenceService; import fr.ifremer.tutti.persistence.service.ReferentialPersistenceService; +import fr.ifremer.tutti.persistence.service.SpeciesBatchPersistenceService; import fr.ifremer.tutti.persistence.service.TuttiPersistenceServiceLocator; import org.apache.commons.lang3.StringUtils; import org.apache.commons.logging.Log; @@ -91,9 +93,15 @@ protected FishingOperationPersistenceService fishingOperationService; @Autowired - protected BatchPersistenceService batchService; + protected CatchBatchPersistenceService catchBatchService; @Autowired + protected SpeciesBatchPersistenceService speciesBatchService; + + @Autowired + protected BenthosBatchPersistenceService benthosBatchService; + + @Autowired protected PlanktonBatchPersistenceService planktonBatchService; @Autowired @@ -130,7 +138,9 @@ programService.init(); cruiseService.init(); fishingOperationService.init(); - batchService.init(); + catchBatchService.init(); + speciesBatchService.init(); + benthosBatchService.init(); planktonBatchService.init(); macroWasteBatchService.init(); accidentalBatchService.init(); @@ -148,7 +158,9 @@ programService.close(); cruiseService.close(); fishingOperationService.close(); - batchService.close(); + catchBatchService.close(); + speciesBatchService.close(); + benthosBatchService.close(); planktonBatchService.close(); macroWasteBatchService.close(); accidentalBatchService.close(); @@ -506,7 +518,7 @@ @Override public CatchBatch getCatchBatchFromFishingOperation(String id) throws InvalidBatchModelException { try { - return batchService.getCatchBatchFromFishingOperation(id); + return catchBatchService.getCatchBatchFromFishingOperation(id); } catch (CatchBatchValidationException e) { throw new InvalidBatchModelException( "L'arbre d'échantillonage n'est pas compatible avec celui de Tutti.", e); @@ -515,12 +527,12 @@ @Override public CatchBatch createCatchBatch(CatchBatch bean) { - return batchService.createCatchBatch(bean); + return catchBatchService.createCatchBatch(bean); } @Override public CatchBatch saveCatchBatch(CatchBatch bean) { - return batchService.saveCatchBatch(bean); + return catchBatchService.saveCatchBatch(bean); } //------------------------------------------------------------------------// @@ -529,42 +541,42 @@ @Override public BatchContainer<SpeciesBatch> getRootSpeciesBatch(String fishingOperationId) { - return batchService.getRootSpeciesBatch(fishingOperationId); + return speciesBatchService.getRootSpeciesBatch(fishingOperationId); } @Override public SpeciesBatch createSpeciesBatch(SpeciesBatch bean, String parentBatchId) { - return batchService.createSpeciesBatch(bean, parentBatchId); + return speciesBatchService.createSpeciesBatch(bean, parentBatchId); } @Override public SpeciesBatch saveSpeciesBatch(SpeciesBatch bean) { - return batchService.saveSpeciesBatch(bean); + return speciesBatchService.saveSpeciesBatch(bean); } @Override public void deleteSpeciesBatch(String id) { - batchService.deleteSpeciesBatch(id); + speciesBatchService.deleteSpeciesBatch(id); } @Override public void deleteSpeciesSubBatch(String id) { - batchService.deleteSpeciesSubBatch(id); + speciesBatchService.deleteSpeciesSubBatch(id); } @Override public void changeSpeciesBatchSpecies(String batchId, Species species) { - batchService.changeSpeciesBatchSpecies(batchId, species); + speciesBatchService.changeSpeciesBatchSpecies(batchId, species); } @Override public List<SpeciesBatchFrequency> getAllSpeciesBatchFrequency(String speciesBatchId) { - return batchService.getAllSpeciesBatchFrequency(speciesBatchId); + return speciesBatchService.getAllSpeciesBatchFrequency(speciesBatchId); } @Override public List<SpeciesBatchFrequency> saveSpeciesBatchFrequency(String speciesBatchId, List<SpeciesBatchFrequency> frequencies) { - return batchService.saveSpeciesBatchFrequency(speciesBatchId, frequencies); + return speciesBatchService.saveSpeciesBatchFrequency(speciesBatchId, frequencies); } //------------------------------------------------------------------------// @@ -573,43 +585,43 @@ @Override public BatchContainer<SpeciesBatch> getRootBenthosBatch(String fishingOperationId) { - return batchService.getRootBenthosBatch(fishingOperationId); + return benthosBatchService.getRootBenthosBatch(fishingOperationId); } @Override public SpeciesBatch createBenthosBatch(SpeciesBatch bean, String parentBatchId) { - return batchService.createBenthosBatch(bean, parentBatchId); + return benthosBatchService.createBenthosBatch(bean, parentBatchId); } @Override public SpeciesBatch saveBenthosBatch(SpeciesBatch bean) { - return batchService.saveBenthosBatch(bean); + return benthosBatchService.saveBenthosBatch(bean); } @Override public void deleteBenthosBatch(String id) { - batchService.deleteBenthosBatch(id); + benthosBatchService.deleteBenthosBatch(id); } @Override public void deleteBenthosSubBatch(String id) { - batchService.deleteBenthosSubBatch(id); + benthosBatchService.deleteBenthosSubBatch(id); } @Override public void changeBenthosBatchSpecies(String batchId, Species species) { - batchService.changeBenthosBatchSpecies(batchId, species); + benthosBatchService.changeBenthosBatchSpecies(batchId, species); } @Override public List<SpeciesBatchFrequency> getAllBenthosBatchFrequency(String benthosBatchId) { - return batchService.getAllBenthosBatchFrequency(benthosBatchId); + return benthosBatchService.getAllBenthosBatchFrequency(benthosBatchId); } @Override public List<SpeciesBatchFrequency> saveBenthosBatchFrequency(String benthosBatchId, List<SpeciesBatchFrequency> frequencies) { - return batchService.saveBenthosBatchFrequency(benthosBatchId, frequencies); + return benthosBatchService.saveBenthosBatchFrequency(benthosBatchId, frequencies); } //------------------------------------------------------------------------// Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/AbstractTuttiEntity.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/AbstractTuttiEntity.java 2013-03-27 21:44:37 UTC (rev 692) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/AbstractTuttiEntity.java 2013-03-27 21:49:05 UTC (rev 693) @@ -45,6 +45,8 @@ protected String id; + protected Integer intId; + @Override public String getId() { return id; @@ -53,8 +55,21 @@ @Override public void setId(String id) { this.id = id; + intId = null; } + public void setId(Integer id) { + intId = id; + this.id = id == null ? null : String.valueOf(id); + } + + public Integer getIdAsInt() { + if (intId == null && id != null) { + intId = Integer.valueOf(id); + } + return intId; + } + protected B getChild(Collection child, int index) { return CollectionUtil.getOrNull(child, index); } Deleted: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceService.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceService.java 2013-03-27 21:44:37 UTC (rev 692) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceService.java 2013-03-27 21:49:05 UTC (rev 693) @@ -1,208 +0,0 @@ -package fr.ifremer.tutti.persistence.service; - -/* - * #%L - * Tutti :: Persistence - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - - -import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidationException; -import fr.ifremer.tutti.persistence.TuttiPersistenceServiceImplementor; -import fr.ifremer.tutti.persistence.entities.data.BatchContainer; -import fr.ifremer.tutti.persistence.entities.data.CatchBatch; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import org.springframework.transaction.annotation.Transactional; - -import java.util.List; - -@Transactional(readOnly = true) -public interface BatchPersistenceService extends TuttiPersistenceServiceImplementor { - - //------------------------------------------------------------------------// - //-- CatchBatch methods --// - //------------------------------------------------------------------------// - - /** - * Get the catchBatch from the fishing Operation id. - * - * @param fishingOperationId id of the fihsing operation - * @return found catchBatch - * @throws CatchBatchValidationException - */ - CatchBatch getCatchBatchFromFishingOperation(String fishingOperationId) throws CatchBatchValidationException; - - /** - * Create the given CatchBatch and return it. - * - * @param bean catchBatch to create - * @return created catchBatch - */ - @Transactional(readOnly = false) - CatchBatch createCatchBatch(CatchBatch bean); - - /** - * Save the given catchBatch and return it. - * - * @param bean batch to save - * @return the saved catchBatch - */ - @Transactional(readOnly = false) - CatchBatch saveCatchBatch(CatchBatch bean); - - //------------------------------------------------------------------------// - //-- SpeciesBatch methods --// - //------------------------------------------------------------------------// - - /** - * Get the batch parent of all root {@link SpeciesBatch} for the given - * fishing operation. - * - * Note: All childs of the batch should be loaded here. - * - * @param fishingOperationId if of the fishing operation to seek - * @return the list of root {@link SpeciesBatch} - * @since 1.0.2 - */ - BatchContainer<SpeciesBatch> getRootSpeciesBatch(String fishingOperationId); - - @Transactional(readOnly = false) - SpeciesBatch createSpeciesBatch(SpeciesBatch bean, String parentBatchId); - - @Transactional(readOnly = false) - SpeciesBatch saveSpeciesBatch(SpeciesBatch bean); - - @Transactional(readOnly = false) - void deleteSpeciesBatch(String id); - - @Transactional(readOnly = false) - void deleteSpeciesSubBatch(String id); - - /** - * Change the species in the given {@code batchId} and in all his - * sub batches. - * - * @param batchId id of the root species batch to treat - * @param species species to affect to all batches - */ - @Transactional(readOnly = false) - void changeSpeciesBatchSpecies(String batchId, Species species); - - //------------------------------------------------------------------------// - //-- SpeciesBatchFrequency methods (for species) --// - //------------------------------------------------------------------------// - - /** - * Get all frequencies for the given species batch. - * - * @param speciesBatchId the id of the species batch to seek. - * @return the list of frequencies for the given specues batch id - * @since 1.0 - */ - List<SpeciesBatchFrequency> getAllSpeciesBatchFrequency(String speciesBatchId); - - /** - * Save all given {@link SpeciesBatchFrequency} into the given - * {@code speciesBatchId}. If some are not existing then creates them. - * - * Note: This will as a side effect remove all previous frequency for this species batch. - * - * @param speciesBatchId id of the {@link SpeciesBatch} to use - * @param frequencies list of frequencies to create or update - * @return the persisted list of frequencies - * @since 1.0 - */ - @Transactional(readOnly = false) - List<SpeciesBatchFrequency> saveSpeciesBatchFrequency(String speciesBatchId, - List<SpeciesBatchFrequency> frequencies); - - - //------------------------------------------------------------------------// - //-- Benthos Batch methods --// - //------------------------------------------------------------------------// - - /** - * Get all root {@link SpeciesBatch} for the given fishing operation. - * - * Note: All childs of the batch should be loaded here. - * - * - * @param fishingOperationId if of the fishing operation to seek - * @return the list of root {@link SpeciesBatch} - * @since 1.0 - */ - BatchContainer<SpeciesBatch> getRootBenthosBatch(String fishingOperationId); - - @Transactional(readOnly = false) - SpeciesBatch createBenthosBatch(SpeciesBatch bean, String parentBatchId); - - @Transactional(readOnly = false) - SpeciesBatch saveBenthosBatch(SpeciesBatch bean); - - @Transactional(readOnly = false) - void deleteBenthosBatch(String id); - - @Transactional(readOnly = false) - void deleteBenthosSubBatch(String id); - - /** - * Change the species in the given {@code batchId} and in all his - * sub batches. - * - * @param batchId id of the root Benthos batch to treat - * @param species species to affect to all batches - */ - @Transactional(readOnly = false) - void changeBenthosBatchSpecies(String batchId, Species species); - - //------------------------------------------------------------------------// - //-- SpeciesBatchFrequency methods (for benthos) --// - //------------------------------------------------------------------------// - - /** - * Get all frequencies for the given species batch. - * - * @param benthosBatchId the id of the species batch to seek. - * @return the list of frequencies for the given benthos batch id - * @since 1.0 - */ - List<SpeciesBatchFrequency> getAllBenthosBatchFrequency(String benthosBatchId); - - /** - * Save all given {@link SpeciesBatchFrequency} into the given - * {@code benthosBatchId}. If some are not existing then creates them. - * - * Note: This will as a side effect remove all previous - * frequency for this benthos batch. - * - * @param benthosBatchId id of the {@link SpeciesBatch} to use - * @param frequencies list of frequencies to create or update - * @return the persisted list of frequencies - * @since 1.0 - */ - @Transactional(readOnly = false) - List<SpeciesBatchFrequency> saveBenthosBatchFrequency(String benthosBatchId, - List<SpeciesBatchFrequency> frequencies); - - -} \ No newline at end of file Deleted: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceImpl.java 2013-03-27 21:44:37 UTC (rev 692) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceImpl.java 2013-03-27 21:49:05 UTC (rev 693) @@ -1,1630 +0,0 @@ -package fr.ifremer.tutti.persistence.service; - -/* - * #%L - * Tutti :: Persistence - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - - -import com.google.common.base.Preconditions; -import com.google.common.collect.Lists; -import fr.ifremer.adagio.core.dao.data.batch.Batch; -import fr.ifremer.adagio.core.dao.data.batch.CatchBatchExtendDao; -import fr.ifremer.adagio.core.dao.data.batch.SortingBatch; -import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidationException; -import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidator; -import fr.ifremer.adagio.core.dao.data.measure.Measurement; -import fr.ifremer.adagio.core.dao.data.measure.QuantificationMeasurement; -import fr.ifremer.adagio.core.dao.data.measure.SortingMeasurement; -import fr.ifremer.adagio.core.dao.data.operation.FishingOperationImpl; -import fr.ifremer.adagio.core.dao.referential.QualityFlagImpl; -import fr.ifremer.adagio.core.dao.referential.pmfm.QualitativeValue; -import fr.ifremer.adagio.core.dao.referential.pmfm.QualitativeValueImpl; -import fr.ifremer.adagio.core.dao.referential.taxon.ReferenceTaxon; -import fr.ifremer.adagio.core.dao.referential.taxon.ReferenceTaxonImpl; -import fr.ifremer.adagio.core.dao.technical.synchronization.SynchronizationStatus; -import fr.ifremer.tutti.persistence.entities.data.BatchContainer; -import fr.ifremer.tutti.persistence.entities.data.CatchBatch; -import fr.ifremer.tutti.persistence.entities.data.SampleCategoryEnum; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; -import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; -import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; -import fr.ifremer.tutti.persistence.entities.referential.CaracteristicType; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; -import org.hibernate.FlushMode; -import org.hibernate.type.IntegerType; -import org.springframework.dao.DataIntegrityViolationException; -import org.springframework.dao.DataRetrievalFailureException; -import org.springframework.stereotype.Service; - -import javax.annotation.Resource; -import java.io.Serializable; -import java.text.MessageFormat; -import java.util.Collections; -import java.util.HashMap; -import java.util.HashSet; -import java.util.List; -import java.util.Map; -import java.util.Set; - -@Service("batchPersistenceService") -public class BatchPersistenceServiceImpl - extends AbstractPersistenceService implements BatchPersistenceService { - - /** Logger. */ - private static final Log log = - LogFactory.getLog(BatchPersistenceServiceImpl.class); - - @Resource(name = "referentialPersistenceService") - protected ReferentialPersistenceService referentialService; - - @Resource(name = "catchBatchDao") - protected CatchBatchExtendDao catchBatchDao; - - @Resource(name = "scientificCruiseCatchBatchValidator") - protected CatchBatchValidator catchBatchValidator; - - @Override - public void init() { - super.init(); - catchBatchDao.registerCatchBatchValidator(catchBatchValidator); - } - - @Override - public void close() { - catchBatchDao.unregisterCatchBatchValidator(catchBatchValidator); - super.close(); - } - - //------------------------------------------------------------------------// - //-- CatchBatch methods --// - //------------------------------------------------------------------------// - - @Override - public CatchBatch getCatchBatchFromFishingOperation(String fishingOperationId) throws CatchBatchValidationException { - Preconditions.checkNotNull(fishingOperationId); - - Integer catchBatchId = catchBatchDao.getIdByFishingOperationId(Integer.valueOf(fishingOperationId)); - - fr.ifremer.adagio.core.dao.data.batch.CatchBatch source; - // wenever want to repair anything from Tutti - source = catchBatchDao.loadFullTree(catchBatchId, true, false); - - CatchBatch result = new CatchBatch(); - result.setId(source.getId().toString()); - result.setCatchTotalWeight(source.getWeight()); - - // Vrac - SortingBatch vracBatch = catchBatchDao.getSortingBatch(source.getChildBatchs(), - "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID); - result.setCatchTotalSortedCarousselWeight(vracBatch.getWeight()); - result.setCatchTotalSortedTremisWeight(vracBatch.getWeightBeforeSampling()); - { - // Species - SortingBatch speciesBatch = catchBatchDao.getSortingBatch(vracBatch.getChildBatchs(), - "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); - - result.setSpeciesTotalSampleSortedWeight(speciesBatch.getWeight()); - result.setSpeciesTotalSortedWeight(speciesBatch.getWeightBeforeSampling()); - - { - // Inert - SortingBatch inertBatch = catchBatchDao.getSortingBatch(speciesBatch.getChildBatchs(), - "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_INERT); - if (inertBatch != null) { - result.setSpeciesTotalInertWeight(inertBatch.getWeight()); - } - - // Alive no itemized - SortingBatch livingNotItemizedBatch = catchBatchDao.getSortingBatch(speciesBatch.getChildBatchs(), - "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_LIFE); - if (livingNotItemizedBatch != null) { - result.setSpeciesTotalLivingNotItemizedWeight(livingNotItemizedBatch.getWeight()); - } - } - - // Benthos - SortingBatch benthosBatch = catchBatchDao.getSortingBatch(vracBatch.getChildBatchs(), - "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); - if (benthosBatch != null) { - result.setBenthosTotalSampleSortedWeight(benthosBatch.getWeight()); - result.setBenthosTotalSortedWeight(benthosBatch.getWeightBeforeSampling()); - } - - // TODO : Plancton... - } - - // Hors Vrac - SortingBatch horsVracBatch = catchBatchDao.getSortingBatch(source.getChildBatchs(), - "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID); - if (horsVracBatch != null) { - result.setCatchTotalUnsortedWeight(horsVracBatch.getWeight()); - { - // Species - SortingBatch speciesBatch = catchBatchDao.getSortingBatch(horsVracBatch.getChildBatchs(), - "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); - if (speciesBatch != null) { - result.setSpeciesTotalUnsortedWeight(speciesBatch.getWeight()); - } - - SortingBatch benthosBatch = catchBatchDao.getSortingBatch(horsVracBatch.getChildBatchs(), - "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); - if (benthosBatch != null) { - result.setBenthosTotalUnsortedWeight(benthosBatch.getWeight()); - } - - // TODO : Plancton... - } - } - - // Non trié - SortingBatch unsortedBatch = catchBatchDao.getSortingBatch(source.getChildBatchs(), - "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_UNSORTED_ID); - if (unsortedBatch != null) { - result.setCatchTotalRejectedWeight(unsortedBatch.getWeight()); - } - - return result; - } - - @Override - public CatchBatch createCatchBatch(CatchBatch bean) { - Preconditions.checkNotNull(bean); - Preconditions.checkArgument(bean.getId() == null); - Preconditions.checkNotNull(bean.getFishingOperation()); - Preconditions.checkNotNull(bean.getFishingOperation().getId()); - - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = fr.ifremer.adagio.core.dao.data.batch.CatchBatch.Factory.newInstance(); - beanToEntity(bean, catchBatch, true); - catchBatch = catchBatchDao.create(catchBatch); - bean.setId(String.valueOf(catchBatch.getId())); - - // Link to fishing operation - getCurrentSession().flush(); - Integer fishingOperationId = Integer.valueOf(bean.getFishingOperation().getId()); - int rowUpdated = queryUpdate("updateFishingOperationCatchBatch", - "fishingOperationId", IntegerType.INSTANCE, fishingOperationId, - "catchBatchId", IntegerType.INSTANCE, catchBatch.getId()); - if (rowUpdated == 0) { - throw new DataIntegrityViolationException("Could not attach catch batch to the given operation : operation was not found."); - } - - return bean; - } - - @Override - public CatchBatch saveCatchBatch(CatchBatch bean) { - - Preconditions.checkNotNull(bean); - Preconditions.checkNotNull(bean.getId()); - - getCurrentSession().enableFetchProfile("batch-with-childs"); - getCurrentSession().setFlushMode(FlushMode.COMMIT); - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.load(Integer.valueOf(bean.getId())); - if (catchBatch == null) { - throw new DataRetrievalFailureException("Could not retrieve catch batch with id=" + bean.getId()); - } - - beanToEntity(bean, catchBatch, true); - catchBatchDao.update(catchBatch); - getCurrentSession().flush(); - - return bean; - } - - //------------------------------------------------------------------------// - //-- SpeciesBatch methods --// - //------------------------------------------------------------------------// - - @Override - public BatchContainer<SpeciesBatch> getRootSpeciesBatch(String fishingOperationId) { - - // Load batch tree - Integer catchBatchId = catchBatchDao.getIdByFishingOperationId(Integer.valueOf(fishingOperationId)); - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); - - // Vrac / Species - SortingBatch vracSpeciesBatch = catchBatchDao.getSortingBatch(catchBatch.getChildBatchs(), - "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, - "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); - - // container of speciesBatch is arbitraty put on vrac type (there is - // no common ancestor for all species batch). - BatchContainer<SpeciesBatch> result = new BatchContainer<SpeciesBatch>(); - result.setId(String.valueOf(vracSpeciesBatch.getId())); - - for (Batch batch1 : vracSpeciesBatch.getChildBatchs()) { - SortingBatch source = (SortingBatch) batch1; - - // evict some special batches : Life (or Biota) and Inert - if (source.getReferenceTaxon() != null - && !enumeration.REFERENCE_TAXON_ID_LIFE.equals(source.getReferenceTaxon().getId()) - && !enumeration.REFERENCE_TAXON_ID_INERT.equals(source.getReferenceTaxon().getId())) { - SpeciesBatch target = new SpeciesBatch(); - - entityToBean(source, target); - result.addChildren(target); - } - } - - // Hors-Vrac / Species - SortingBatch horsVracSpeciesBatch = catchBatchDao.getSortingBatch(catchBatch.getChildBatchs(), - "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, - "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); - if (horsVracSpeciesBatch != null) { - for (Batch batch : horsVracSpeciesBatch.getChildBatchs()) { - SortingBatch source = (SortingBatch) batch; - - SpeciesBatch target = new SpeciesBatch(); - - entityToBean(source, target); - result.addChildren(target); - } - } - - return result; - } - - @Override - public SpeciesBatch createSpeciesBatch(SpeciesBatch bean, - String parentBatchId) { - Preconditions.checkNotNull(bean); - Preconditions.checkArgument(bean.getId() == null); - Preconditions.checkNotNull(bean.getSpecies()); - Preconditions.checkNotNull(bean.getSpecies().getId()); - Preconditions.checkNotNull(bean.getFishingOperation()); - Preconditions.checkNotNull(bean.getFishingOperation().getId()); - - getCurrentSession().setFlushMode(FlushMode.COMMIT); - - // Load full batch tree - Integer catchBatchId = catchBatchDao.getIdByFishingOperationId(Integer.valueOf(bean.getFishingOperation().getId())); - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); - - SortingBatch batch = SortingBatch.Factory.newInstance(); - speciesBatchToEntity(bean, batch, parentBatchId, catchBatch); - batch = catchBatchDao.createSortingBatch(batch, catchBatch); - - bean.setId(String.valueOf(batch.getId())); - - getCurrentSession().flush(); - - return bean; - } - - @Override - public SpeciesBatch saveSpeciesBatch(SpeciesBatch bean) { - Preconditions.checkNotNull(bean); - Preconditions.checkNotNull(bean.getId()); - - // Load full batch tree - Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(Integer.valueOf(bean.getId())); - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); - - getCurrentSession().setFlushMode(FlushMode.COMMIT); - - SortingBatch batch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(bean.getId())); - String parentBatchId = null; - if (bean.getParentBatch() != null) { - parentBatchId = bean.getParentBatch().getId(); - } - speciesBatchToEntity(bean, batch, parentBatchId, catchBatch); - catchBatchDao.updateSortingBatch(batch, catchBatch); - getCurrentSession().flush(); - - return bean; - } - - @Override - public void deleteSpeciesBatch(String id) { - Preconditions.checkNotNull(id); - - getCurrentSession().setFlushMode(FlushMode.COMMIT); - - catchBatchDao.removeWithChildren(Integer.valueOf(id)); - - getCurrentSession().flush(); - } - - @Override - public void deleteSpeciesSubBatch(String id) { - deleteSpeciesBatch(id); - } - - @Override - public void changeSpeciesBatchSpecies(String batchId, Species species) { - Preconditions.checkNotNull(batchId); - Preconditions.checkNotNull(species); - Preconditions.checkNotNull(species.getReferenceTaxonId()); - - catchBatchDao.setSortingBatchReferenceTaxon(batchId, species.getReferenceTaxonId()); - } - - //------------------------------------------------------------------------// - //-- SpeciesBatchFrequency methods --// - //------------------------------------------------------------------------// - - @Override - public List<SpeciesBatchFrequency> getAllSpeciesBatchFrequency( - String speciesBatchId) { - List<SpeciesBatchFrequency> results = Lists.newArrayList(); - - Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(Integer.valueOf(speciesBatchId)); - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); - - if (catchBatchId == null) { - return results; - } - - SortingBatch sortingBatch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(speciesBatchId)); - - for (Batch batch : sortingBatch.getChildBatchs()) { - SortingBatch source = (SortingBatch) batch; - SpeciesBatchFrequency target = new SpeciesBatchFrequency(); - - entityToBean(source, target); - results.add(target); - } - return Collections.unmodifiableList(results); - } - - @Override - public List<SpeciesBatchFrequency> saveSpeciesBatchFrequency( - String speciesBatchId, - List<SpeciesBatchFrequency> frequencies) { - Preconditions.checkNotNull(speciesBatchId); - Preconditions.checkNotNull(frequencies); - - List<SpeciesBatchFrequency> notNullFrequencies = Lists.newArrayList(); - - // Check that all frequencies have the same length PMFM (before doing any db call) - // and remove null frequencies - String pmfmId = null; - for (SpeciesBatchFrequency source : frequencies) { - - if (source.getLengthStepCaracteristic() != null) { - if (pmfmId == null) { - pmfmId = source.getLengthStepCaracteristic().getId(); - } else if (!pmfmId.equals(source.getLengthStepCaracteristic().getId())) { - throw new DataIntegrityViolationException("Batch frequencies under one Speciesbatch must have all the same lengthStepCaracteristic"); - } - notNullFrequencies.add(source); - } - } - - getCurrentSession().setFlushMode(FlushMode.COMMIT); - - Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(Integer.valueOf(speciesBatchId)); - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); - - if (catchBatch == null) { - return notNullFrequencies; - } - - // Retrieve parent - SortingBatch parentBatch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(speciesBatchId)); - - // Remember child ids, to remove unchanged item (see at bottom in this method) - List<Integer> notUpdatedChildIds = Lists.newArrayList(); - for (Batch batch : parentBatch.getChildBatchs()) { - SortingBatch sortingBatch = (SortingBatch) batch; - notUpdatedChildIds.add(sortingBatch.getId()); - } - - short rankOrder = 0; - List<SortingBatch> batchsToUpdate = Lists.newArrayList(); - for (SpeciesBatchFrequency source : notNullFrequencies) { - rankOrder++; - - // Not existing batch - SortingBatch target; - if (source.getId() == null) { - target = SortingBatch.Factory.newInstance(); - - // Fill the sorting batch from the source - beanToEntity(source, target, parentBatch, rankOrder, true); - - // Create the targeted batch, then update the source id - catchBatchDao.createSortingBatch(target, catchBatch); - source.setId(target.getId().toString()); - } - - // Existing batch - else { - target = catchBatchDao.loadSortingBatch(Integer.valueOf(source.getId()), catchBatch); - - // Fill the sorting batch from the source - beanToEntity(source, target, parentBatch, rankOrder, true); - - // Add the batch into a list (will be update later, using this list) - batchsToUpdate.add(target); - - notUpdatedChildIds.remove(target.getId()); - } - } - - // If some batchs need to be update, do it - if (batchsToUpdate.size() > 0) { - catchBatchDao.updateSortingBatch(batchsToUpdate, catchBatch); - } - - if (notUpdatedChildIds.size() > 0) { - for (Integer batchId : notUpdatedChildIds) { - catchBatchDao.removeWithChildren(batchId, catchBatch); - } - } - - getCurrentSession().flush(); - - return Collections.unmodifiableList(notNullFrequencies); - } - - //------------------------------------------------------------------------// - //-- Benthos Batch methods --// - //------------------------------------------------------------------------// - - @Override - public BatchContainer<SpeciesBatch> getRootBenthosBatch(String fishingOperationId) { - // Load batch tree - Integer catchBatchId = catchBatchDao.getIdByFishingOperationId(Integer.valueOf(fishingOperationId)); - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); - - // Vrac / Benthos - SortingBatch vracSpeciesBatch = catchBatchDao.getSortingBatch(catchBatch.getChildBatchs(), - "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, - "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); - - BatchContainer<SpeciesBatch> result = new BatchContainer<SpeciesBatch>(); - result.setId(String.valueOf(vracSpeciesBatch.getId())); - for (Batch batch1 : vracSpeciesBatch.getChildBatchs()) { - SortingBatch source = (SortingBatch) batch1; - - // evict some special batches : Life (or Biota) and Inert - if (source.getReferenceTaxon() != null - && !enumeration.REFERENCE_TAXON_ID_LIFE.equals(source.getReferenceTaxon().getId()) - && !enumeration.REFERENCE_TAXON_ID_INERT.equals(source.getReferenceTaxon().getId())) { - SpeciesBatch target = new SpeciesBatch(); - - entityToBean(source, target); - result.addChildren(target); - } - } - - // Hors-Vrac / Benthos - SortingBatch horsVracSpeciesBatch = catchBatchDao.getSortingBatch(catchBatch.getChildBatchs(), - "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, - "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); - if (horsVracSpeciesBatch != null) { - for (Batch batch : horsVracSpeciesBatch.getChildBatchs()) { - SortingBatch source = (SortingBatch) batch; - - SpeciesBatch target = new SpeciesBatch(); - - entityToBean(source, target); - result.addChildren(target); - } - } - return result; - } - - @Override - public SpeciesBatch createBenthosBatch(SpeciesBatch bean, - String parentBatchId) { - Preconditions.checkNotNull(bean); - Preconditions.checkArgument(bean.getId() == null); - Preconditions.checkNotNull(bean.getSpecies()); - Preconditions.checkNotNull(bean.getSpecies().getId()); - Preconditions.checkNotNull(bean.getFishingOperation()); - Preconditions.checkNotNull(bean.getFishingOperation().getId()); - - getCurrentSession().setFlushMode(FlushMode.COMMIT); - - // Load full batch tree - Integer catchBatchId = catchBatchDao.getIdByFishingOperationId(Integer.valueOf(bean.getFishingOperation().getId())); - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); - - SortingBatch batch = SortingBatch.Factory.newInstance(); - benthosBatchToEntity(bean, batch, parentBatchId, catchBatch); - batch = catchBatchDao.createSortingBatch(batch, catchBatch); - - bean.setId(String.valueOf(batch.getId())); - - getCurrentSession().flush(); - - return bean; - } - - @Override - public SpeciesBatch saveBenthosBatch(SpeciesBatch bean) { - Preconditions.checkNotNull(bean); - Preconditions.checkNotNull(bean.getId()); - - // Load full batch tree - Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(Integer.valueOf(bean.getId())); - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); - - getCurrentSession().setFlushMode(FlushMode.COMMIT); - - SortingBatch batch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(bean.getId())); - String parentBatchId = null; - if (bean.getParentBatch() != null) { - parentBatchId = bean.getParentBatch().getId(); - } - benthosBatchToEntity(bean, batch, parentBatchId, catchBatch); - catchBatchDao.updateSortingBatch(batch, catchBatch); - getCurrentSession().flush(); - - return bean; - } - - @Override - public void deleteBenthosBatch(String id) { - Preconditions.checkNotNull(id); - - getCurrentSession().setFlushMode(FlushMode.COMMIT); - - catchBatchDao.removeWithChildren(Integer.valueOf(id)); - - getCurrentSession().flush(); - } - - @Override - public void deleteBenthosSubBatch(String id) { - deleteBenthosBatch(id); - } - - @Override - public void changeBenthosBatchSpecies(String batchId, Species species) { - - Preconditions.checkNotNull(batchId); - Preconditions.checkNotNull(species); - Preconditions.checkNotNull(species.getReferenceTaxonId()); - - if (log.isDebugEnabled()) { - log.debug("Changing species for batch id=" + batchId); - } - - int rowUpdated = queryUpdate("updateBatchSpecies", - "batchId", IntegerType.INSTANCE, Integer.valueOf(batchId), - "referenceTaxonId", IntegerType.INSTANCE, species.getReferenceTaxonId()); - Preconditions.checkArgument(rowUpdated == 1, "Unable to update operation, to be linked with catch batch."); - } - - //------------------------------------------------------------------------// - //-- SpeciesBatchFrequency methods (for benthos) --// - //------------------------------------------------------------------------// - - @Override - public List<SpeciesBatchFrequency> getAllBenthosBatchFrequency(String benthosBatchId) { - List<SpeciesBatchFrequency> results = Lists.newArrayList(); - - Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(Integer.valueOf(benthosBatchId)); - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); - - if (catchBatchId == null) { - return results; - } - - SortingBatch sortingBatch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(benthosBatchId)); - - for (Batch batch : sortingBatch.getChildBatchs()) { - SortingBatch source = (SortingBatch) batch; - SpeciesBatchFrequency target = new SpeciesBatchFrequency(); - - entityToBean(source, target); - results.add(target); - } - return Collections.unmodifiableList(results); - } - - @Override - public List<SpeciesBatchFrequency> saveBenthosBatchFrequency(String benthosBatchId, - List<SpeciesBatchFrequency> frequencies) { - Preconditions.checkNotNull(benthosBatchId); - Preconditions.checkNotNull(frequencies); - - // Check that all frequencies have the same length PMFM (before doing any db call) - String pmfmId = null; - for (SpeciesBatchFrequency source : frequencies) { - - if (pmfmId == null) { - pmfmId = source.getLengthStepCaracteristic().getId(); - } else if (!pmfmId.equals(source.getLengthStepCaracteristic().getId())) { - throw new DataIntegrityViolationException("Batch frequencies under one Speciesbatch must have all the same lengthStepCaracteristic"); - } - } - - getCurrentSession().setFlushMode(FlushMode.COMMIT); - - Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(Integer.valueOf(benthosBatchId)); - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); - - if (catchBatch == null) { - return frequencies; - } - - // Retrieve parent - SortingBatch parentBatch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(benthosBatchId)); - - // Remember child ids, to remove unchanged item (see at bottom in this method) - List<Integer> notUpdatedChildIds = Lists.newArrayList(); - for (Batch batch : parentBatch.getChildBatchs()) { - SortingBatch sortingBatch = (SortingBatch) batch; - notUpdatedChildIds.add(sortingBatch.getId()); - } - - short rankOrder = 0; - List<SortingBatch> batchsToUpdate = Lists.newArrayList(); - for (SpeciesBatchFrequency source : frequencies) { - rankOrder++; - - // Not existing batch - SortingBatch target; - if (source.getId() == null) { - target = SortingBatch.Factory.newInstance(); - - // Fill the sorting batch from the source - beanToEntity(source, target, parentBatch, rankOrder, true); - - // Create the targeted batch, then update the source id - catchBatchDao.createSortingBatch(target, catchBatch); - source.setId(target.getId().toString()); - } - - // Existing batch - else { - target = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(source.getId())); - - // Fill the sorting batch from the source - beanToEntity(source, target, parentBatch, rankOrder, true); - - // Add the batch into a list (will be update later, using this list) - batchsToUpdate.add(target); - - notUpdatedChildIds.remove(target.getId()); - } - } - - // If some batchs need to be update, do it - if (batchsToUpdate.size() > 0) { - catchBatchDao.updateSortingBatch(batchsToUpdate, catchBatch); - } - - if (notUpdatedChildIds.size() > 0) { - for (Integer batchId : notUpdatedChildIds) { - catchBatchDao.removeWithChildren(batchId, catchBatch); - } - } - - getCurrentSession().flush(); - - return Collections.unmodifiableList(frequencies); - } - - - //------------------------------------------------------------------------// - //-- Internal methods --// - //------------------------------------------------------------------------// - - protected SpeciesBatch entityToBean(SortingBatch source, - SpeciesBatch target) { - - target.setId(source.getId().toString()); - - // Individual count - target.setNumber(source.getIndividualCount()); - - // Convert database weight (and sampling ratio) into UI weight and sampleCategoryWeight - if (source.getWeight() != null && source.getWeightBeforeSampling() == null) { - target.setSampleCategoryWeight(source.getWeight()); - } else { - target.setWeight(source.getWeight()); - target.setSampleCategoryWeight(source.getWeightBeforeSampling()); - } - - // Comments - target.setComment(source.getComments()); - - // Sample category type (only one is applied) - SortingMeasurement sm = null; - if (source.getSortingMeasurements().size() == 1) { - sm = source.getSortingMeasurements().iterator().next(); - } else if (source.getReferenceTaxon() != null && source.getReferenceTaxon().getId() != null) { - sm = catchBatchDao.getInheritedSortingMeasurement(source, enumeration.PMFM_ID_SORTED_UNSORTED); - } - if (sm != null) { - SampleCategoryEnum sampleCategory = enumeration.getSampleCategoryByPmfmId(sm.getPmfm().getId()); - if (sampleCategory != null) { - Integer qualitativeId = null; - if (sm.getQualitativeValue() != null) { - qualitativeId = sm.getQualitativeValue().getId(); - } - setSampleCategoryQualitative(target, sm.getPmfm().getId(), sm.getNumericalValue(), sm.getAlphanumericalValue(), qualitativeId); - } - } - - // Species - Integer referenceTaxonId = source.getInheritedReferenceTaxonId(); - if (referenceTaxonId == null && source.getReferenceTaxon() != null) { - referenceTaxonId = source.getReferenceTaxon().getId(); - } - if (referenceTaxonId != null) { - // TODO : add cache on getSpeciesByReferenceTaxonId - Species species = referentialService.getSpeciesByReferenceTaxonId(referenceTaxonId); - target.setSpecies(species); - } - - if (target.getSampleCategoryType() != null && source.getChildBatchs().size() > 0) { - List<SpeciesBatch> targetChilds = Lists.newArrayList(); - for (Batch batch : source.getChildBatchs()) { - SortingBatch sourceChild = (SortingBatch) batch; - SpeciesBatch targetChild = new SpeciesBatch(); - entityToBean(sourceChild, targetChild); - if (targetChild.getSampleCategoryValue() != null) { - targetChilds.add(targetChild); - targetChild.setParentBatch(target); - } - } - target.setChildBatchs(targetChilds); - } - - return target; - } - - protected void entityToBean(SortingBatch source, - SpeciesBatchFrequency target) { - - target.setId(source.getId().toString()); - - target.setNumber(source.getIndividualCount()); - target.setWeight(source.getWeight()); - target.setComment(source.getComments()); - - // Length step category - if (source.getSortingMeasurements().size() == 1) { - SortingMeasurement sm = source.getSortingMeasurements().iterator().next(); - if (sm.getPmfm() != null && sm.getPmfm().getId() != null) { - Caracteristic lengthStepCaracteristic = referentialService.getCaracteristic(sm.getPmfm().getId()); - target.setLengthStepCaracteristic(lengthStepCaracteristic); - } - - // Length - target.setLengthStep(sm.getNumericalValue()); - } - } - - protected void speciesBatchToEntity(SpeciesBatch source, - SortingBatch target, - String parentBatchId, - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch) { - sortingBatchToEntity(source, target, parentBatchId, catchBatch, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); - } - - protected void benthosBatchToEntity(SpeciesBatch source, - SortingBatch target, - String parentBatchId, - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch) { - sortingBatchToEntity(source, target, parentBatchId, catchBatch, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); - } - - protected void sortingBatchToEntity(SpeciesBatch source, - SortingBatch target, - String parentBatchId, - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch, - Integer batchPmfm) { - - Preconditions.checkNotNull(source.getFishingOperation()); - Preconditions.checkNotNull(source.getFishingOperation().getId()); - - // Retrieve recorder department - Integer recorderDepartmentId = getRecorderDepartmentId(); - - // Create lists to store all updates, then remove not updated items - Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); - if (target.getQuantificationMeasurements() != null) { - notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); - } - Set<SortingMeasurement> notChangedSortingMeasurements = new HashSet<SortingMeasurement>(); - if (target.getSortingMeasurements() != null) { - notChangedSortingMeasurements.addAll(target.getSortingMeasurements()); - } - - // If parent and root need to be set - if (target.getId() == null - || target.getRootBatch() == null - || (target.getParentBatch() != null && !target.getParentBatch().getId().toString().equals(parentBatchId))) { - setBatchParents(source, target, parentBatchId, catchBatch, batchPmfm); - } - - // RankOrder (initialize once, at creation) - if (target.getRankOrder() == null) { - // Start rank order at 3, because of special batches 'Biota' and 'Inert' - short rankOrder = (short) 3; - if (source.getParentBatch() != null && source.getParentBatch().getChildBatchs() != null) { - rankOrder += (short) source.getParentBatch().getChildBatchs().size(); - } else if (target.getParentBatch() != null && target.getParentBatch().getChildBatchs() != null) { - rankOrder += (short) target.getParentBatch().getChildBatchs().size(); - } - target.setRankOrder(rankOrder); - } - - // Force subgroup count to '1', as Allegro - target.setSubgroupCount(1f); - - // Weight or SampleCategoryWeight - if (source.getWeight() == null && source.getSampleCategoryWeight() == null) { - // Nothing to do : will be removed later, using notChangedSortingMeasurements - } else if (source.getSampleCategoryWeight() != null && source.getWeight() == null) { - QuantificationMeasurement quantificationMeasurement = catchBatchDao.setQuantificationMeasurement(target, - enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getSampleCategoryWeight(), true); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } else if (source.getWeight() != null && source.getSampleCategoryWeight() == null) { - QuantificationMeasurement quantificationMeasurement = catchBatchDao.setQuantificationMeasurement(target, - enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getWeight(), true); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } - - // Sampling Ratio - if (source.getSampleCategoryWeight() == null || source.getWeight() == null) { - target.setSamplingRatio(null); - target.setSamplingRatioText(null); - } else if (source.getSampleCategoryWeight() != null && source.getWeight() != null) { - String samplingRatioText = source.getWeight() + "/" + source.getSampleCategoryWeight(); - samplingRatioText = samplingRatioText.replaceAll(",", "."); - target.setSamplingRatioText(samplingRatioText); - target.setSamplingRatio(source.getWeight() / source.getSampleCategoryWeight()); - QuantificationMeasurement quantificationMeasurement = catchBatchDao.setQuantificationMeasurement(target, - enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getWeight(), true); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } - - // Sorting measurement - if (source.getSampleCategoryType() == null || source.getSampleCategoryValue() == null) { - // Nothing to do : will be removed later, using notChangedSortingMeasurements - } else if (source.getSampleCategoryType() != null && source.getSampleCategoryValue() != null) { - Integer pmfmId = sampleCategory2PmfmId(source.getSampleCategoryType()); - // Do not store sorting measurement if pmfm = SORTED (already store in an ancestor batch) - if (!pmfmId.equals(enumeration.PMFM_ID_SORTED_UNSORTED)) { - SortingMeasurement sortingMeasurement = setSortingMeasurement(target, recorderDepartmentId, - source.getSampleCategoryType(), source.getSampleCategoryValue()); - notChangedSortingMeasurements.remove(sortingMeasurement); - } - } - - // Individual count - if (source.getNumber() == null) { - target.setIndividualCount(null); - } else if (source.getNumber() != null) { - target.setIndividualCount(source.getNumber()); - } - - // Species - if (source.getSpecies() == null || parentBatchId != null) { - target.setReferenceTaxon(null); - } else if (source.getSpecies() != null && parentBatchId == null) { - ReferenceTaxon referenceTaxon = load(ReferenceTaxonImpl.class, source.getSpecies().getReferenceTaxonId()); - target.setReferenceTaxon(referenceTaxon); - } - - // QualityFlag - if (source.isSpeciesToConfirm()) { - target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_DOUBTFUL)); - } else { - target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); - } - - // Comments - if (source.getComment() == null) { - target.setComments(null); - } else if (source.getComment() != null) { - target.setComments(source.getComment()); - } - - // Exhaustive inventory (always true under a species batch) - target.setExhaustiveInventory(true); - - // Removed not changed measurements (in sorting and quantification measurement lists) - if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { - for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { - target.getQuantificationMeasurements().remove(qm); - } - } - if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { - for (SortingMeasurement sm : notChangedSortingMeasurements) { - target.getSortingMeasurements().remove(sm); - } - } - } - - protected void setBatchParents(SpeciesBatch source, - SortingBatch target, - String parentBatchIdStr, - fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch, - Integer batchPmfmId) { - - Preconditions.checkNotNull(target); - Preconditions.checkNotNull(source.getFishingOperation()); - Preconditions.checkNotNull(source.getFishingOperation().getId()); - - // Load existing parent and root - SortingBatch parentBatch; - if (parentBatchIdStr != null) { - parentBatch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(parentBatchIdStr)); - } - - // Or retrieve parent batch, from pmfm id - else { - // Retrieve category type - Integer pmfmId = sampleCategory2PmfmId(source.getSampleCategoryType()); - if (pmfmId == null || !pmfmId.equals(enumeration.PMFM_ID_SORTED_UNSORTED)) { - throw new DataIntegrityViolationException(MessageFormat.format( - "A species batch with no parent should have a sampleCategoryType {0} (PMFM.ID={1})", - SampleCategoryEnum.sortedUnsorted.name(), - enumeration.PMFM_ID_SORTED_UNSORTED)); - } - Integer qualitativeValueId = convertSampleCategoryValueIntoQualitativeId(source.getSampleCategoryValue()); - - parentBatch = catchBatchDao.getSortingBatch(catchBatch.getChildBatchs(), - "pmfmId", pmfmId, qualitativeValueId, - "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, batchPmfmId); - - // Parent Batch - target.setParentBatch(parentBatch); - } - - - if (parentBatch == null) { - throw new DataIntegrityViolationException( - "Could not retrieve parent batch, for a given speciesBatch : invalid batch tree structure. Please make sure CatchBatch has been saved before to create a SpeciesBatch."); - } - - // Parent Batch - target.setParentBatch(parentBatch); - target.setRootBatch(catchBatch); - } - - protected Integer convertSampleCategoryValueIntoQualitativeId(Serializable value) { - if (value == null) - return null; - Integer qualitativeValueId = null; - if (value instanceof CaracteristicQualitativeValue) { - CaracteristicQualitativeValue cqValue = (CaracteristicQualitativeValue) value; - qualitativeValueId = Integer.valueOf(cqValue.getId()); - } else if (value instanceof String) { - qualitativeValueId = Integer.valueOf((String) value); - } - return qualitativeValueId; - } - - protected void setSampleCategoryQualitative(SpeciesBatch target, Integer pmfmId, Float numericalvalue, String alphanumericalValue, - Integer qualitativeValueId) { - // skip if null or corresponding to the SORTING_TYPE PMFM (Expèce, Benthos, Plancton, etc.) - if (pmfmId == null || pmfmId.equals(enumeration.PMFM_ID_SORTING_TYPE)) { - return; - } - - SampleCategoryEnum sampleCategory = enumeration.getSampleCategoryByPmfmId(pmfmId); - Preconditions.checkNotNull(sampleCategory, "Unable to find corresponding SampleCategoryEnum for PMFM.ID : " + pmfmId); - - target.setSampleCategoryType(sampleCategory); - if (numericalvalue != null) { - target.setSampleCategoryValue(numericalvalue); - return; - } - if (alphanumericalValue != null) { - target.setSampleCategoryValue(alphanumericalValue); - return; - } - - Caracteristic caracteristic = referentialService.getCaracteristic(pmfmId); - if (caracteristic == null || caracteristic.getCaracteristicType() != CaracteristicType.QUALITATIVE) { - return; - } - CaracteristicQualitativeValue value = null; - for (CaracteristicQualitativeValue qv : caracteristic.getQualitativeValue()) { - if (qualitativeValueId == Integer.parseInt(qv.getId())) { - value = qv; - break; - } - } - target.setSampleCategoryValue(value); - } - - protected void beanToEntity(SpeciesBatchFrequency source, SortingBatch target, SortingBatch parentBatch, short rankOrder, boolean copyIfNull) { - Preconditions.checkNotNull(source.getBatch()); - Preconditions.checkNotNull(source.getBatch().getId()); - - // Retrieve recorder department - Integer recorderDepartmentId = getRecorderDepartmentId(); - - // Create lists to store all updates, then remove not updated items - Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); - if (target.getQuantificationMeasurements() != null) { - notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); - } - Set<SortingMeasurement> notChangedSortingMeasurements = new HashSet<SortingMeasurement>(); - if (target.getSortingMeasurements() != null) { - notChangedSortingMeasurements.addAll(target.getSortingMeasurements()); - } - - // If parent and root need to be set - if (target.getId() == null - || target.getRootBatch() == null - || (target.getParentBatch() != null && !target.getParentBatch().getId().equals(parentBatch.getId()))) { - - target.setParentBatch(parentBatch); - target.setRootBatch(parentBatch.getRootBatch()); - } - - // RankOrder - target.setRankOrder(rankOrder); - - // Weight or SampleCategoryWeight - if (copyIfNull && source.getWeight() == null) { - // Nothing to do : will be removed later, using notChangedSortingMeasurements - } else if (source.getWeight() != null) { - QuantificationMeasurement quantificationMeasurement = catchBatchDao.setQuantificationMeasurement(target, - enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getWeight(), true); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } - - // Sorting measurement - if (copyIfNull && (source.getLengthStepCaracteristic() == null || source.getLengthStep() == null)) { - // Nothing to do : will be removed later, using notChangedSortingMeasurements - } else if (source.getLengthStepCaracteristic() != null && source.getLengthStep() != null) { - Integer pmfmId = Integer.valueOf(source.getLengthStepCaracteristic().getId()); - SortingMeasurement sortingMeasurement = setSortingMeasurement(target, recorderDepartmentId, pmfmId, - source.getLengthStep()); - notChangedSortingMeasurements.remove(sortingMeasurement); - } - - // Individual count - if (copyIfNull && source.getNumber() == null) { - target.setIndividualCount(null); - } else if (source.getNumber() != null) { - target.setIndividualCount(source.getNumber()); - } - - // Species - target.setReferenceTaxon(null); - - // QualityFlag - target.setQualityFlag(parentBatch.getQualityFlag()); - - // Comments - if (copyIfNull && source.getComment() == null) { - target.setComments(null); - } else if (source.getComment() != null) { - target.setComments(source.getComment()); - } - - // Exhaustive inventory (always true under a species batch) - target.setExhaustiveInventory(true); - - // Removed not changed measurements (in sorting and quantification measurement lists) - if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { - for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { - target.getQuantificationMeasurements().remove(qm); - } - } - if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { - for (SortingMeasurement sm : notChangedSortingMeasurements) { - target.getSortingMeasurements().remove(sm); - } - } - } - - protected UIWeight convertDatabase2UI(Float weight, Float samplingRatio, String samplingRatioText) { - UIWeight result = new UIWeight(); - - // Weight & sampleCategory Weight - if (samplingRatio == null) { - result.sampleCategoryWeight = weight; - } else if (weight != null) { - String startStr = weight.toString().replace(',', '.') + "/"; - if (samplingRatioText != null && samplingRatioText.startsWith(startStr)) { - String weightStr = samplingRatioText.substring(startStr.length()); - if (weightStr != null && !weightStr.isEmpty()) { - result.sampleCategoryWeight = Float.parseFloat(weightStr); - result.weight = weight; - } - } else { - result.sampleCategoryWeight = weight; - } - } - return result; - } - - static class UIWeight { - Float sampleCategoryWeight = null; - - Float weight = null; - } - - protected void beanToEntity(CatchBatch source, - fr.ifremer.adagio.core.dao.data.batch.CatchBatch target, - boolean copyIfNull) { - Preconditions.checkNotNull(source.getFishingOperation()); - Preconditions.checkNotNull(source.getFishingOperation().getId()); - - // Retrieve recorder department - Integer recorderDepartmentId = getRecorderDepartmentId(); - - // First initialization (when created) - Integer fishingOperationId = Integer.valueOf(source.getFishingOperation().getId()); - target.setFishingOperation(load(FishingOperationImpl.class, fishingOperationId)); - - target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); - target.setRankOrder((short) 1); - target.setSynchronizationStatus(SynchronizationStatus.DIRTY.getValue()); - - // Create lists to store all updates, then remove not updated items - Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); - if (target.getQuantificationMeasurements() != null) { - notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); - } - - // Total Weight - if (copyIfNull && source.getCatchTotalWeight() == null) { - // Nothing to do : will be removed later, using notChangedQuantificationMeasurements - } else if (source.getCatchTotalWeight() != null) { - QuantificationMeasurement quantificationMeasurement = catchBatchDao.setQuantificationMeasurement(target, - enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getCatchTotalWeight(), true); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } - - // Removed not changed measurements (in sorting and quantification measurement lists) - if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { - for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { - target.getQuantificationMeasurements().remove(qm); - } - } - Map<Integer, SortingBatch> catchBatchChilds = getChildsMap(target, enumeration.PMFM_ID_SORTED_UNSORTED); - - // ----------------------------------------------------------------------------- - // Sorted Vrac - // ----------------------------------------------------------------------------- - { - SortingBatch batch = catchBatchChilds.get(enumeration.QUALITATIVE_VRAC_ID); - if (batch == null) { - batch = SortingBatch.Factory.newInstance(); - target.getChildBatchs().add(batch); - } - beanToEntitySortingBatch(target, target, batch, recorderDepartmentId, - enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, - source.getCatchTotalSortedCarousselWeight(), source.getCatchTotalSortedTremisWeight(), - copyIfNull); - batch.setRankOrder((short) 1); - - // Manage childs : - { - Map<Integer, SortingBatch> batchChilds = getChildsMap(batch, enumeration.PMFM_ID_SORTING_TYPE); - - // ----------------------------------------------------------------------------- - // Sorted Vrac / Species - // ----------------------------------------------------------------------------- - SortingBatch speciesBatch = batchChilds.get(enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); - if (speciesBatch == null) { - speciesBatch = SortingBatch.Factory.newInstance(); - if (batch.getChildBatchs() == null) { - batch.setChildBatchs(Lists.newArrayList((Batch) speciesBatch)); - } else { - batch.getChildBatchs().add(speciesBatch); - } - } - beanToEntitySortingBatch(target, batch, speciesBatch, recorderDepartmentId, - enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, - source.getSpeciesTotalSampleSortedWeight(), source.getSpeciesTotalSortedWeight(), - copyIfNull); - speciesBatch.setRankOrder((short) 1); - - { - // ----------------------------------------------------------------------------- - // Sorted Vrac / Species / Alive not itemized - // ----------------------------------------------------------------------------- - SortingBatch aliveNotItemizedBatch = catchBatchDao.getSortingBatch(speciesBatch.getChildBatchs(), "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_LIFE); - if (aliveNotItemizedBatch == null) { - aliveNotItemizedBatch = SortingBatch.Factory.newInstance(); - if (speciesBatch.getChildBatchs() == null) { - speciesBatch.setChildBatchs(Lists.newArrayList((Batch) aliveNotItemizedBatch)); - } else { - speciesBatch.getChildBatchs().add(aliveNotItemizedBatch); - } - } - beanToEntityReferenceTaxonBatch(target, speciesBatch, aliveNotItemizedBatch, recorderDepartmentId, - enumeration.REFERENCE_TAXON_ID_LIFE, - source.getSpeciesTotalLivingNotItemizedWeight(), null, - copyIfNull); - aliveNotItemizedBatch.setRankOrder((short) 1); - - // ----------------------------------------------------------------------------- - // Sorted Vrac / Species / Inert (not alive) - // ----------------------------------------------------------------------------- - SortingBatch inertBatch = catchBatchDao.getSortingBatch(speciesBatch.getChildBatchs(), "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_INERT); - if (inertBatch == null) { - inertBatch = SortingBatch.Factory.newInstance(); - speciesBatch.getChildBatchs().add(inertBatch); - } - beanToEntityReferenceTaxonBatch(target, speciesBatch, inertBatch, recorderDepartmentId, - enumeration.REFERENCE_TAXON_ID_INERT, - source.getSpeciesTotalInertWeight(), null, - copyIfNull); - inertBatch.setRankOrder((short) 2); - } - - // ----------------------------------------------------------------------------- - // Sorted Vrac > Benthos - // ----------------------------------------------------------------------------- - { - SortingBatch benthosBatch = batchChilds.get(enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); - if (benthosBatch == null) { - benthosBatch = SortingBatch.Factory.newInstance(); - batch.getChildBatchs().add(benthosBatch); - } - beanToEntitySortingBatch(target, batch, benthosBatch, recorderDepartmentId, - enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS, - source.getBenthosTotalSampleSortedWeight(), source.getBenthosTotalSortedWeight(), - copyIfNull); - benthosBatch.setRankOrder((short) 2); - } - - // TODO plancton, macro déchet... - } - } - - // ----------------------------------------------------------------------------- - // Sorted Hors Vrac - // ----------------------------------------------------------------------------- - { - SortingBatch batch = catchBatchChilds.get(enumeration.QUALITATIVE_HORS_VRAC_ID); - if (batch == null) { - batch = SortingBatch.Factory.newInstance(); - target.getChildBatchs().add(batch); - } - beanToEntitySortingBatch(target, target, batch, recorderDepartmentId, - enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, - source.getCatchTotalUnsortedWeight(), null, - copyIfNull); - batch.setRankOrder((short) 2); - - // Manage childs : - { - Map<Integer, SortingBatch> batchChilds = getChildsMap(batch, enumeration.PMFM_ID_SORTING_TYPE); - - // ----------------------------------------------------------------------------- - // Hors Vrac > Species : - // ----------------------------------------------------------------------------- - { - SortingBatch speciesBatch = batchChilds.get(enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); - if (speciesBatch == null) { - speciesBatch = SortingBatch.Factory.newInstance(); - if (batch.getChildBatchs() == null) { - batch.setChildBatchs(Lists.newArrayList((Batch) speciesBatch)); - } else { - batch.getChildBatchs().add(speciesBatch); - } - } - beanToEntitySortingBatch(target, batch, speciesBatch, recorderDepartmentId, - enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, - source.getSpeciesTotalUnsortedWeight(), null, - copyIfNull); - speciesBatch.setRankOrder((short) 1); - } - - // ----------------------------------------------------------------------------- - // Hors Vrac > Benthos : - // ----------------------------------------------------------------------------- - { - SortingBatch benthosBatch = batchChilds.get(enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); - if (benthosBatch == null) { - benthosBatch = SortingBatch.Factory.newInstance(); - batch.getChildBatchs().add(benthosBatch); - } - beanToEntitySortingBatch(target, batch, benthosBatch, recorderDepartmentId, - enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS, - source.getBenthosTotalUnsortedWeight(), null, - copyIfNull); - benthosBatch.setRankOrder((short) 2); - } - - // TODO : plancton, macro déchet... - } - - } - - // ----------------------------------------------------------------------------- - // Unsorted (=rejected) - // ----------------------------------------------------------------------------- - // Unsorted : - SortingBatch unsortedBatch = catchBatchChilds.get(enumeration.QUALITATIVE_UNSORTED_ID); - if (unsortedBatch == null) { - unsortedBatch = SortingBatch.Factory.newInstance(); - target.getChildBatchs().add(unsortedBatch); - } - beanToEntitySortingBatch(target, target, unsortedBatch, recorderDepartmentId, - enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_UNSORTED_ID, - source.getCatchTotalRejectedWeight(), null, - copyIfNull); - unsortedBatch.setRankOrder((short) 3); - - } - - protected Map<Integer, SortingBatch> getChildsMap(Batch parentBatch, Integer pmfmId) { - Map<Integer, SortingBatch> batchByQualitativeValueId = new HashMap<Integer, SortingBatch>(); - if (parentBatch.getChildBatchs() == null) { - return batchByQualitativeValueId; - } - for (Batch childBatch : parentBatch.getChildBatchs()) { - SortingBatch childSortingBatch = (SortingBatch) childBatch; - SortingMeasurement sm = catchBatchDao.getSortingMeasurement((SortingBatch) childBatch, pmfmId, null, false); - if (sm != null && sm.getQualitativeValue() != null && sm.getQualitativeValue().getId() != null) { - batchByQualitativeValueId.put(sm.getQualitativeValue().getId(), childSortingBatch); - } - } - return batchByQualitativeValueId; - } - - /** - * Retrieve child batchs if species is "Life" or "No life" - * (need to retrieve: speciesTotalLivingNotItemizedWeight and speciesTotalInertWeight) - * - * @param parentBatch - * @return - */ - protected Map<Integer, SortingBatch> getChildAliveNotSortedOrInert(Batch parentBatch) { - Map<Integer, SortingBatch> batchByQualitativeValueId = new HashMap<Integer, SortingBatch>(); - if (parentBatch.getChildBatchs() == null) { - return batchByQualitativeValueId; - } - for (Batch childBatch : parentBatch.getChildBatchs()) { - SortingBatch childSortingBatch = (SortingBatch) childBatch; - if (childSortingBatch.getReferenceTaxon() != null && childSortingBatch.getId().intValue() < 0) { - if (enumeration.REFERENCE_TAXON_ID_LIFE.equals(childSortingBatch.getId())) { - batchByQualitativeValueId.put(enumeration.REFERENCE_TAXON_ID_LIFE, childSortingBatch); - } else if (enumeration.REFERENCE_TAXON_ID_LIFE.equals(childSortingBatch.getId())) { - batchByQualitativeValueId.put(enumeration.REFERENCE_TAXON_ID_LIFE, childSortingBatch); - } - } - } - return batchByQualitativeValueId; - } - - protected void beanToEntitySortingBatch( - fr.ifremer.adagio.core.dao.data.batch.CatchBatch rootBatch, - fr.ifremer.adagio.core.dao.data.batch.Batch parentBatch, - fr.ifremer.adagio.core.dao.data.batch.SortingBatch target, - Integer recorderDepartmentId, - Integer sortingPmfmId, - Integer sortingQualitativeValueId, - Float weight, - Float sampleWeight, - boolean copyIfNull) { - - // Create lists to store all updates, then remove not updated items - Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); - if (target.getQuantificationMeasurements() != null) { - notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); - } - Set<SortingMeasurement> notChangedSortingMeasurements = new HashSet<SortingMeasurement>(); - if (target.getSortingMeasurements() != null) { - notChangedSortingMeasurements.addAll(target.getSortingMeasurements()); - } - - // Some mandatory properties : - target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); - target.setRootBatch(rootBatch); - target.setParentBatch(parentBatch); - target.setExhaustiveInventory(true); - - // No taxon or taxon group - target.setReferenceTaxon(null); - target.setTaxonGroup(null); - - // Sorting measurement - if (copyIfNull && (sortingPmfmId == null || sortingQualitativeValueId == null)) { - // Nothing to do : will be removed later, using notChangedSortingMeasurements - } else if (sortingPmfmId != null && sortingQualitativeValueId != null) { - SortingMeasurement sm = setSortingMeasurement(target, recorderDepartmentId, sortingPmfmId, sortingQualitativeValueId); - notChangedSortingMeasurements.remove(sm); - } - - // Sampling Ratio - if (copyIfNull && (sampleWeight == null || weight == null)) { - target.setSamplingRatio(null); - target.setSamplingRatioText(null); - } else if (sampleWeight != null && weight != null) { - String samplingRatioText = weight + "/" + sampleWeight; - samplingRatioText = samplingRatioText.replaceAll(",", "."); - target.setSamplingRatioText(samplingRatioText); - target.setSamplingRatio(weight / sampleWeight); - } - - // Weight - if (copyIfNull && (sampleWeight == null && weight == null)) { - // Nothing to do : will be removed later, using notChangedQuantificationMeasurements - } else if (sampleWeight != null || weight != null) { - Float batchReferenceWeight = weight; - if (batchReferenceWeight == null) { - batchReferenceWeight = sampleWeight; - } - QuantificationMeasurement quantificationMeasurement = catchBatchDao.setQuantificationMeasurement(target, - enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, batchReferenceWeight, true); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } - - // Removed not changed measurements (in sorting and quantification measurement lists) - if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { - for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { - target.getQuantificationMeasurements().remove(qm); - } - } - if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { - for (SortingMeasurement sm : notChangedSortingMeasurements) { - target.getSortingMeasurements().remove(sm); - } - } - } - - protected void beanToEntityReferenceTaxonBatch( - fr.ifremer.adagio.core.dao.data.batch.CatchBatch rootBatch, - fr.ifremer.adagio.core.dao.data.batch.Batch parentBatch, - fr.ifremer.adagio.core.dao.data.batch.SortingBatch target, - Integer recorderDepartmentId, - Integer referenceTaxonId, - Float weight, - Float sampleWeight, - boolean copyIfNull) { - - // Create lists to store all updates, then remove not updated items - Set<QuantificationMeasurement> notChangedQuantificationMeasurements = new HashSet<QuantificationMeasurement>(); - if (target.getQuantificationMeasurements() != null) { - notChangedQuantificationMeasurements.addAll(target.getQuantificationMeasurements()); - } - Set<SortingMeasurement> notChangedSortingMeasurements = new HashSet<SortingMeasurement>(); - if (target.getSortingMeasurements() != null) { - notChangedSortingMeasurements.addAll(target.getSortingMeasurements()); - } - - // Some mandatory properties : - target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); - target.setRootBatch(rootBatch); - target.setParentBatch(parentBatch); - target.setExhaustiveInventory(true); - - // Reference taxon - target.setReferenceTaxon(load(ReferenceTaxonImpl.class, referenceTaxonId)); - target.setTaxonGroup(null); - - // Sampling Ratio - if (copyIfNull && (sampleWeight == null || weight == null)) { - target.setSamplingRatio(null); - target.setSamplingRatioText(null); - } else if (sampleWeight != null && weight != null) { - String samplingRatioText = weight + "/" + sampleWeight; - samplingRatioText = samplingRatioText.replaceAll(",", "."); - target.setSamplingRatioText(samplingRatioText); - target.setSamplingRatio(weight / sampleWeight); - } - - // Weight - if (copyIfNull && (sampleWeight == null && weight == null)) { - // Nothing to do : will be removed later, using notChangedQuantificationMeasurements - } else if (sampleWeight != null || weight != null) { - Float batchReferenceWeight = weight; - if (batchReferenceWeight == null) { - batchReferenceWeight = sampleWeight; - } - QuantificationMeasurement quantificationMeasurement = catchBatchDao.setQuantificationMeasurement(target, - enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, batchReferenceWeight, true); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } - - // Removed not changed measurements (in sorting and quantification measurement lists) - if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { - for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { - target.getQuantificationMeasurements().remove(qm); - } - } - if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { - for (SortingMeasurement sm : notChangedSortingMeasurements) { - target.getSortingMeasurements().remove(sm); - } - } - } - - protected Integer getRecorderDepartmentId() { - // TODO BL : voir si on peut récupérer le departement (du 1er saisisseur ?) - return enumeration.DEPARTMENT_ID_UNKNOWN_RECORDER_DEPARTMENT; - } - - protected void setMeasurement(Measurement measurement, Caracteristic caracteristic, Serializable value) { - if (caracteristic.getCaracteristicType() == CaracteristicType.TEXT) { - measurement.setAlphanumericalValue((String) value); - } else if (caracteristic.getCaracteristicType() == CaracteristicType.NUMBER) { - measurement.setNumericalValue((Float) value); - } else if (caracteristic.getCaracteristicType() == CaracteristicType.QUALITATIVE) { - Integer qvId; - if (value instanceof CaracteristicQualitativeValue) { - qvId = Integer.valueOf(((CaracteristicQualitativeValue) value).getId()); - } else if (value instanceof Integer) { - qvId = (Integer) value; - } - // TODO BL : not used ? => to remove - else { - qvId = Integer.valueOf(value.toString()); - } - QualitativeValue qv = load(QualitativeValueImpl.class, qvId); - measurement.setQualitativeValue(qv); - } - } - - protected SortingMeasurement setSortingMeasurement( - SortingBatch sortingBatch, Integer recorderDepartmentId, - SampleCategoryEnum sampleCategory, Serializable value) { - Preconditions.checkNotNull(sampleCategory); - Preconditions.checkNotNull(value); - - Integer pmfmId = sampleCategory2PmfmId(sampleCategory); - - Caracteristic caracteristic = referentialService.getCaracteristic(pmfmId); - SortingMeasurement sortingMeasurement = catchBatchDao.getSortingMeasurement( - sortingBatch, pmfmId, recorderDepartmentId, true); - setMeasurement(sortingMeasurement, caracteristic, value); - return sortingMeasurement; - } - - protected SortingMeasurement setSortingMeasurement( - SortingBatch sortingBatch, Integer recorderDepartmentId, - Integer pmfmId, Serializable value) { - Preconditions.checkNotNull(pmfmId); - Preconditions.checkNotNull(value); - - Caracteristic caracteristic = referentialService.getCaracteristic(pmfmId); - SortingMeasurement sortingMeasurement = catchBatchDao.getSortingMeasurement( - sortingBatch, pmfmId, recorderDepartmentId, true); - setMeasurement(sortingMeasurement, caracteristic, value); - return sortingMeasurement; - } - - protected Integer sampleCategory2PmfmId(SampleCategoryEnum sampleCategory) { - Integer pmfmId = null; - if (sampleCategory == SampleCategoryEnum.sortedUnsorted) { - pmfmId = enumeration.PMFM_ID_SORTED_UNSORTED; - } else if (sampleCategory == SampleCategoryEnum.size) { - pmfmId = enumeration.PMFM_ID_SIZE_CATEGORY; - } else if (sampleCategory == SampleCategoryEnum.maturity) { - pmfmId = enumeration.PMFM_ID_MATURITY; - } else if (sampleCategory == SampleCategoryEnum.sex) { - pmfmId = enumeration.PMFM_ID_SEX; - } else if (sampleCategory == SampleCategoryEnum.age) { - pmfmId = enumeration.PMFM_ID_AGE; - } - if (pmfmId == null) { - throw new IllegalArgumentException("Unable to find corresponding PMFM.ID for sampleCategory : " + sampleCategory.name()); - } - return pmfmId; - } - -} Added: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceService.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceService.java (rev 0) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceService.java 2013-03-27 21:49:05 UTC (rev 693) @@ -0,0 +1,111 @@ +package fr.ifremer.tutti.persistence.service; + +/* + * #%L + * Tutti :: Persistence + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.TuttiPersistenceServiceImplementor; +import fr.ifremer.tutti.persistence.entities.data.BatchContainer; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import org.springframework.transaction.annotation.Transactional; + +import java.util.List; + +/** + * Service to persist *benthos* {@link SpeciesBatch}. + * + * @author tchemit <chemit(a)codelutin.com> + * @since 1.2 + */ +@Transactional(readOnly = true) +public interface BenthosBatchPersistenceService extends TuttiPersistenceServiceImplementor { + + //------------------------------------------------------------------------// + //-- Benthos Batch methods --// + //------------------------------------------------------------------------// + + /** + * Get all root {@link SpeciesBatch} for the given fishing operation. + * + * Note: All childs of the batch should be loaded here. + * + * + * @param fishingOperationId if of the fishing operation to seek + * @return the list of root {@link SpeciesBatch} + * @since 1.0 + */ + BatchContainer<SpeciesBatch> getRootBenthosBatch(String fishingOperationId); + + @Transactional(readOnly = false) + SpeciesBatch createBenthosBatch(SpeciesBatch bean, String parentBatchId); + + @Transactional(readOnly = false) + SpeciesBatch saveBenthosBatch(SpeciesBatch bean); + + @Transactional(readOnly = false) + void deleteBenthosBatch(String id); + + @Transactional(readOnly = false) + void deleteBenthosSubBatch(String id); + + /** + * Change the species in the given {@code batchId} and in all his + * sub batches. + * + * @param batchId id of the root Benthos batch to treat + * @param species species to affect to all batches + */ + @Transactional(readOnly = false) + void changeBenthosBatchSpecies(String batchId, Species species); + + //------------------------------------------------------------------------// + //-- SpeciesBatchFrequency methods (for benthos) --// + //------------------------------------------------------------------------// + + /** + * Get all frequencies for the given species batch. + * + * @param benthosBatchId the id of the species batch to seek. + * @return the list of frequencies for the given benthos batch id + * @since 1.0 + */ + List<SpeciesBatchFrequency> getAllBenthosBatchFrequency(String benthosBatchId); + + /** + * Save all given {@link SpeciesBatchFrequency} into the given + * {@code benthosBatchId}. If some are not existing then creates them. + * + * Note: This will as a side effect remove all previous + * frequency for this benthos batch. + * + * @param benthosBatchId id of the {@link SpeciesBatch} to use + * @param frequencies list of frequencies to create or update + * @return the persisted list of frequencies + * @since 1.0 + */ + @Transactional(readOnly = false) + List<SpeciesBatchFrequency> saveBenthosBatchFrequency(String benthosBatchId, + List<SpeciesBatchFrequency> frequencies); +} Property changes on: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceService.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Added: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceImpl.java (rev 0) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceImpl.java 2013-03-27 21:49:05 UTC (rev 693) @@ -0,0 +1,334 @@ +package fr.ifremer.tutti.persistence.service; + +/* + * #%L + * Tutti :: Persistence + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import com.google.common.base.Preconditions; +import com.google.common.collect.Lists; +import fr.ifremer.adagio.core.dao.data.batch.Batch; +import fr.ifremer.adagio.core.dao.data.batch.CatchBatchExtendDao; +import fr.ifremer.adagio.core.dao.data.batch.SortingBatch; +import fr.ifremer.tutti.persistence.entities.data.BatchContainer; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.persistence.service.batch.BatchPersistenceHelper; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.hibernate.FlushMode; +import org.springframework.dao.DataIntegrityViolationException; +import org.springframework.stereotype.Service; + +import javax.annotation.Resource; +import java.util.Collection; +import java.util.Collections; +import java.util.List; + +/** + * Default implementation of {@link BenthosBatchPersistenceService}. + * + * @author tchemit <chemit(a)codelutin.com> + * @since 1.2 + */ +@Service("benthosBatchPersistenceService") +public class BenthosBatchPersistenceServiceImpl extends AbstractPersistenceService + implements BenthosBatchPersistenceService { + + /** Logger. */ + private static final Log log = + LogFactory.getLog(BenthosBatchPersistenceServiceImpl.class); + + @Resource(name = "referentialPersistenceService") + protected ReferentialPersistenceService referentialService; + + @Resource(name = "catchBatchDao") + protected CatchBatchExtendDao catchBatchDao; + + @Resource(name = "batchPersistenceHelper") + protected BatchPersistenceHelper batchHelper; + + //------------------------------------------------------------------------// + //-- Benthos Batch methods --// + //------------------------------------------------------------------------// + + @Override + public BatchContainer<SpeciesBatch> getRootBenthosBatch(String fishingOperationId) { + Preconditions.checkNotNull(fishingOperationId); + + // Load batch tree + Integer catchBatchId = catchBatchDao.getIdByFishingOperationId(Integer.valueOf(fishingOperationId)); + Preconditions.checkNotNull(catchBatchId); + + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); + Preconditions.checkNotNull(catchBatch); + + Collection<Batch> catchBatchChils = catchBatch.getChildBatchs(); + + // Vrac / Benthos + SortingBatch vracSpeciesBatch = catchBatchDao.getSortingBatch(catchBatchChils, + "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, + "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); + + BatchContainer<SpeciesBatch> result = new BatchContainer<SpeciesBatch>(); + result.setId(vracSpeciesBatch.getId()); + + for (Batch batch1 : vracSpeciesBatch.getChildBatchs()) { + SortingBatch source = (SortingBatch) batch1; + + // evict some special batches : Life (or Biota) and Inert + if (source.getReferenceTaxon() != null + && !enumeration.REFERENCE_TAXON_ID_LIFE.equals(source.getReferenceTaxon().getId()) + && !enumeration.REFERENCE_TAXON_ID_INERT.equals(source.getReferenceTaxon().getId())) { + + SpeciesBatch target = new SpeciesBatch(); + batchHelper.entityToSpeciesBatch(source, target); + result.addChildren(target); + if (log.isInfoEnabled()) { + log.info("Loaded CatchBatch Vrac > Benthos > " + target.getSpecies().getReferenceTaxonId() + " : " + target.getId()); + } + } + } + + // Hors-Vrac / Benthos + SortingBatch horsVracSpeciesBatch = catchBatchDao.getSortingBatch(catchBatchChils, + "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, + "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); + if (horsVracSpeciesBatch != null) { + for (Batch batch : horsVracSpeciesBatch.getChildBatchs()) { + + SpeciesBatch target = new SpeciesBatch(); + batchHelper.entityToSpeciesBatch((SortingBatch) batch, target); + result.addChildren(target); + if (log.isInfoEnabled()) { + log.info("Loaded CatchBatch Hors Vrac > Benthos > " + target.getSpecies().getReferenceTaxonId() + " : " + target.getId()); + } + } + } + return result; + } + + @Override + public SpeciesBatch createBenthosBatch(SpeciesBatch bean, + String parentBatchId) { + Preconditions.checkNotNull(bean); + Preconditions.checkArgument(bean.getId() == null); + Preconditions.checkNotNull(bean.getSpecies()); + Preconditions.checkNotNull(bean.getSpecies().getId()); + Preconditions.checkNotNull(bean.getFishingOperation()); + Preconditions.checkNotNull(bean.getFishingOperation().getId()); + + getCurrentSession().setFlushMode(FlushMode.COMMIT); + + // Load full batch tree + Integer catchBatchId = catchBatchDao.getIdByFishingOperationId(bean.getFishingOperation().getIdAsInt()); + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); + + SortingBatch batch = SortingBatch.Factory.newInstance(); + benthosBatchToEntity(bean, batch, parentBatchId, catchBatch); + batch = catchBatchDao.createSortingBatch(batch, catchBatch); + + bean.setId(batch.getId()); + + getCurrentSession().flush(); + + return bean; + } + + @Override + public SpeciesBatch saveBenthosBatch(SpeciesBatch bean) { + Preconditions.checkNotNull(bean); + Preconditions.checkNotNull(bean.getId()); + + // Load batch tree + Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(bean.getIdAsInt()); + Preconditions.checkNotNull(catchBatchId); + + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); + Preconditions.checkNotNull(catchBatch); + + getCurrentSession().setFlushMode(FlushMode.COMMIT); + + SortingBatch batch = catchBatchDao.getSortingBatchById(catchBatch, bean.getIdAsInt()); + String parentBatchId = null; + if (bean.getParentBatch() != null) { + parentBatchId = bean.getParentBatch().getId(); + } + benthosBatchToEntity(bean, batch, parentBatchId, catchBatch); + catchBatchDao.updateSortingBatch(batch, catchBatch); + getCurrentSession().flush(); + + return bean; + } + + @Override + public void deleteBenthosBatch(String id) { + Preconditions.checkNotNull(id); + + getCurrentSession().setFlushMode(FlushMode.COMMIT); + + catchBatchDao.removeWithChildren(Integer.valueOf(id)); + + getCurrentSession().flush(); + } + + @Override + public void deleteBenthosSubBatch(String id) { + Preconditions.checkNotNull(id); + deleteBenthosBatch(id); + } + + @Override + public void changeBenthosBatchSpecies(String batchId, Species species) { + + Preconditions.checkNotNull(batchId); + Preconditions.checkNotNull(species); + Preconditions.checkNotNull(species.getReferenceTaxonId()); + + catchBatchDao.setSortingBatchReferenceTaxon(batchId, species.getReferenceTaxonId()); + } + + //------------------------------------------------------------------------// + //-- SpeciesBatchFrequency methods (for benthos) --// + //------------------------------------------------------------------------// + + @Override + public List<SpeciesBatchFrequency> getAllBenthosBatchFrequency(String benthosBatchId) { + List<SpeciesBatchFrequency> results = Lists.newArrayList(); + + Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(Integer.valueOf(benthosBatchId)); + if (catchBatchId == null) { + return results; + } + + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); + + SortingBatch sortingBatch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(benthosBatchId)); + + for (Batch batch : sortingBatch.getChildBatchs()) { + SortingBatch source = (SortingBatch) batch; + SpeciesBatchFrequency target = new SpeciesBatchFrequency(); + + batchHelper.entityToSpeciesBatchFrequency(source, target); + results.add(target); + } + return Collections.unmodifiableList(results); + } + + @Override + public List<SpeciesBatchFrequency> saveBenthosBatchFrequency(String benthosBatchId, + List<SpeciesBatchFrequency> frequencies) { + Preconditions.checkNotNull(benthosBatchId); + Preconditions.checkNotNull(frequencies); + + // Check that all frequencies have the same length PMFM (before doing any db call) + String pmfmId = null; + for (SpeciesBatchFrequency source : frequencies) { + + if (pmfmId == null) { + pmfmId = source.getLengthStepCaracteristic().getId(); + } else if (!pmfmId.equals(source.getLengthStepCaracteristic().getId())) { + throw new DataIntegrityViolationException("Batch frequencies under one Speciesbatch must have all the same lengthStepCaracteristic"); + } + } + + getCurrentSession().setFlushMode(FlushMode.COMMIT); + + Integer sortingBatchId = Integer.valueOf(benthosBatchId); + Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(sortingBatchId); + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); + + if (catchBatch == null) { + return frequencies; + } + + // Retrieve parent + SortingBatch parentBatch = catchBatchDao.getSortingBatchById(catchBatch, sortingBatchId); + + // Remember child ids, to remove unchanged item (see at bottom in this method) + List<Integer> notUpdatedChildIds = Lists.newArrayList(); + for (Batch batch : parentBatch.getChildBatchs()) { + SortingBatch sortingBatch = (SortingBatch) batch; + notUpdatedChildIds.add(sortingBatch.getId()); + } + + short rankOrder = 0; + List<SortingBatch> batchsToUpdate = Lists.newArrayList(); + for (SpeciesBatchFrequency source : frequencies) { + rankOrder++; + + // Not existing batch + SortingBatch target; + if (source.getId() == null) { + target = SortingBatch.Factory.newInstance(); + + // Fill the sorting batch from the source + batchHelper.speciesBatchFrequencyToEntity(source, target, parentBatch, rankOrder); + + // Create the targeted batch, then update the source id + catchBatchDao.createSortingBatch(target, catchBatch); + source.setId(target.getId()); + } + + // Existing batch + else { + target = catchBatchDao.getSortingBatchById(catchBatch, source.getIdAsInt()); + + // Fill the sorting batch from the source + batchHelper.speciesBatchFrequencyToEntity(source, target, parentBatch, rankOrder); + + // Add the batch into a list (will be update later, using this list) + batchsToUpdate.add(target); + + notUpdatedChildIds.remove(target.getId()); + } + } + + // If some batchs need to be update, do it + if (batchsToUpdate.size() > 0) { + catchBatchDao.updateSortingBatch(batchsToUpdate, catchBatch); + } + + if (notUpdatedChildIds.size() > 0) { + for (Integer batchId : notUpdatedChildIds) { + catchBatchDao.removeWithChildren(batchId, catchBatch); + } + } + + getCurrentSession().flush(); + + return Collections.unmodifiableList(frequencies); + } + + + //------------------------------------------------------------------------// + //-- Internal methods --// + //------------------------------------------------------------------------// + + protected void benthosBatchToEntity(SpeciesBatch source, + SortingBatch target, + String parentBatchId, + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch) { + batchHelper.speciesBatchToEntity(source, target, parentBatchId, catchBatch, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); + } +} Property changes on: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceImpl.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Copied: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceService.java (from rev 684, trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceService.java) =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceService.java (rev 0) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceService.java 2013-03-27 21:49:05 UTC (rev 693) @@ -0,0 +1,67 @@ +package fr.ifremer.tutti.persistence.service; + +/* + * #%L + * Tutti :: Persistence + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + + +import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidationException; +import fr.ifremer.tutti.persistence.TuttiPersistenceServiceImplementor; +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import org.springframework.transaction.annotation.Transactional; + +@Transactional(readOnly = true) +public interface CatchBatchPersistenceService extends TuttiPersistenceServiceImplementor { + + //------------------------------------------------------------------------// + //-- CatchBatch methods --// + //------------------------------------------------------------------------// + + /** + * Get the catchBatch from the fishing Operation id. + * + * @param fishingOperationId id of the fihsing operation + * @return found catchBatch + * @throws CatchBatchValidationException + */ + CatchBatch getCatchBatchFromFishingOperation(String fishingOperationId) throws CatchBatchValidationException; + + /** + * Create the given CatchBatch and return it. + * + * @param bean catchBatch to create + * @return created catchBatch + */ + @Transactional(readOnly = false) + CatchBatch createCatchBatch(CatchBatch bean); + + /** + * Save the given catchBatch and return it. + * + * @param bean batch to save + * @return the saved catchBatch + */ + @Transactional(readOnly = false) + CatchBatch saveCatchBatch(CatchBatch bean); + +} \ No newline at end of file Copied: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceImpl.java (from rev 684, trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceImpl.java) =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceImpl.java (rev 0) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceImpl.java 2013-03-27 21:49:05 UTC (rev 693) @@ -0,0 +1,686 @@ +package fr.ifremer.tutti.persistence.service; + +/* + * #%L + * Tutti :: Persistence + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + + +import com.google.common.base.Preconditions; +import com.google.common.collect.Lists; +import com.google.common.collect.Maps; +import com.google.common.collect.Sets; +import fr.ifremer.adagio.core.dao.data.batch.Batch; +import fr.ifremer.adagio.core.dao.data.batch.CatchBatchExtendDao; +import fr.ifremer.adagio.core.dao.data.batch.SortingBatch; +import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidationException; +import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidator; +import fr.ifremer.adagio.core.dao.data.measure.QuantificationMeasurement; +import fr.ifremer.adagio.core.dao.data.measure.SortingMeasurement; +import fr.ifremer.adagio.core.dao.data.operation.FishingOperationImpl; +import fr.ifremer.adagio.core.dao.referential.QualityFlagImpl; +import fr.ifremer.adagio.core.dao.referential.taxon.ReferenceTaxonImpl; +import fr.ifremer.adagio.core.dao.technical.synchronization.SynchronizationStatus; +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import fr.ifremer.tutti.persistence.service.batch.BatchPersistenceHelper; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.hibernate.FlushMode; +import org.hibernate.type.IntegerType; +import org.springframework.dao.DataIntegrityViolationException; +import org.springframework.dao.DataRetrievalFailureException; +import org.springframework.stereotype.Service; + +import javax.annotation.Resource; +import java.util.Collection; +import java.util.Map; +import java.util.Set; + +@Service("batchPersistenceService") +public class CatchBatchPersistenceServiceImpl + extends AbstractPersistenceService implements CatchBatchPersistenceService { + + /** Logger. */ + private static final Log log = + LogFactory.getLog(CatchBatchPersistenceServiceImpl.class); + + @Resource(name = "referentialPersistenceService") + protected ReferentialPersistenceService referentialService; + + @Resource(name = "catchBatchDao") + protected CatchBatchExtendDao catchBatchDao; + + @Resource(name = "scientificCruiseCatchBatchValidator") + protected CatchBatchValidator catchBatchValidator; + + @Resource(name = "batchPersistenceHelper") + protected BatchPersistenceHelper batchHelper; + + @Override + public void init() { + super.init(); + catchBatchDao.registerCatchBatchValidator(catchBatchValidator); + } + + @Override + public void close() { + catchBatchDao.unregisterCatchBatchValidator(catchBatchValidator); + super.close(); + } + + //------------------------------------------------------------------------// + //-- CatchBatch methods --// + //------------------------------------------------------------------------// + + @Override + public CatchBatch getCatchBatchFromFishingOperation(String fishingOperationId) throws CatchBatchValidationException { + Preconditions.checkNotNull(fishingOperationId); + + Integer catchBatchId = catchBatchDao.getIdByFishingOperationId(Integer.valueOf(fishingOperationId)); + Preconditions.checkNotNull(catchBatchId); + + // wenever want to repair anything from Tutti + fr.ifremer.adagio.core.dao.data.batch.CatchBatch source = catchBatchDao.loadFullTree(catchBatchId, true, false); + + CatchBatch result = new CatchBatch(); + result.setId(source.getId()); + result.setCatchTotalWeight(source.getWeight()); + + if (log.isInfoEnabled()) { + log.info("Loaded CatchBatch: " + result.getId()); + } + + // Vrac + SortingBatch vracBatch = catchBatchDao.getSortingBatch(source.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID); + if (log.isInfoEnabled()) { + log.info("Loaded CatchBatch Vrac: " + vracBatch.getId()); + } + result.setCatchTotalSortedCarousselWeight(vracBatch.getWeight()); + result.setCatchTotalSortedTremisWeight(vracBatch.getWeightBeforeSampling()); + { + // Vrac > Species + SortingBatch speciesBatch = catchBatchDao.getSortingBatch(vracBatch.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + + if (log.isInfoEnabled()) { + log.info("Loaded CatchBatch Vrac > Species : " + speciesBatch.getId()); + } + + result.setSpeciesTotalSampleSortedWeight(speciesBatch.getWeight()); + result.setSpeciesTotalSortedWeight(speciesBatch.getWeightBeforeSampling()); + + { + // Vrac > Species > Inert + SortingBatch inertBatch = catchBatchDao.getSortingBatch(speciesBatch.getChildBatchs(), + "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_INERT); + + if (log.isInfoEnabled()) { + log.info("Loaded CatchBatch Vrac > Species > Inert: " + inertBatch.getId()); + } + if (inertBatch != null) { + result.setSpeciesTotalInertWeight(inertBatch.getWeight()); + } + + // Vrac > Species > Alive no itemized + SortingBatch livingNotItemizedBatch = catchBatchDao.getSortingBatch(speciesBatch.getChildBatchs(), + "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_LIFE); + if (log.isInfoEnabled()) { + log.info("Loaded CatchBatch Vrac > Species > Alive not itemized: " + livingNotItemizedBatch.getId()); + } + if (livingNotItemizedBatch != null) { + result.setSpeciesTotalLivingNotItemizedWeight(livingNotItemizedBatch.getWeight()); + } + } + + // Vrac > Benthos + SortingBatch benthosBatch = catchBatchDao.getSortingBatch(vracBatch.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); + + if (log.isInfoEnabled()) { + log.info("Loaded CatchBatch Vrac > Benthos: " + benthosBatch.getId()); + } + + result.setBenthosTotalSampleSortedWeight(benthosBatch.getWeight()); + result.setBenthosTotalSortedWeight(benthosBatch.getWeightBeforeSampling()); + + { + // Vrac > Benthos > Inert + SortingBatch inertBatch = catchBatchDao.getSortingBatch(benthosBatch.getChildBatchs(), + "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_INERT); + if (log.isInfoEnabled()) { + log.info("Loaded CatchBatch Vrac > Benthos > Inert: " + inertBatch.getId()); + } + if (inertBatch != null) { + result.setBenthosTotalInertWeight(inertBatch.getWeight()); + } + + // Vrac > Benthos > Alive no itemized + SortingBatch livingNotItemizedBatch = catchBatchDao.getSortingBatch(benthosBatch.getChildBatchs(), + "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_LIFE); + if (log.isInfoEnabled()) { + log.info("Loaded CatchBatch Vrac > Benthos > Alive not itemized: " + livingNotItemizedBatch.getId()); + } + if (livingNotItemizedBatch != null) { + result.setBenthosTotalLivingNotItemizedWeight(livingNotItemizedBatch.getWeight()); + } + } + + // TODO : Plancton... + } + + // Hors Vrac + SortingBatch horsVracBatch = catchBatchDao.getSortingBatch(source.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID); + if (log.isInfoEnabled()) { + log.info("Loaded CatchBatch Hors Vrac: " + horsVracBatch.getId()); + } + if (horsVracBatch != null) { + result.setCatchTotalUnsortedWeight(horsVracBatch.getWeight()); + { + // Hors Vrac > Species + SortingBatch speciesBatch = catchBatchDao.getSortingBatch(horsVracBatch.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + + if (speciesBatch != null) { + if (log.isInfoEnabled()) { + log.info("Loaded CatchBatch Hors Vrac> Species: " + speciesBatch.getId()); + } + result.setSpeciesTotalUnsortedWeight(speciesBatch.getWeight()); + } + + // Hors Vrac > Benthos + SortingBatch benthosBatch = catchBatchDao.getSortingBatch(horsVracBatch.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); + + + if (benthosBatch != null) { + if (log.isInfoEnabled()) { + log.info("Loaded CatchBatch Hors Vrac> Benthos: " + benthosBatch.getId()); + } + result.setBenthosTotalUnsortedWeight(benthosBatch.getWeight()); + } + + // TODO : Plancton... + } + } + + // Non trié + SortingBatch unsortedBatch = catchBatchDao.getSortingBatch(source.getChildBatchs(), + "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_UNSORTED_ID); + if (log.isInfoEnabled()) { + log.info("Loaded CatchBatch Unsorted: " + unsortedBatch.getId()); + } + if (unsortedBatch != null) { + result.setCatchTotalRejectedWeight(unsortedBatch.getWeight()); + } + + return result; + } + + @Override + public CatchBatch createCatchBatch(CatchBatch bean) { + Preconditions.checkNotNull(bean); + Preconditions.checkArgument(bean.getId() == null); + Preconditions.checkNotNull(bean.getFishingOperation()); + Preconditions.checkNotNull(bean.getFishingOperation().getId()); + + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = fr.ifremer.adagio.core.dao.data.batch.CatchBatch.Factory.newInstance(); + catchBatchToEntity(bean, catchBatch); + catchBatch = catchBatchDao.create(catchBatch); + bean.setId(catchBatch.getId()); + + // Link to fishing operation + getCurrentSession().flush(); + Integer fishingOperationId = bean.getFishingOperation().getIdAsInt(); + int rowUpdated = queryUpdate("updateFishingOperationCatchBatch", + "fishingOperationId", IntegerType.INSTANCE, fishingOperationId, + "catchBatchId", IntegerType.INSTANCE, catchBatch.getId()); + if (rowUpdated == 0) { + throw new DataIntegrityViolationException("Could not attach catch batch to the given operation : operation was not found."); + } + + return bean; + } + + @Override + public CatchBatch saveCatchBatch(CatchBatch bean) { + + Preconditions.checkNotNull(bean); + Preconditions.checkNotNull(bean.getId()); + Preconditions.checkNotNull(bean.getFishingOperation()); + Preconditions.checkNotNull(bean.getFishingOperation().getId()); + + getCurrentSession().enableFetchProfile("batch-with-childs"); + getCurrentSession().setFlushMode(FlushMode.COMMIT); + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.load(bean.getIdAsInt()); + if (catchBatch == null) { + throw new DataRetrievalFailureException("Could not retrieve catch batch with id=" + bean.getId()); + } + + catchBatchToEntity(bean, catchBatch); + catchBatchDao.update(catchBatch); + getCurrentSession().flush(); + + return bean; + } + + //------------------------------------------------------------------------// + //-- Internal methods --// + //------------------------------------------------------------------------// + + protected void catchBatchToEntity(CatchBatch source, + fr.ifremer.adagio.core.dao.data.batch.CatchBatch target) { + Preconditions.checkNotNull(source.getFishingOperation()); + Preconditions.checkNotNull(source.getFishingOperation().getId()); + + // Retrieve recorder department + Integer recorderDepartmentId = getRecorderDepartmentId(); + + // First initialization (when created) + Integer fishingOperationId = source.getFishingOperation().getIdAsInt(); + target.setFishingOperation(load(FishingOperationImpl.class, fishingOperationId)); + + target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); + target.setRankOrder((short) 1); + target.setSynchronizationStatus(SynchronizationStatus.DIRTY.getValue()); + + // Create lists to store all updates, then remove not updated items + Collection<QuantificationMeasurement> quantificationMeasurements = target.getQuantificationMeasurements(); + Set<QuantificationMeasurement> notChangedQuantificationMeasurements = Sets.newHashSet(); + if (quantificationMeasurements != null) { + notChangedQuantificationMeasurements.addAll(quantificationMeasurements); + } + + // Total Weight + if (source.getCatchTotalWeight() == null) { + // Nothing to do : will be removed later, using notChangedQuantificationMeasurements + } else { + QuantificationMeasurement quantificationMeasurement = catchBatchDao.setQuantificationMeasurement(target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getCatchTotalWeight(), true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } + + // Removed not changed measurements (in sorting and quantification measurement lists) + if (quantificationMeasurements != null) { + quantificationMeasurements.removeAll(notChangedQuantificationMeasurements); + } +// if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { +// for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { +// target.getQuantificationMeasurements().remove(qm); +// } +// } + Map<Integer, SortingBatch> catchBatchChilds = getChildsMap(target, enumeration.PMFM_ID_SORTED_UNSORTED); + + // ----------------------------------------------------------------------------- + // Vrac + // ----------------------------------------------------------------------------- + { + SortingBatch batch = catchBatchChilds.get(enumeration.QUALITATIVE_VRAC_ID); + if (batch == null) { + batch = SortingBatch.Factory.newInstance(); + target.getChildBatchs().add(batch); + } + beanToEntitySortingBatch(target, target, batch, recorderDepartmentId, + enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, + source.getCatchTotalSortedCarousselWeight(), source.getCatchTotalSortedTremisWeight()); + batch.setRankOrder((short) 1); + + // Manage childs : + { + if (batch.getChildBatchs() == null) { + batch.setChildBatchs(Lists.<Batch>newArrayList()); + } + + Map<Integer, SortingBatch> batchChilds = getChildsMap(batch, enumeration.PMFM_ID_SORTING_TYPE); + + // ----------------------------------------------------------------------------- + // Vrac / Species + // ----------------------------------------------------------------------------- + SortingBatch speciesBatch = batchChilds.get(enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + + if (speciesBatch == null) { + speciesBatch = SortingBatch.Factory.newInstance(); + batch.getChildBatchs().add(speciesBatch); + } + beanToEntitySortingBatch(target, batch, speciesBatch, recorderDepartmentId, + enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, + source.getSpeciesTotalSampleSortedWeight(), source.getSpeciesTotalSortedWeight()); + speciesBatch.setRankOrder((short) 1); + + { + if (speciesBatch.getChildBatchs() == null) { + speciesBatch.setChildBatchs(Lists.<Batch>newArrayList()); + } + // ----------------------------------------------------------------------------- + // Vrac / Species / Alive not itemized + // ----------------------------------------------------------------------------- + + SortingBatch aliveNotItemizedBatch = catchBatchDao.getSortingBatch(speciesBatch.getChildBatchs(), "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_LIFE); + if (aliveNotItemizedBatch == null) { + aliveNotItemizedBatch = SortingBatch.Factory.newInstance(); + speciesBatch.getChildBatchs().add(aliveNotItemizedBatch); + } + beanToEntityReferenceTaxonBatch(target, speciesBatch, aliveNotItemizedBatch, recorderDepartmentId, + enumeration.REFERENCE_TAXON_ID_LIFE, + source.getSpeciesTotalLivingNotItemizedWeight(), null); + aliveNotItemizedBatch.setRankOrder((short) 1); + + // ----------------------------------------------------------------------------- + // Vrac / Species / Inert (not alive) + // ----------------------------------------------------------------------------- + SortingBatch inertBatch = catchBatchDao.getSortingBatch(speciesBatch.getChildBatchs(), "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_INERT); + if (inertBatch == null) { + inertBatch = SortingBatch.Factory.newInstance(); + speciesBatch.getChildBatchs().add(inertBatch); + } + beanToEntityReferenceTaxonBatch(target, speciesBatch, inertBatch, recorderDepartmentId, + enumeration.REFERENCE_TAXON_ID_INERT, + source.getSpeciesTotalInertWeight(), null); + inertBatch.setRankOrder((short) 2); + } + + // ----------------------------------------------------------------------------- + // Vrac > Benthos + // ----------------------------------------------------------------------------- + + SortingBatch benthosBatch = batchChilds.get(enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); + if (benthosBatch == null) { + benthosBatch = SortingBatch.Factory.newInstance(); + batch.getChildBatchs().add(benthosBatch); + } + beanToEntitySortingBatch(target, batch, benthosBatch, recorderDepartmentId, + enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS, + source.getBenthosTotalSampleSortedWeight(), source.getBenthosTotalSortedWeight()); + benthosBatch.setRankOrder((short) 2); + + { + + if (benthosBatch.getChildBatchs() == null) { + benthosBatch.setChildBatchs(Lists.<Batch>newArrayList()); + } + + // ----------------------------------------------------------------------------- + // Vrac / Benthos / Alive not itemized + // ----------------------------------------------------------------------------- + + SortingBatch aliveNotItemizedBatch = catchBatchDao.getSortingBatch(benthosBatch.getChildBatchs(), "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_LIFE); + if (aliveNotItemizedBatch == null) { + aliveNotItemizedBatch = SortingBatch.Factory.newInstance(); + benthosBatch.getChildBatchs().add(aliveNotItemizedBatch); + } + beanToEntityReferenceTaxonBatch(target, benthosBatch, aliveNotItemizedBatch, recorderDepartmentId, + enumeration.REFERENCE_TAXON_ID_LIFE, + source.getBenthosTotalLivingNotItemizedWeight(), null); + aliveNotItemizedBatch.setRankOrder((short) 1); + + // ----------------------------------------------------------------------------- + // Vrac / Species / Inert (not alive) + // ----------------------------------------------------------------------------- + + SortingBatch inertBatch = catchBatchDao.getSortingBatch(benthosBatch.getChildBatchs(), "referenceTaxonId", enumeration.REFERENCE_TAXON_ID_INERT); + if (inertBatch == null) { + inertBatch = SortingBatch.Factory.newInstance(); + benthosBatch.getChildBatchs().add(inertBatch); + } + beanToEntityReferenceTaxonBatch(target, benthosBatch, inertBatch, recorderDepartmentId, + enumeration.REFERENCE_TAXON_ID_INERT, + source.getBenthosTotalInertWeight(), null); + inertBatch.setRankOrder((short) 2); + } + + // TODO plancton, macro déchet... + } + } + + // ----------------------------------------------------------------------------- + // Hors Vrac + // ----------------------------------------------------------------------------- + { + SortingBatch batch = catchBatchChilds.get(enumeration.QUALITATIVE_HORS_VRAC_ID); + if (batch == null) { + batch = SortingBatch.Factory.newInstance(); + target.getChildBatchs().add(batch); + } + beanToEntitySortingBatch(target, target, batch, recorderDepartmentId, + enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, + source.getCatchTotalUnsortedWeight(), null); + batch.setRankOrder((short) 2); + + // Manage childs : + { + Map<Integer, SortingBatch> batchChilds = getChildsMap(batch, enumeration.PMFM_ID_SORTING_TYPE); + + // ----------------------------------------------------------------------------- + // Hors Vrac > Species : + // ----------------------------------------------------------------------------- + { + SortingBatch speciesBatch = batchChilds.get(enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + if (speciesBatch == null) { + speciesBatch = SortingBatch.Factory.newInstance(); + if (batch.getChildBatchs() == null) { + batch.setChildBatchs(Lists.newArrayList((Batch) speciesBatch)); + } else { + batch.getChildBatchs().add(speciesBatch); + } + } + beanToEntitySortingBatch(target, batch, speciesBatch, recorderDepartmentId, + enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, + source.getSpeciesTotalUnsortedWeight(), null); + speciesBatch.setRankOrder((short) 1); + } + + // ----------------------------------------------------------------------------- + // Hors Vrac > Benthos : + // ----------------------------------------------------------------------------- + { + SortingBatch benthosBatch = batchChilds.get(enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); + if (benthosBatch == null) { + benthosBatch = SortingBatch.Factory.newInstance(); + batch.getChildBatchs().add(benthosBatch); + } + beanToEntitySortingBatch(target, batch, benthosBatch, recorderDepartmentId, + enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS, + source.getBenthosTotalUnsortedWeight(), null); + benthosBatch.setRankOrder((short) 2); + } + + // TODO : plancton, macro déchet... + } + + } + + // ----------------------------------------------------------------------------- + // Unsorted (=rejected) + // ----------------------------------------------------------------------------- + // Unsorted : + SortingBatch unsortedBatch = catchBatchChilds.get(enumeration.QUALITATIVE_UNSORTED_ID); + if (unsortedBatch == null) { + unsortedBatch = SortingBatch.Factory.newInstance(); + target.getChildBatchs().add(unsortedBatch); + } + beanToEntitySortingBatch(target, target, unsortedBatch, recorderDepartmentId, + enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_UNSORTED_ID, + source.getCatchTotalRejectedWeight(), null); + unsortedBatch.setRankOrder((short) 3); + + } + + protected Map<Integer, SortingBatch> getChildsMap(Batch parentBatch, Integer pmfmId) { + Map<Integer, SortingBatch> batchByQualitativeValueId = Maps.newHashMap(); + if (parentBatch.getChildBatchs() == null) { + return batchByQualitativeValueId; + } + for (Batch childBatch : parentBatch.getChildBatchs()) { + SortingBatch childSortingBatch = (SortingBatch) childBatch; + SortingMeasurement sm = catchBatchDao.getSortingMeasurement((SortingBatch) childBatch, pmfmId, null, false); + if (sm != null && sm.getQualitativeValue() != null && sm.getQualitativeValue().getId() != null) { + batchByQualitativeValueId.put(sm.getQualitativeValue().getId(), childSortingBatch); + } + } + return batchByQualitativeValueId; + } + + protected void beanToEntitySortingBatch( + fr.ifremer.adagio.core.dao.data.batch.CatchBatch rootBatch, + fr.ifremer.adagio.core.dao.data.batch.Batch parentBatch, + fr.ifremer.adagio.core.dao.data.batch.SortingBatch target, + Integer recorderDepartmentId, + Integer sortingPmfmId, + Integer sortingQualitativeValueId, + Float weight, + Float sampleWeight) { + + Collection<QuantificationMeasurement> quantificationMeasurements = target.getQuantificationMeasurements(); + Collection<SortingMeasurement> sortingMeasurements = target.getSortingMeasurements(); + + // Create lists to store all updates, then remove not updated items + Set<QuantificationMeasurement> notChangedQuantificationMeasurements = Sets.newHashSet(); + if (quantificationMeasurements != null) { + notChangedQuantificationMeasurements.addAll(quantificationMeasurements); + } + Set<SortingMeasurement> notChangedSortingMeasurements = Sets.newHashSet(); + if (sortingMeasurements != null) { + notChangedSortingMeasurements.addAll(sortingMeasurements); + } + + // Some mandatory properties : + target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); + target.setRootBatch(rootBatch); + target.setParentBatch(parentBatch); + target.setExhaustiveInventory(true); + + // No taxon or taxon group + target.setReferenceTaxon(null); + target.setTaxonGroup(null); + + // Sorting measurement + if (sortingPmfmId == null || sortingQualitativeValueId == null) { + // Nothing to do : will be removed later, using notChangedSortingMeasurements + } else { + SortingMeasurement sm = batchHelper.setSortingMeasurement(target, recorderDepartmentId, sortingPmfmId, sortingQualitativeValueId); + notChangedSortingMeasurements.remove(sm); + } + + // Sampling Ratio + if (sampleWeight == null || weight == null) { + target.setSamplingRatio(null); + target.setSamplingRatioText(null); + } else { + String samplingRatioText = weight + "/" + sampleWeight; + samplingRatioText = samplingRatioText.replaceAll(",", "."); + target.setSamplingRatioText(samplingRatioText); + target.setSamplingRatio(weight / sampleWeight); + } + + // Weight + if (sampleWeight == null && weight == null) { + // Nothing to do : will be removed later, using notChangedQuantificationMeasurements + } else { + Float batchReferenceWeight = weight; + if (batchReferenceWeight == null) { + batchReferenceWeight = sampleWeight; + } + QuantificationMeasurement quantificationMeasurement = catchBatchDao.setQuantificationMeasurement(target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, batchReferenceWeight, true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } + + // Removed not changed measurements (in sorting and quantification measurement lists) + if (quantificationMeasurements != null) { + quantificationMeasurements.removeAll(notChangedQuantificationMeasurements); + } + if (sortingMeasurements != null) { + sortingMeasurements.removeAll(notChangedSortingMeasurements); + } + } + + protected void beanToEntityReferenceTaxonBatch( + fr.ifremer.adagio.core.dao.data.batch.CatchBatch rootBatch, + fr.ifremer.adagio.core.dao.data.batch.Batch parentBatch, + fr.ifremer.adagio.core.dao.data.batch.SortingBatch target, + Integer recorderDepartmentId, + Integer referenceTaxonId, + Float weight, + Float sampleWeight) { + + Collection<QuantificationMeasurement> quantificationMeasurements = target.getQuantificationMeasurements(); + Collection<SortingMeasurement> sortingMeasurements = target.getSortingMeasurements(); + + // Create lists to store all updates, then remove not updated items + Set<QuantificationMeasurement> notChangedQuantificationMeasurements = Sets.newHashSet(); + if (quantificationMeasurements != null) { + notChangedQuantificationMeasurements.addAll(quantificationMeasurements); + } + Set<SortingMeasurement> notChangedSortingMeasurements = Sets.newHashSet(); + if (sortingMeasurements != null) { + notChangedSortingMeasurements.addAll(sortingMeasurements); + } + + // Some mandatory properties : + target.setQualityFlag(load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED)); + target.setRootBatch(rootBatch); + target.setParentBatch(parentBatch); + target.setExhaustiveInventory(true); + + // Reference taxon + target.setReferenceTaxon(load(ReferenceTaxonImpl.class, referenceTaxonId)); + target.setTaxonGroup(null); + + // Sampling Ratio + if ((sampleWeight == null || weight == null)) { + target.setSamplingRatio(null); + target.setSamplingRatioText(null); + } else { + String samplingRatioText = weight + "/" + sampleWeight; + samplingRatioText = samplingRatioText.replaceAll(",", "."); + target.setSamplingRatioText(samplingRatioText); + target.setSamplingRatio(weight / sampleWeight); + } + + // Weight + if ((sampleWeight == null && weight == null)) { + // Nothing to do : will be removed later, using notChangedQuantificationMeasurements + } else { + Float batchReferenceWeight = weight; + if (batchReferenceWeight == null) { + batchReferenceWeight = sampleWeight; + } + QuantificationMeasurement quantificationMeasurement = catchBatchDao.setQuantificationMeasurement(target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, batchReferenceWeight, true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } + + // Removed not changed measurements (in sorting and quantification measurement lists) + if (quantificationMeasurements != null) { + quantificationMeasurements.removeAll(notChangedQuantificationMeasurements); + } + if (sortingMeasurements != null) { + sortingMeasurements.removeAll(notChangedSortingMeasurements); + } + } + + protected Integer getRecorderDepartmentId() { + // TODO BL : voir si on peut récupérer le departement (du 1er saisisseur ?) + return enumeration.DEPARTMENT_ID_UNKNOWN_RECORDER_DEPARTMENT; + } +} Added: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceService.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceService.java (rev 0) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceService.java 2013-03-27 21:49:05 UTC (rev 693) @@ -0,0 +1,111 @@ +package fr.ifremer.tutti.persistence.service; + +/* + * #%L + * Tutti :: Persistence + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.TuttiPersistenceServiceImplementor; +import fr.ifremer.tutti.persistence.entities.data.BatchContainer; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import org.springframework.transaction.annotation.Transactional; + +import java.util.List; + +/** + * Service to persist *species* {@link SpeciesBatch}. + * + * @author tchemit <chemit(a)codelutin.com> + * @since 1.2 + */ +@Transactional(readOnly = true) +public interface SpeciesBatchPersistenceService extends TuttiPersistenceServiceImplementor { + + //------------------------------------------------------------------------// + //-- SpeciesBatch methods --// + //------------------------------------------------------------------------// + + /** + * Get the batch parent of all root {@link SpeciesBatch} for the given + * fishing operation. + * + * Note: All childs of the batch should be loaded here. + * + * @param fishingOperationId if of the fishing operation to seek + * @return the list of root {@link SpeciesBatch} + * @since 1.0.2 + */ + BatchContainer<SpeciesBatch> getRootSpeciesBatch(String fishingOperationId); + + @Transactional(readOnly = false) + SpeciesBatch createSpeciesBatch(SpeciesBatch bean, String parentBatchId); + + @Transactional(readOnly = false) + SpeciesBatch saveSpeciesBatch(SpeciesBatch bean); + + @Transactional(readOnly = false) + void deleteSpeciesBatch(String id); + + @Transactional(readOnly = false) + void deleteSpeciesSubBatch(String id); + + /** + * Change the species in the given {@code batchId} and in all his + * sub batches. + * + * @param batchId id of the root species batch to treat + * @param species species to affect to all batches + */ + @Transactional(readOnly = false) + void changeSpeciesBatchSpecies(String batchId, Species species); + + //------------------------------------------------------------------------// + //-- SpeciesBatchFrequency methods (for species) --// + //------------------------------------------------------------------------// + + /** + * Get all frequencies for the given species batch. + * + * @param speciesBatchId the id of the species batch to seek. + * @return the list of frequencies for the given specues batch id + * @since 1.0 + */ + List<SpeciesBatchFrequency> getAllSpeciesBatchFrequency(String speciesBatchId); + + /** + * Save all given {@link SpeciesBatchFrequency} into the given + * {@code speciesBatchId}. If some are not existing then creates them. + * + * Note: This will as a side effect remove all previous frequency for this species batch. + * + * @param speciesBatchId id of the {@link SpeciesBatch} to use + * @param frequencies list of frequencies to create or update + * @return the persisted list of frequencies + * @since 1.0 + */ + @Transactional(readOnly = false) + List<SpeciesBatchFrequency> saveSpeciesBatchFrequency(String speciesBatchId, + List<SpeciesBatchFrequency> frequencies); + +} Property changes on: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceService.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Added: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceImpl.java (rev 0) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceImpl.java 2013-03-27 21:49:05 UTC (rev 693) @@ -0,0 +1,369 @@ +package fr.ifremer.tutti.persistence.service; + +/* + * #%L + * Tutti :: Persistence + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import com.google.common.base.Preconditions; +import com.google.common.collect.Lists; +import fr.ifremer.adagio.core.dao.data.batch.Batch; +import fr.ifremer.adagio.core.dao.data.batch.CatchBatchExtendDao; +import fr.ifremer.adagio.core.dao.data.batch.SortingBatch; +import fr.ifremer.tutti.persistence.entities.data.BatchContainer; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.persistence.service.batch.BatchPersistenceHelper; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.hibernate.FlushMode; +import org.springframework.dao.DataIntegrityViolationException; +import org.springframework.stereotype.Service; + +import javax.annotation.Resource; +import java.util.Collection; +import java.util.Collections; +import java.util.List; + +/** + * Default implementation of {@link SpeciesBatchPersistenceService}. + * + * @author tchemit <chemit(a)codelutin.com> + * @since 1.2 + */ +@Service("speciesBatchPersistenceService") +public class SpeciesBatchPersistenceServiceImpl extends AbstractPersistenceService + implements SpeciesBatchPersistenceService { + + /** Logger. */ + private static final Log log = + LogFactory.getLog(SpeciesBatchPersistenceServiceImpl.class); + + @Resource(name = "catchBatchDao") + protected CatchBatchExtendDao catchBatchDao; + + @Resource(name = "batchPersistenceHelper") + protected BatchPersistenceHelper batchHelper; + + //------------------------------------------------------------------------// + //-- SpeciesBatch methods --// + //------------------------------------------------------------------------// + + @Override + public BatchContainer<SpeciesBatch> getRootSpeciesBatch(String fishingOperationId) { + Preconditions.checkNotNull(fishingOperationId); + + // Load batch tree + Integer catchBatchId = catchBatchDao.getIdByFishingOperationId(Integer.valueOf(fishingOperationId)); + Preconditions.checkNotNull(catchBatchId); + + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); + Preconditions.checkNotNull(catchBatch); + + Collection<Batch> catchBatchChilds = catchBatch.getChildBatchs(); + // Vrac / Species + SortingBatch vracSpeciesBatch = catchBatchDao.getSortingBatch(catchBatchChilds, + "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, + "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + + // container of speciesBatch is arbitraty put on vrac type (there is + // no common ancestor for all species batch). + BatchContainer<SpeciesBatch> result = new BatchContainer<SpeciesBatch>(); + result.setId(vracSpeciesBatch.getId()); + + for (Batch batch1 : vracSpeciesBatch.getChildBatchs()) { + SortingBatch source = (SortingBatch) batch1; + + // evict some special batches : Life (or Biota) and Inert + if (source.getReferenceTaxon() != null + && !enumeration.REFERENCE_TAXON_ID_LIFE.equals(source.getReferenceTaxon().getId()) + && !enumeration.REFERENCE_TAXON_ID_INERT.equals(source.getReferenceTaxon().getId())) { + + SpeciesBatch target = new SpeciesBatch(); + batchHelper.entityToSpeciesBatch(source, target); + result.addChildren(target); + + if (log.isInfoEnabled()) { + log.info("Loaded CatchBatch Vrac > Species > " + target.getSpecies().getReferenceTaxonId() + " : " + target.getId()); + } + } + } + + // Hors-Vrac / Species + SortingBatch horsVracSpeciesBatch = catchBatchDao.getSortingBatch(catchBatchChilds, + "pmfmId", enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, + "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + if (horsVracSpeciesBatch != null) { + for (Batch batch : horsVracSpeciesBatch.getChildBatchs()) { + + SpeciesBatch target = new SpeciesBatch(); + batchHelper.entityToSpeciesBatch((SortingBatch) batch, target); + result.addChildren(target); + if (log.isInfoEnabled()) { + log.info("Loaded CatchBatch Hors Vrac > Species > " + target.getSpecies().getReferenceTaxonId() + " : " + target.getId()); + } + } + } + + return result; + } + + @Override + public SpeciesBatch createSpeciesBatch(SpeciesBatch bean, + String parentBatchId) { + Preconditions.checkNotNull(bean); + Preconditions.checkArgument(bean.getId() == null); + Preconditions.checkNotNull(bean.getSpecies()); + Preconditions.checkNotNull(bean.getSpecies().getId()); + Preconditions.checkNotNull(bean.getFishingOperation()); + Preconditions.checkNotNull(bean.getFishingOperation().getId()); + + getCurrentSession().setFlushMode(FlushMode.COMMIT); + + // Load full batch tree + Integer catchBatchId = catchBatchDao.getIdByFishingOperationId(bean.getFishingOperation().getIdAsInt()); + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); + + SortingBatch batch = SortingBatch.Factory.newInstance(); + speciesBatchToEntity(bean, batch, parentBatchId, catchBatch); + batch = catchBatchDao.createSortingBatch(batch, catchBatch); + + bean.setId(batch.getId()); + + getCurrentSession().flush(); + + return bean; + } + + @Override + public SpeciesBatch saveSpeciesBatch(SpeciesBatch bean) { + Preconditions.checkNotNull(bean); + Preconditions.checkNotNull(bean.getId()); + + // Load batch tree + Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(bean.getIdAsInt()); + Preconditions.checkNotNull(catchBatchId); + + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); + Preconditions.checkNotNull(catchBatch); + + getCurrentSession().setFlushMode(FlushMode.COMMIT); + + SortingBatch batch = catchBatchDao.getSortingBatchById(catchBatch, bean.getIdAsInt()); + String parentBatchId = null; + if (bean.getParentBatch() != null) { + parentBatchId = bean.getParentBatch().getId(); + } + speciesBatchToEntity(bean, batch, parentBatchId, catchBatch); + catchBatchDao.updateSortingBatch(batch, catchBatch); + getCurrentSession().flush(); + + return bean; + } + + @Override + public void deleteSpeciesBatch(String id) { + Preconditions.checkNotNull(id); + + getCurrentSession().setFlushMode(FlushMode.COMMIT); + + catchBatchDao.removeWithChildren(Integer.valueOf(id)); + + getCurrentSession().flush(); + } + + @Override + public void deleteSpeciesSubBatch(String id) { + Preconditions.checkNotNull(id); + deleteSpeciesBatch(id); + } + + @Override + public void changeSpeciesBatchSpecies(String batchId, Species species) { + + Preconditions.checkNotNull(batchId); + Preconditions.checkNotNull(species); + Preconditions.checkNotNull(species.getReferenceTaxonId()); + + catchBatchDao.setSortingBatchReferenceTaxon(batchId, species.getReferenceTaxonId()); + } + + //------------------------------------------------------------------------// + //-- SpeciesBatchFrequency methods --// + //------------------------------------------------------------------------// + + @Override + public List<SpeciesBatchFrequency> getAllSpeciesBatchFrequency( + String speciesBatchId) { + Preconditions.checkNotNull(speciesBatchId); + + List<SpeciesBatchFrequency> results = Lists.newArrayList(); + + Integer sortingBatchId = Integer.valueOf(speciesBatchId); + Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(sortingBatchId); + Preconditions.checkNotNull( + catchBatchId, + "Could not find catchBatch for speciesBatch: " + speciesBatchId); + + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = + catchBatchDao.loadFullTree(catchBatchId); + + SortingBatch sortingBatch = catchBatchDao.getSortingBatchById( + catchBatch, sortingBatchId); + + List<SortingBatch> frequencyChilds = batchHelper.getFrequencyChilds(sortingBatch); + for (SortingBatch child : frequencyChilds) { + SpeciesBatchFrequency target = new SpeciesBatchFrequency(); + + batchHelper.entityToSpeciesBatchFrequency(child, target); + results.add(target); + } + return Collections.unmodifiableList(results); + } + + @Override + public List<SpeciesBatchFrequency> saveSpeciesBatchFrequency( + String speciesBatchId, + List<SpeciesBatchFrequency> frequencies) { + Preconditions.checkNotNull(speciesBatchId); + Preconditions.checkNotNull(frequencies); + + List<SpeciesBatchFrequency> notNullFrequencies = Lists.newArrayList(); + + // Check that all frequencies have the same length PMFM (before doing any db call) + // and remove null frequencies + String pmfmId = null; + for (SpeciesBatchFrequency source : frequencies) { + + if (source.getLengthStepCaracteristic() != null) { + if (pmfmId == null) { + pmfmId = source.getLengthStepCaracteristic().getId(); + } else if (!pmfmId.equals(source.getLengthStepCaracteristic().getId())) { + throw new DataIntegrityViolationException("Batch frequencies under one SpeciesBatch must have all the same lengthStepCaracteristic"); + } + notNullFrequencies.add(source); + } + } + + getCurrentSession().setFlushMode(FlushMode.COMMIT); + + Integer sortingBatchId = Integer.valueOf(speciesBatchId); + Integer catchBatchId = catchBatchDao.getIdBySortingBatchId(sortingBatchId); + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch = catchBatchDao.loadFullTree(catchBatchId); + + if (catchBatch == null) { + return notNullFrequencies; + } + + // Retrieve parent + SortingBatch parentBatch = catchBatchDao.getSortingBatchById(catchBatch, sortingBatchId); + + // Remember child ids, to remove unchanged item (see at bottom in this method) + List<Integer> notUpdatedChildIds = Lists.newArrayList(); + List<SortingBatch> frequencyChilds = batchHelper.getFrequencyChilds(parentBatch); + for (SortingBatch child : frequencyChilds) { + notUpdatedChildIds.add(child.getId()); + } +// for (Batch batch : parentBatch.getChildBatchs()) { +// SortingBatch sortingBatch = (SortingBatch) batch; +// notUpdatedChildIds.add(sortingBatch.getId()); +// } + + short rankOrder = 0; + List<SortingBatch> batchsToUpdate = Lists.newArrayList(); + for (SpeciesBatchFrequency source : notNullFrequencies) { + rankOrder++; + + SortingBatch target; + if (source.getId() == null) { + + // Not existing batch + target = SortingBatch.Factory.newInstance(); + + // Fill the sorting batch from the source + batchHelper.speciesBatchFrequencyToEntity(source, target, parentBatch, rankOrder); + + // Create the targeted batch, then update the source id + catchBatchDao.createSortingBatch(target, catchBatch); + + // push back id of created sortingBatch + source.setId(target.getId()); + + if (log.isInfoEnabled()) { + log.info("Create frequency sortingBatch(" + rankOrder + "): " + target.getId()); + } + } else { + + // Existing batch + target = catchBatchDao.loadSortingBatch(source.getIdAsInt(), catchBatch); + + // Fill the sorting batch from the source + batchHelper.speciesBatchFrequencyToEntity(source, target, parentBatch, rankOrder); + + // Add the batch into a list (will be update later, using this list) + batchsToUpdate.add(target); + + // Remove id from id to remove + notUpdatedChildIds.remove(target.getId()); + + if (log.isInfoEnabled()) { + log.info("Update frequency sortingBatch(" + rankOrder + "): " + target.getId()); + } + } + } + + if (batchsToUpdate.size() > 0) { + + // update some batchs + catchBatchDao.updateSortingBatch(batchsToUpdate, catchBatch); + } + + if (notUpdatedChildIds.size() > 0) { + + // Remove obsolete frequencies + for (Integer batchId : notUpdatedChildIds) { + + if (log.isInfoEnabled()) { + log.info("Remove obsolete frequency sortingBatch: " + batchId); + } + catchBatchDao.removeWithChildren(batchId, catchBatch); + } + } + + getCurrentSession().flush(); + + return Collections.unmodifiableList(notNullFrequencies); + } + + //------------------------------------------------------------------------// + //-- Internal methods --// + //------------------------------------------------------------------------// + + protected void speciesBatchToEntity(SpeciesBatch source, + SortingBatch target, + String parentBatchId, + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch) { + batchHelper.speciesBatchToEntity(source, target, parentBatchId, catchBatch, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + } + +} Property changes on: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceImpl.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiPersistenceServiceLocator.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiPersistenceServiceLocator.java 2013-03-27 21:44:37 UTC (rev 692) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiPersistenceServiceLocator.java 2013-03-27 21:49:05 UTC (rev 693) @@ -80,11 +80,21 @@ FishingOperationPersistenceService.class); } - public static BatchPersistenceService getBatchPersistenceService() { + public static CatchBatchPersistenceService getCatchBatchPersistenceService() { return getPersistenceService("batchPersistenceService", - BatchPersistenceService.class); + CatchBatchPersistenceService.class); } + public static SpeciesBatchPersistenceService getSpeciesBatchPersistenceService() { + return getPersistenceService("speciesBatchPersistenceService", + SpeciesBatchPersistenceService.class); + } + + public static BenthosBatchPersistenceService getBenthosBatchPersistenceService() { + return getPersistenceService("benthosBatchPersistenceService", + BenthosBatchPersistenceService.class); + } + public static PlanktonBatchPersistenceService getPlanktonBatchPersistenceService() { return getPersistenceService("planktonBatchPersistenceService", PlanktonBatchPersistenceService.class); Added: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/BatchPersistenceHelper.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/BatchPersistenceHelper.java (rev 0) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/BatchPersistenceHelper.java 2013-03-27 21:49:05 UTC (rev 693) @@ -0,0 +1,603 @@ +package fr.ifremer.tutti.persistence.service.batch; + +/* + * #%L + * Tutti :: Persistence + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import com.google.common.base.Preconditions; +import com.google.common.collect.Lists; +import com.google.common.collect.Sets; +import fr.ifremer.adagio.core.dao.data.batch.Batch; +import fr.ifremer.adagio.core.dao.data.batch.CatchBatchExtendDao; +import fr.ifremer.adagio.core.dao.data.batch.SortingBatch; +import fr.ifremer.adagio.core.dao.data.measure.Measurement; +import fr.ifremer.adagio.core.dao.data.measure.QuantificationMeasurement; +import fr.ifremer.adagio.core.dao.data.measure.SortingMeasurement; +import fr.ifremer.adagio.core.dao.referential.QualityFlagImpl; +import fr.ifremer.adagio.core.dao.referential.pmfm.Pmfm; +import fr.ifremer.adagio.core.dao.referential.pmfm.QualitativeValue; +import fr.ifremer.adagio.core.dao.referential.pmfm.QualitativeValueImpl; +import fr.ifremer.adagio.core.dao.referential.taxon.ReferenceTaxon; +import fr.ifremer.adagio.core.dao.referential.taxon.ReferenceTaxonImpl; +import fr.ifremer.tutti.persistence.entities.data.SampleCategoryEnum; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicType; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.persistence.service.AbstractPersistenceService; +import fr.ifremer.tutti.persistence.service.ReferentialPersistenceService; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.springframework.dao.DataIntegrityViolationException; +import org.springframework.stereotype.Component; + +import javax.annotation.Resource; +import java.io.Serializable; +import java.text.MessageFormat; +import java.util.Collection; +import java.util.List; +import java.util.Set; + +/** + * Helper around batches. + * + * @author tchemit <chemit(a)codelutin.com> + * @since 1.2 + */ +@Component("batchPersistenceHelper") +public class BatchPersistenceHelper extends AbstractPersistenceService { + + /** Logger. */ + private static final Log log = + LogFactory.getLog(BatchPersistenceHelper.class); + + @Resource(name = "referentialPersistenceService") + protected ReferentialPersistenceService referentialService; + + @Resource(name = "catchBatchDao") + protected CatchBatchExtendDao catchBatchDao; + + public List<SortingBatch> getFrequencyChilds(SortingBatch sortingBatch) { + List<SortingBatch> result = Lists.newArrayList(); + + for (Batch batch : sortingBatch.getChildBatchs()) { + SortingBatch child = (SortingBatch) batch; + if (isFrequencyBatch(child)) { + result.add(child); + } + } + return result; + } + + public List<SortingBatch> getNotFrequencyChilds(SortingBatch sortingBatch) { + List<SortingBatch> result = Lists.newArrayList(); + + for (Batch batch : sortingBatch.getChildBatchs()) { + SortingBatch child = (SortingBatch) batch; + if (isFrequencyBatch(child)) { + result.add(child); + } + } + return result; + } + + /** + * Check if the given {@code sortingBatch} is a frequency one. + * + * We test that: + * <ul> + * <li>batch has exactly one measurement</li> + * <li>the measurement pmfm is not a sample category</li> + * </ul> + * + * @param sortingBatch batch to check + * @return {@code true} if given batch is a frequency batch, + * {@code false} otherwise. + */ + protected boolean isFrequencyBatch(SortingBatch sortingBatch) { + boolean result = false; + if (sortingBatch.getSortingMeasurements().size() == 1) { + SortingMeasurement sm + = sortingBatch.getSortingMeasurements().iterator().next(); + Pmfm pmfm = sm.getPmfm(); + SampleCategoryEnum sampleCategoryByPmfmId = + enumeration.getSampleCategoryByPmfmId(pmfm.getId()); + result = sampleCategoryByPmfmId == null; + + } + return result; + } + + public SpeciesBatch entityToSpeciesBatch(SortingBatch source, + SpeciesBatch target) { + + target.setId(source.getId().toString()); + + // Individual count + target.setNumber(source.getIndividualCount()); + + // Convert database weight (and sampling ratio) into UI weight and sampleCategoryWeight + if (source.getWeight() != null && source.getWeightBeforeSampling() == null) { + target.setSampleCategoryWeight(source.getWeight()); + } else { + target.setWeight(source.getWeight()); + target.setSampleCategoryWeight(source.getWeightBeforeSampling()); + } + + // Comments + target.setComment(source.getComments()); + + // Sample category type (only one is applied) + SortingMeasurement sm = null; + if (source.getSortingMeasurements().size() == 1) { + sm = source.getSortingMeasurements().iterator().next(); + } else if (source.getReferenceTaxon() != null && source.getReferenceTaxon().getId() != null) { + sm = catchBatchDao.getInheritedSortingMeasurement(source, enumeration.PMFM_ID_SORTED_UNSORTED); + } + if (sm != null) { + SampleCategoryEnum sampleCategory = enumeration.getSampleCategoryByPmfmId(sm.getPmfm().getId()); + if (sampleCategory != null) { + Integer qualitativeId = null; + if (sm.getQualitativeValue() != null) { + qualitativeId = sm.getQualitativeValue().getId(); + } + setSampleCategoryQualitative(target, sm.getPmfm().getId(), sm.getNumericalValue(), sm.getAlphanumericalValue(), qualitativeId); + } + } + + // Species + Integer referenceTaxonId = source.getInheritedReferenceTaxonId(); + if (referenceTaxonId == null && source.getReferenceTaxon() != null) { + referenceTaxonId = source.getReferenceTaxon().getId(); + } + if (referenceTaxonId != null) { + // TODO : add cache on getSpeciesByReferenceTaxonId + Species species = referentialService.getSpeciesByReferenceTaxonId(referenceTaxonId); + target.setSpecies(species); + } + //FIXME-TC Check the test is still ok? + //FIXME-TC We should a stronger test +// if (target.getSampleCategoryType() != null && source.getChildBatchs().size() > 0) { + if (target.getSampleCategoryType() != null) { + List<SpeciesBatch> targetChilds = Lists.newArrayList(); + for (Batch batch : source.getChildBatchs()) { + SortingBatch sourceChild = (SortingBatch) batch; + SpeciesBatch targetChild = new SpeciesBatch(); + entityToSpeciesBatch(sourceChild, targetChild); + if (log.isInfoEnabled()) { + log.info("Loaded CatchBatch Hors Vrac > Benthos > " + target.getSpecies().getReferenceTaxonId() + " : " + target.getId()); + } + if (targetChild.getSampleCategoryValue() != null) { + targetChilds.add(targetChild); + targetChild.setParentBatch(target); + } + } + target.setChildBatchs(targetChilds); + } + + return target; + } + + public void entityToSpeciesBatchFrequency(SortingBatch source, + SpeciesBatchFrequency target) { + + target.setId(source.getId()); + + target.setNumber(source.getIndividualCount()); + target.setWeight(source.getWeight()); + target.setComment(source.getComments()); + + Preconditions.checkState(source.getSortingMeasurements().size() == 1, "SortingBatch [" + source.getId() + "] need exactly one sortingMeasurement (to store the length step category), but had " + source.getSortingMeasurements().size()); + SortingMeasurement sm = source.getSortingMeasurements().iterator().next(); + Preconditions.checkNotNull(sm.getPmfm(), "SortingMeasurement [" + sm.getId() + "] can not have a null pmfm"); + Preconditions.checkNotNull(sm.getPmfm().getId(), "SortingMeasurement [" + sm.getId() + "] can not have a pmfm with null id"); + + // Length step category + Caracteristic lengthStepCaracteristic = + referentialService.getCaracteristic(sm.getPmfm().getId()); + target.setLengthStepCaracteristic(lengthStepCaracteristic); + + // Length + target.setLengthStep(sm.getNumericalValue()); + } + + public void speciesBatchToEntity(SpeciesBatch source, + SortingBatch target, + String parentBatchId, + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch, + Integer batchPmfm) { + + Preconditions.checkNotNull(source.getFishingOperation()); + Preconditions.checkNotNull(source.getFishingOperation().getId()); + + // Retrieve recorder department + Integer recorderDepartmentId = getRecorderDepartmentId(); + + Collection<QuantificationMeasurement> quantificationMeasurements = target.getQuantificationMeasurements(); + Collection<SortingMeasurement> sortingMeasurements = target.getSortingMeasurements(); + + // Create lists to store all updates, then remove not updated items + + Set<QuantificationMeasurement> notChangedQuantificationMeasurements = Sets.newHashSet(); + if (quantificationMeasurements != null) { + notChangedQuantificationMeasurements.addAll(quantificationMeasurements); + } + Set<SortingMeasurement> notChangedSortingMeasurements = Sets.newHashSet(); + if (sortingMeasurements != null) { + notChangedSortingMeasurements.addAll(sortingMeasurements); + } + + // If parent and root need to be set + if (target.getId() == null + || target.getRootBatch() == null + || (target.getParentBatch() != null && !target.getParentBatch().getId().toString().equals(parentBatchId))) { + setBatchParents(source, target, parentBatchId, catchBatch, batchPmfm); + } + + // RankOrder (initialize once, at creation) + if (target.getRankOrder() == null) { + // Start rank order at 3, because of special batches 'Biota' and 'Inert' + short rankOrder = (short) 3; + if (source.getParentBatch() != null && source.getParentBatch().getChildBatchs() != null) { + rankOrder += (short) source.getParentBatch().getChildBatchs().size(); + } else if (target.getParentBatch() != null && target.getParentBatch().getChildBatchs() != null) { + rankOrder += (short) target.getParentBatch().getChildBatchs().size(); + } + target.setRankOrder(rankOrder); + } + + // Force subgroup count to '1', as Allegro + target.setSubgroupCount(1f); + + // Weight or SampleCategoryWeight + if (source.getWeight() == null && source.getSampleCategoryWeight() == null) { + // Nothing to do : will be removed later, using notChangedSortingMeasurements + } else if (source.getSampleCategoryWeight() != null && source.getWeight() == null) { + QuantificationMeasurement quantificationMeasurement = catchBatchDao.setQuantificationMeasurement(target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getSampleCategoryWeight(), true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } else if (source.getWeight() != null && source.getSampleCategoryWeight() == null) { + QuantificationMeasurement quantificationMeasurement = catchBatchDao.setQuantificationMeasurement(target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getWeight(), true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } + + // Sampling Ratio + if (source.getSampleCategoryWeight() == null || source.getWeight() == null) { + target.setSamplingRatio(null); + target.setSamplingRatioText(null); + } else { + String samplingRatioText = source.getWeight() + "/" + source.getSampleCategoryWeight(); + samplingRatioText = samplingRatioText.replaceAll(",", "."); + target.setSamplingRatioText(samplingRatioText); + target.setSamplingRatio(source.getWeight() / source.getSampleCategoryWeight()); + QuantificationMeasurement quantificationMeasurement = catchBatchDao.setQuantificationMeasurement(target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getWeight(), true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } + + // Sorting measurement + if ((source.getSampleCategoryType() == null || source.getSampleCategoryValue() == null)) { + // Nothing to do : will be removed later, using notChangedSortingMeasurements + } else { + Integer pmfmId = source.getSampleCategoryType().getFieldValue(); + // Do not store sorting measurement if pmfm = SORTED (already store in an ancestor batch) + if (!pmfmId.equals(enumeration.PMFM_ID_SORTED_UNSORTED)) { + SortingMeasurement sortingMeasurement = setSortingMeasurement(target, recorderDepartmentId, + source.getSampleCategoryType(), source.getSampleCategoryValue()); + notChangedSortingMeasurements.remove(sortingMeasurement); + } + } + + // Individual count + target.setIndividualCount(source.getNumber()); + + // Species + ReferenceTaxon referenceTaxon; + if (source.getSpecies() == null || parentBatchId != null) { + referenceTaxon = null; + } else { + referenceTaxon = load(ReferenceTaxonImpl.class, source.getSpecies().getReferenceTaxonId()); + } + target.setReferenceTaxon(referenceTaxon); + + // QualityFlag + String qualityFlag; + if (source.isSpeciesToConfirm()) { + qualityFlag = enumeration.QUALITY_FLAG_CODE_DOUBTFUL; + } else { + qualityFlag = enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED; + } + target.setQualityFlag(load(QualityFlagImpl.class, qualityFlag)); + + // Comments + target.setComments(source.getComment()); + + // Exhaustive inventory (always true under a species batch) + target.setExhaustiveInventory(true); + + // Removed not changed measurements (in sorting and quantification measurement lists) + if (quantificationMeasurements != null) { + quantificationMeasurements.removeAll(notChangedQuantificationMeasurements); + } + if (sortingMeasurements != null) { + sortingMeasurements.removeAll(notChangedSortingMeasurements); + } +// if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { +// for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { +// target.getQuantificationMeasurements().remove(qm); +// } +// } +// +// if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { +// for (SortingMeasurement sm : notChangedSortingMeasurements) { +// target.getSortingMeasurements().remove(sm); +// } +// } + } + + public void setBatchParents(SpeciesBatch source, + SortingBatch target, + String parentBatchIdStr, + fr.ifremer.adagio.core.dao.data.batch.CatchBatch catchBatch, + Integer batchPmfmId) { + + Preconditions.checkNotNull(target); + Preconditions.checkNotNull(source.getFishingOperation()); + Preconditions.checkNotNull(source.getFishingOperation().getId()); + + // Load existing parent and root + SortingBatch parentBatch; + if (parentBatchIdStr != null) { + parentBatch = catchBatchDao.getSortingBatchById(catchBatch, Integer.valueOf(parentBatchIdStr)); + } + + // Or retrieve parent batch, from pmfm id + else { + // Retrieve category type + Integer pmfmId = source.getSampleCategoryType().getFieldValue(); + if (pmfmId == null || !pmfmId.equals(enumeration.PMFM_ID_SORTED_UNSORTED)) { + throw new DataIntegrityViolationException(MessageFormat.format( + "A species batch with no parent should have a sampleCategoryType {0} (PMFM.ID={1})", + SampleCategoryEnum.sortedUnsorted.name(), + enumeration.PMFM_ID_SORTED_UNSORTED)); + } + Integer qualitativeValueId = convertSampleCategoryValueIntoQualitativeId(source.getSampleCategoryValue()); + + parentBatch = catchBatchDao.getSortingBatch(catchBatch.getChildBatchs(), + "pmfmId", pmfmId, qualitativeValueId, + "pmfmId", enumeration.PMFM_ID_SORTING_TYPE, batchPmfmId); + + // Parent Batch + target.setParentBatch(parentBatch); + } + + + if (parentBatch == null) { + throw new DataIntegrityViolationException( + "Could not retrieve parent batch, for a given speciesBatch : invalid batch tree structure. Please make sure CatchBatch has been saved before to create a SpeciesBatch."); + } + + // Parent Batch + target.setParentBatch(parentBatch); + target.setRootBatch(catchBatch); + } + + public Integer convertSampleCategoryValueIntoQualitativeId(Serializable value) { + if (value == null) + return null; + Integer qualitativeValueId = null; + if (value instanceof CaracteristicQualitativeValue) { + CaracteristicQualitativeValue cqValue = (CaracteristicQualitativeValue) value; + qualitativeValueId = cqValue.getIdAsInt(); + } else if (value instanceof String) { + qualitativeValueId = Integer.valueOf((String) value); + } + return qualitativeValueId; + } + + public void setSampleCategoryQualitative(SpeciesBatch target, + Integer pmfmId, + Float numericalvalue, + String alphanumericalValue, + Integer qualitativeValueId) { + // skip if null or corresponding to the SORTING_TYPE PMFM (Expèce, Benthos, Plancton, etc.) + if (pmfmId == null || pmfmId.equals(enumeration.PMFM_ID_SORTING_TYPE)) { + return; + } + + SampleCategoryEnum sampleCategory = enumeration.getSampleCategoryByPmfmId(pmfmId); + Preconditions.checkNotNull(sampleCategory, "Unable to find corresponding SampleCategoryEnum for PMFM.ID : " + pmfmId); + + target.setSampleCategoryType(sampleCategory); + if (numericalvalue != null) { + target.setSampleCategoryValue(numericalvalue); + return; + } + if (alphanumericalValue != null) { + target.setSampleCategoryValue(alphanumericalValue); + return; + } + + Caracteristic caracteristic = referentialService.getCaracteristic(pmfmId); + if (caracteristic == null || caracteristic.getCaracteristicType() != CaracteristicType.QUALITATIVE) { + return; + } + CaracteristicQualitativeValue value = null; + for (CaracteristicQualitativeValue qv : caracteristic.getQualitativeValue()) { + if (qualitativeValueId.equals(qv.getIdAsInt())) { + value = qv; + break; + } + } + target.setSampleCategoryValue(value); + } + + public void speciesBatchFrequencyToEntity(SpeciesBatchFrequency source, + SortingBatch target, + SortingBatch parentBatch, + short rankOrder) { + Preconditions.checkNotNull(source.getBatch()); + Preconditions.checkNotNull(source.getBatch().getId()); + + // Retrieve recorder department + Integer recorderDepartmentId = getRecorderDepartmentId(); + + Collection<QuantificationMeasurement> quantificationMeasurements = target.getQuantificationMeasurements(); + Collection<SortingMeasurement> sortingMeasurements = target.getSortingMeasurements(); + + // Create lists to store all updates, then remove not updated items + Set<QuantificationMeasurement> notChangedQuantificationMeasurements = Sets.newHashSet(); + if (quantificationMeasurements != null) { + notChangedQuantificationMeasurements.addAll(quantificationMeasurements); + } + Set<SortingMeasurement> notChangedSortingMeasurements = Sets.newHashSet(); + if (sortingMeasurements != null) { + notChangedSortingMeasurements.addAll(sortingMeasurements); + } + + // If parent and root need to be set + if (target.getId() == null + || target.getRootBatch() == null + || (target.getParentBatch() != null && !target.getParentBatch().getId().equals(parentBatch.getId()))) { + + target.setParentBatch(parentBatch); + target.setRootBatch(parentBatch.getRootBatch()); + } + + // RankOrder + target.setRankOrder(rankOrder); + + // Weight or SampleCategoryWeight + if (source.getWeight() == null) { + // Nothing to do : will be removed later, using notChangedSortingMeasurements + } else { + QuantificationMeasurement quantificationMeasurement = catchBatchDao.setQuantificationMeasurement( + target, + enumeration.PMFM_ID_WEIGHT_MEASURED, recorderDepartmentId, source.getWeight(), true); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } + + // Sorting measurement + if ((source.getLengthStepCaracteristic() == null || source.getLengthStep() == null)) { + // Nothing to do : will be removed later, using notChangedSortingMeasurements + } else { + Integer pmfmId = source.getLengthStepCaracteristic().getIdAsInt(); + SortingMeasurement sortingMeasurement = setSortingMeasurement(target, recorderDepartmentId, pmfmId, + source.getLengthStep()); + notChangedSortingMeasurements.remove(sortingMeasurement); + } + + // Individual count + target.setIndividualCount(source.getNumber()); + + // Species + target.setReferenceTaxon(null); + + // QualityFlag + target.setQualityFlag(parentBatch.getQualityFlag()); + + // Comments + target.setComments(source.getComment()); + + // Exhaustive inventory (always true under a species batch) + target.setExhaustiveInventory(true); + + // Removed not changed measurements (in sorting and quantification measurement lists) + if (quantificationMeasurements != null) { + quantificationMeasurements.removeAll(notChangedQuantificationMeasurements); + } + if (sortingMeasurements != null) { + sortingMeasurements.removeAll(notChangedSortingMeasurements); + } + +// if (target.getQuantificationMeasurements() != null && notChangedQuantificationMeasurements.size() > 0) { +// for (QuantificationMeasurement qm : notChangedQuantificationMeasurements) { +// target.getQuantificationMeasurements().remove(qm); +// } +// } +// if (target.getSortingMeasurements() != null && notChangedSortingMeasurements.size() > 0) { +// for (SortingMeasurement sm : notChangedSortingMeasurements) { +// target.getSortingMeasurements().remove(sm); +// } +// } + } + + public Integer getRecorderDepartmentId() { + // TODO BL : voir si on peut récupérer le departement (du 1er saisisseur ?) + return enumeration.DEPARTMENT_ID_UNKNOWN_RECORDER_DEPARTMENT; + } + + public void setMeasurement(Measurement measurement, + Caracteristic caracteristic, + Serializable value) { + if (caracteristic.getCaracteristicType() == CaracteristicType.TEXT) { + measurement.setAlphanumericalValue((String) value); + } else if (caracteristic.getCaracteristicType() == CaracteristicType.NUMBER) { + measurement.setNumericalValue((Float) value); + } else if (caracteristic.getCaracteristicType() == CaracteristicType.QUALITATIVE) { + Integer qvId; + if (value instanceof CaracteristicQualitativeValue) { + qvId = ((CaracteristicQualitativeValue) value).getIdAsInt(); + } else if (value instanceof Integer) { + qvId = (Integer) value; + } + // TODO BL : not used ? => to remove + else { + qvId = Integer.valueOf(value.toString()); + } + QualitativeValue qv = load(QualitativeValueImpl.class, qvId); + measurement.setQualitativeValue(qv); + } + } + + public SortingMeasurement setSortingMeasurement( + SortingBatch sortingBatch, Integer recorderDepartmentId, + SampleCategoryEnum sampleCategory, Serializable value) { + Preconditions.checkNotNull(sampleCategory); + Preconditions.checkNotNull(value); + + Integer pmfmId = sampleCategory.getFieldValue(); + + Caracteristic caracteristic = referentialService.getCaracteristic(pmfmId); + SortingMeasurement sortingMeasurement = catchBatchDao.getSortingMeasurement( + sortingBatch, pmfmId, recorderDepartmentId, true); + setMeasurement(sortingMeasurement, caracteristic, value); + return sortingMeasurement; + } + + public SortingMeasurement setSortingMeasurement( + SortingBatch sortingBatch, Integer recorderDepartmentId, + Integer pmfmId, Serializable value) { + Preconditions.checkNotNull(pmfmId); + Preconditions.checkNotNull(value); + + Caracteristic caracteristic = referentialService.getCaracteristic(pmfmId); + SortingMeasurement sortingMeasurement = catchBatchDao.getSortingMeasurement( + sortingBatch, pmfmId, recorderDepartmentId, true); + setMeasurement(sortingMeasurement, caracteristic, value); + return sortingMeasurement; + } +} Property changes on: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/BatchPersistenceHelper.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/ScientificCruiseCatchBatchValidator.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/ScientificCruiseCatchBatchValidator.java 2013-03-27 21:44:37 UTC (rev 692) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/ScientificCruiseCatchBatchValidator.java 2013-03-27 21:49:05 UTC (rev 693) @@ -33,7 +33,7 @@ import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidationError; import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidator; import fr.ifremer.adagio.core.dao.data.measure.SortingMeasurement; -import fr.ifremer.tutti.persistence.service.BatchPersistenceService; +import fr.ifremer.tutti.persistence.service.CatchBatchPersistenceService; import fr.ifremer.tutti.persistence.service.TuttiEnumerationFile; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; @@ -54,7 +54,7 @@ LogFactory.getLog(ScientificCruiseCatchBatchValidator.class); @Autowired - protected BatchPersistenceService batchService; + protected CatchBatchPersistenceService batchService; @Autowired protected CatchBatchExtendDao catchBatchDao; Deleted: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceReadTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceReadTest.java 2013-03-27 21:44:37 UTC (rev 692) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceReadTest.java 2013-03-27 21:49:05 UTC (rev 693) @@ -1,201 +0,0 @@ -package fr.ifremer.tutti.persistence.service; - -/* - * #%L - * Tutti :: Persistence API - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import com.google.common.collect.Maps; -import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidationException; -import fr.ifremer.tutti.persistence.DatabaseResource; -import fr.ifremer.tutti.persistence.entities.data.BatchContainer; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.SampleCategoryEnum; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; -import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; -import org.junit.Before; -import org.junit.ClassRule; -import org.junit.Ignore; -import org.junit.Test; - -import java.util.List; -import java.util.Map; - -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertFalse; -import static org.junit.Assert.assertNotNull; -import static org.junit.Assert.assertTrue; - -/** - * To test {@link BatchPersistenceService} for read operation. - * - * @author tchemit <chemit(a)codelutin.com> - * @since 1.0 - */ -public class BatchPersistenceServiceReadTest { - - @ClassRule - public static final DatabaseResource dbResource = DatabaseResource.writeDb(); - - protected BatchPersistenceService service; - - protected FishingOperationPersistenceService fishingOperationService; - - protected FishingOperation fishingOperation; - - @Before - public void setUp() throws Exception { - service = TuttiPersistenceServiceLocator.getBatchPersistenceService(); - fishingOperationService = TuttiPersistenceServiceLocator.getFishingOperationPersistenceService(); - - List<FishingOperation> fishingOperations = fishingOperationService.getAllFishingOperation(dbResource.getFixtures().cruiseId()); - assertNotNull(fishingOperations); - assertTrue(fishingOperations.size() > 0); - fishingOperation = fishingOperations.get(0); - assertNotNull(fishingOperation); - assertNotNull(fishingOperation.getId()); - } - - @Test(expected = CatchBatchValidationException.class) - public void getCatchBatchFromFishingOperation() throws Exception { - - //TODO-TC Change test when data will be Tutti-aware - // old CGFS tree structure is still not valid - service.getCatchBatchFromFishingOperation(fishingOperation.getId()); - } - - @Ignore - @Test - public void getRootSpeciesBatch(/*String fishingOperationId*/) { - //TODO Do me! - service.getRootSpeciesBatch(fishingOperation.getId()); - } - - @Ignore - @Test - public void getAllSpeciesBatchFrequency(/*String speciesBatchId*/) { - //TODO Do me! - } - - @Ignore - @Test - public void getRootBenthosBatch(/*String fishingOperationId*/) { - //TODO Do me! - } - - - public static void assertSpeciesBatch(SpeciesBatch expectedBatch, - SpeciesBatch actualBatch, - boolean assertIdEquals) { - assertNotNull(actualBatch); - assertNotNull(actualBatch.getId()); - if (assertIdEquals && expectedBatch.getId() != null) { - assertEquals(expectedBatch.getId(), actualBatch.getId()); - } - assertEquals(expectedBatch.getWeight(), actualBatch.getWeight()); - assertEquals(expectedBatch.getSampleCategoryType(), actualBatch.getSampleCategoryType()); - if (expectedBatch.getSampleCategoryValue() != null && expectedBatch.getSampleCategoryValue() instanceof CaracteristicQualitativeValue) { - assertNotNull("Bad sampleCategoryValue : expected <" + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId() + "> but was <null>", - actualBatch.getSampleCategoryValue()); - assertEquals( - ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId(), - ((CaracteristicQualitativeValue) actualBatch.getSampleCategoryValue()).getId()); - } else { - assertEquals(expectedBatch.getSampleCategoryValue(), actualBatch.getSampleCategoryValue()); - } - assertEquals(expectedBatch.getSampleCategoryWeight(), actualBatch.getSampleCategoryWeight()); - assertEquals(expectedBatch.getNumber(), actualBatch.getNumber()); - assertEquals(expectedBatch.getComment(), actualBatch.getComment()); - - // Check species only if Vrac/HorsVrac or if batch has been load throw getAllxxx method - // (Because getSpeciesBatch(id) could not always retrieve the species) - if (expectedBatch.getSpecies() != null && ( - expectedBatch.getSampleCategoryType() == SampleCategoryEnum.sortedUnsorted - || actualBatch.getSpecies() != null)) { - assertNotNull(actualBatch.getSpecies()); - assertEquals(expectedBatch.getSpecies().getId(), actualBatch.getSpecies().getId()); - } - } - - public static void assertBatchFrequencies(List<SpeciesBatchFrequency> expectedFrequencies, - List<SpeciesBatchFrequency> actualFrequencies, - boolean assertIdEquals) { - assertNotNull(actualFrequencies); - assertEquals(expectedFrequencies.size(), actualFrequencies.size()); - - // Store actual batches into a map, using the length as key - Map<Float, SpeciesBatchFrequency> expectedLengthMap = Maps.newHashMap(); - for (SpeciesBatchFrequency speciesBatchFrequency : expectedFrequencies) { - expectedLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); - } - - // Store expected batches into a map, using the length as key - Map<Float, SpeciesBatchFrequency> actualLengthMap = Maps.newHashMap(); - for (SpeciesBatchFrequency speciesBatchFrequency : actualFrequencies) { - assertFalse("Duplicate lengthStep found in batchFrequencies, for length=" + speciesBatchFrequency.getLengthStep(), actualLengthMap.containsKey(speciesBatchFrequency.getLengthStep())); - actualLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); - assertNotNull(speciesBatchFrequency.getId()); - } - - for (Float lengthStep : expectedLengthMap.keySet()) { - SpeciesBatchFrequency expectedBatchFrequency = expectedLengthMap.get(lengthStep); - SpeciesBatchFrequency actualBatchFrequency = actualLengthMap.get(lengthStep); - if (assertIdEquals) { - assertEquals(expectedBatchFrequency.getId(), actualBatchFrequency.getId()); - } - assertNotNull(expectedBatchFrequency.getLengthStepCaracteristic()); - assertEquals(expectedBatchFrequency.getLengthStepCaracteristic().getId(), actualBatchFrequency.getLengthStepCaracteristic().getId()); - assertEquals(expectedBatchFrequency.getNumber(), actualBatchFrequency.getNumber()); - assertEquals(expectedBatchFrequency.getWeight(), actualBatchFrequency.getWeight()); - assertEquals(expectedBatchFrequency.getComment(), actualBatchFrequency.getComment()); - //assertNotNull(expectedBatchFrequency.getBatch()); - //assertEquals(expectedBatchFrequency.getBatch().getId(), actualBatchFrequency.getBatch().getId()); - } - } - - public static SpeciesBatch getSpeciesBatch(String fishingOperationId, - String speciesBatchId) { - BatchContainer<SpeciesBatch> rootSpeciesBatch = TuttiPersistenceServiceLocator.getBatchPersistenceService().getRootSpeciesBatch(fishingOperationId); - return getSpeciesBatch(speciesBatchId, rootSpeciesBatch.getChildren()); - } - - public static SpeciesBatch getSpeciesBatch(String speciesBatchId, - List<SpeciesBatch> speciesBatchs) { - if (speciesBatchs == null) { - return null; - } - for (SpeciesBatch speciesBatch : speciesBatchs) { - if (speciesBatchId.equals(speciesBatch.getId())) { - return speciesBatch; - } - if (speciesBatch.getChildBatchs() != null) { - speciesBatch = getSpeciesBatch(speciesBatchId, speciesBatch.getChildBatchs()); - if (speciesBatch != null) { - return speciesBatch; - } - } - } - return null; - } - -} Deleted: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceWriteTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceWriteTest.java 2013-03-27 21:44:37 UTC (rev 692) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceWriteTest.java 2013-03-27 21:49:05 UTC (rev 693) @@ -1,884 +0,0 @@ -package fr.ifremer.tutti.persistence.service; - -/* - * #%L - * Tutti :: Persistence API - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import com.google.common.collect.Lists; -import com.google.common.collect.Maps; -import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidationException; -import fr.ifremer.tutti.persistence.DatabaseResource; -import fr.ifremer.tutti.persistence.entities.data.BatchContainer; -import fr.ifremer.tutti.persistence.entities.data.CatchBatch; -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.SampleCategoryEnum; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; -import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; -import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; -import fr.ifremer.tutti.persistence.entities.referential.CaracteristicType; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import fr.ifremer.tutti.persistence.entities.referential.TuttiLocation; -import org.junit.Assert; -import org.junit.Before; -import org.junit.ClassRule; -import org.junit.Ignore; -import org.junit.Test; -import org.springframework.dao.DataRetrievalFailureException; - -import java.util.Calendar; -import java.util.Date; -import java.util.GregorianCalendar; -import java.util.List; -import java.util.Map; - -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertFalse; -import static org.junit.Assert.assertNotNull; -import static org.junit.Assert.assertNull; -import static org.junit.Assert.assertTrue; - -/** - * To test {@link BatchPersistenceService} for write operation. - * - * @author tchemit <chemit(a)codelutin.com> - * @since 1.0 - */ -public class BatchPersistenceServiceWriteTest { - - @ClassRule - public static final DatabaseResource dbResource = DatabaseResource.writeDb(); - - protected BatchPersistenceService service; - - protected CruisePersistenceService cruiseService; - - protected FishingOperationPersistenceService fishingOperationService; - - protected ReferentialPersistenceService referentialService; - - /* - * Entities prepared in setUp() : - * */ - protected Cruise cruise; - - protected FishingOperation fishingOperationNoCatchBatch; - - protected FishingOperation fishingOperationWithEmptyBatch; - - protected CatchBatch catchBacth; - - protected List<Species> species; - - protected Caracteristic sortedUnsortedPMFM; - - protected CaracteristicQualitativeValue horsVracQualitativeValue; - - protected CaracteristicQualitativeValue vracQualitativeValue; - - protected Caracteristic maturityPMFM; - - protected CaracteristicQualitativeValue firstMaturityQualitativeValue; - - protected Caracteristic sexPMFM; - - protected CaracteristicQualitativeValue maleQualitativeValue; - - protected CaracteristicQualitativeValue femaleQualitativeValue; - - protected CaracteristicQualitativeValue unkQualitativeValue; - - protected Caracteristic frequencyPMFM; - - @Before - public void setUp() throws Exception { - service = TuttiPersistenceServiceLocator.getBatchPersistenceService(); - cruiseService = TuttiPersistenceServiceLocator.getCruisePersistenceService(); - fishingOperationService = TuttiPersistenceServiceLocator.getFishingOperationPersistenceService(); - referentialService = TuttiPersistenceServiceLocator.getReferentialPersistenceService(); - - species = referentialService.getAllSpecies(); - assertNotNull(species); - assertTrue(species.size() > 2); - - cruise = cruiseService.getCruise(dbResource.getFixtures().cruiseId()); - cruise.setId(null); - Calendar calendar = new GregorianCalendar(); - cruise.setBeginDate(calendar.getTime()); - calendar.add(Calendar.MONTH, 1); // add one month - cruise.setEndDate(calendar.getTime()); - List<TuttiLocation> allHarbour = referentialService.getAllHarbour(); - Assert.assertNotNull(allHarbour); - Assert.assertTrue(allHarbour.size() > 1); - cruise.setDepartureLocation(allHarbour.get(0)); - cruise.setReturnLocation(allHarbour.get(1)); - - cruise = cruiseService.createCruise(cruise); - - // Create a first operation, with no cacth batch : to test CatchBatch insert/update : - List<FishingOperation> fishingOperations = fishingOperationService.getAllFishingOperation(dbResource.getFixtures().cruiseId()); - assertNotNull(fishingOperations); - assertTrue(fishingOperations.size() > 0); - fishingOperationNoCatchBatch = fishingOperations.get(0); - fishingOperationNoCatchBatch = fishingOperationService.getFishingOperation(fishingOperationNoCatchBatch.getId()); - fishingOperationNoCatchBatch.setId(null); - fishingOperationNoCatchBatch.setCruise(cruise); - calendar.setTime(new Date()); - calendar.set(Calendar.HOUR_OF_DAY, 1); - calendar.set(Calendar.MILLISECOND, 0); - fishingOperationNoCatchBatch.setGearShootingStartDate(calendar.getTime()); - calendar.setTime(new Date()); - calendar.set(Calendar.HOUR_OF_DAY, 10); - calendar.set(Calendar.MILLISECOND, 0); - fishingOperationNoCatchBatch.setGearShootingEndDate(calendar.getTime()); - fishingOperationNoCatchBatch = fishingOperationService.createFishingOperation(fishingOperationNoCatchBatch); - - // Create a second operation, with no cacth batch : to test CatchBatch insert/update : - fishingOperationWithEmptyBatch = fishingOperations.get(1); - fishingOperationWithEmptyBatch = fishingOperationService.getFishingOperation(fishingOperationWithEmptyBatch.getId()); - fishingOperationWithEmptyBatch.setId(null); - fishingOperationWithEmptyBatch.setCruise(cruise); - calendar.setTime(new Date()); - calendar.set(Calendar.HOUR_OF_DAY, 11); - calendar.set(Calendar.MILLISECOND, 0); - fishingOperationWithEmptyBatch.setGearShootingStartDate(calendar.getTime()); - calendar.setTime(new Date()); - calendar.set(Calendar.HOUR_OF_DAY, 12); - calendar.set(Calendar.MILLISECOND, 0); - fishingOperationWithEmptyBatch.setGearShootingEndDate(calendar.getTime()); - fishingOperationWithEmptyBatch = fishingOperationService.createFishingOperation(fishingOperationWithEmptyBatch); - - catchBacth = new CatchBatch(); - catchBacth.setFishingOperation(fishingOperationWithEmptyBatch); - catchBacth = service.createCatchBatch(catchBacth); - - sortedUnsortedPMFM = referentialService.getSortedUnsortedCaracteristic(); - horsVracQualitativeValue = sortedUnsortedPMFM.getQualitativeValue(0); - vracQualitativeValue = sortedUnsortedPMFM.getQualitativeValue(1); - maturityPMFM = referentialService.getMaturityCaracteristic(); - firstMaturityQualitativeValue = maturityPMFM.getQualitativeValue(0); - sexPMFM = referentialService.getSexCaracteristic(); - maleQualitativeValue = sexPMFM.getQualitativeValue(1); - femaleQualitativeValue = sexPMFM.getQualitativeValue(2); - unkQualitativeValue = sexPMFM.getQualitativeValue(3); - - List<Caracteristic> cara = referentialService.getAllCaracteristic(); - for (Caracteristic caracteristic : cara) { - if (caracteristic.getCaracteristicType() == CaracteristicType.NUMBER - && caracteristic.getPrecision() != null - && caracteristic.getPrecision() == 0.5f) { - frequencyPMFM = caracteristic; - break; - } - } - assertNotNull("no numerical PMFM with a precision has been found. Could not define a PMFM for batch frequencies.", frequencyPMFM); - - } - - @Test - public void createAndSaveCatchBatch() throws Exception { - CatchBatch catchBatch; - - catchBatch = new CatchBatch(); - catchBatch.setFishingOperation(fishingOperationNoCatchBatch); - - // ----------------------------------------------------------------------------- - // 1. Test with only mandatory properties - // ----------------------------------------------------------------------------- - - // Create and reload (test round trip) - assertCreateAndReloadCatchBatch(catchBatch, fishingOperationNoCatchBatch.getId()); - - // ----------------------------------------------------------------------------- - // 2. Test with all properties - // ----------------------------------------------------------------------------- - catchBatch.setId(null); - // total weight : 100kg - catchBatch.setCatchTotalWeight(75f); - // Vrac : - { - // note : poids trie par la balance tremis (thalassa) (init par pupitri) - catchBatch.setCatchTotalSortedTremisWeight(50f); - // note : poids vrac caroussel (thalassa) (init par pupitri) (vrac trie) ou bien "poids trié fournie par la - // table de tri (Sum(Si) - catchBatch.setCatchTotalSortedCarousselWeight(45f); - - // Species - { - catchBatch.setSpeciesTotalSortedWeight(12f); - catchBatch.setSpeciesTotalSampleSortedWeight(8f); - catchBatch.setSpeciesTotalLivingNotItemizedWeight(0.2f); - catchBatch.setSpeciesTotalInertWeight(0.1f); - } - } - // Hors Vrac : 10kg - { - catchBatch.setCatchTotalUnsortedWeight(10f); - - // Species - { - catchBatch.setSpeciesTotalUnsortedWeight(10f); - } - } - // Rejet : 15kg - catchBatch.setCatchTotalRejectedWeight(15f); - - // Create and reload (test round trip) - assertCreateAndReloadCatchBatch(catchBatch, fishingOperationNoCatchBatch.getId()); - - // ----------------------------------------------------------------------------- - // 2. Test save after modification - // ----------------------------------------------------------------------------- - catchBatch.setCatchTotalSortedTremisWeight(null); - catchBatch.setCatchTotalSortedCarousselWeight(null); - catchBatch.setSpeciesTotalSortedWeight(null); - catchBatch.setSpeciesTotalSampleSortedWeight(null); - catchBatch.setCatchTotalUnsortedWeight(null); - catchBatch.setSpeciesTotalUnsortedWeight(null); - - assertSaveAndReloadCatchBatch(catchBatch, fishingOperationNoCatchBatch.getId()); - } - - @Test - public void createAndSaveSpeciesBatchAndFrequencies() { - SpeciesBatch esp1Batch; - SpeciesBatch esp2Batch; - SpeciesBatch frequenciesParentBatch; - SpeciesBatch batch; - Species taxon1 = species.get(0); - Species taxon2 = species.get(1); - - // ----------------------------------------------------------------------------- - // 1. Test with only mandatory properties - // ----------------------------------------------------------------------------- - // batch : "ESP1 - Vrac/5" - batch = new SpeciesBatch(); - batch.setParentBatch(null); - batch.setFishingOperation(fishingOperationNoCatchBatch); - batch.setSpecies(taxon1); - batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); - batch.setSampleCategoryValue(vracQualitativeValue); - batch.setSampleCategoryWeight(5f); - - assertCreateAndReloadSpeciesBatch(batch, null); - - // Save ESP1 batch - esp1Batch = batch; - - // ----------------------------------------------------------------------------- - // 2. Test child "Male/2" - // ----------------------------------------------------------------------------- - // Batch : ESP1 - Vrac/5 Male/2 ss-ech/1 Nombre/7 - batch = new SpeciesBatch(); - batch.setId(null); - batch.setParentBatch(esp1Batch); - batch.setSpecies(taxon1); - batch.setComment("ESP1 - Vrac/5 Male/2 ss-ech/1 Nombre/7"); - batch.setSampleCategoryType(SampleCategoryEnum.sex); - batch.setSampleCategoryValue(maleQualitativeValue); - batch.setSampleCategoryWeight(2f); - batch.setWeight(1f); - batch.setNumber(7); - - assertCreateAndReloadSpeciesBatch(batch, batch.getParentBatch().getId()); - - // ----------------------------------------------------------------------------- - // 3. Test child "Female/2" - // ----------------------------------------------------------------------------- - // Batch : ESP1 - Vrac/5 Female/3 Nombre/14 - batch = new SpeciesBatch(); - batch.setId(null); - batch.setParentBatch(esp1Batch); - batch.setSpecies(taxon1); - batch.setComment("ESP1 - Vrac/5 Female/3 Nombre/14"); - batch.setSampleCategoryType(SampleCategoryEnum.sex); - batch.setSampleCategoryValue(femaleQualitativeValue); - batch.setSampleCategoryWeight(3f); - batch.setWeight(null); - batch.setNumber(14); - - assertCreateAndReloadSpeciesBatch(batch, batch.getParentBatch().getId()); - - // ----------------------------------------------------------------------------- - // 4. Test : ESP2 - Vrac/7 - // \- ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11 - // ----------------------------------------------------------------------------- - // batch : "ESP2 - Vrac/7 " - batch = new SpeciesBatch(); - batch.setParentBatch(null); - batch.setSpecies(taxon2); - batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); - batch.setSampleCategoryValue(vracQualitativeValue); - batch.setSampleCategoryWeight(7f); - - assertCreateAndReloadSpeciesBatch(batch, null); - esp2Batch = batch; - - // Batch : ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11 - batch = new SpeciesBatch(); - batch.setId(null); - batch.setParentBatch(esp2Batch); - batch.setSpecies(taxon2); - batch.setComment("ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11"); - batch.setSampleCategoryType(SampleCategoryEnum.maturity); - batch.setSampleCategoryValue(firstMaturityQualitativeValue); - batch.setSampleCategoryWeight(2f); - batch.setWeight(1f); - batch.setNumber(11); - - assertCreateAndReloadSpeciesBatch(batch, batch.getParentBatch().getId()); - - // ----------------------------------------------------------------------------- - // 5. Test save after modifications - // ----------------------------------------------------------------------------- - // Batch : ESP2 - Vrac/7 UNK/1.75 ss-ech/1.11 Nombre/99 - batch.setComment("ESP2 - Vrac/7 UNK/1.75 ss-ech/1.11 Nombre/99"); - batch.setSampleCategoryType(SampleCategoryEnum.sex); - batch.setSampleCategoryValue(unkQualitativeValue); - batch.setSampleCategoryWeight(1.75f); - batch.setWeight(1.11f); - batch.setFishingOperation(fishingOperationWithEmptyBatch); - batch.setNumber(99); - - // Save and reload, then check - SpeciesBatch savedBatch = service.saveSpeciesBatch(batch); - assertSpeciesBatch(savedBatch, batch, false); - SpeciesBatch reloadedBatch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), savedBatch.getId()); - assertSpeciesBatch(savedBatch, reloadedBatch, true); - - // Save batch for later - frequenciesParentBatch = batch; - - // ----------------------------------------------------------------------------- - // 6. Test change species - // ----------------------------------------------------------------------------- - esp2Batch.setSpecies(taxon1); - service.changeSpeciesBatchSpecies(esp2Batch.getId(), taxon1); - assertSpeciesBatch(savedBatch, batch, false); - reloadedBatch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), esp2Batch.getId()); - assertSpeciesBatch(esp2Batch, reloadedBatch, true); - - // ----------------------------------------------------------------------------- - // 7. Test get all root species - // ----------------------------------------------------------------------------- - BatchContainer<SpeciesBatch> rootSpeciesBatc = service.getRootSpeciesBatch(fishingOperationWithEmptyBatch.getId()); - List<SpeciesBatch> rootSpeciesBatch = rootSpeciesBatc.getChildren(); - assertNotNull(rootSpeciesBatch); - assertEquals(2, rootSpeciesBatch.size()); - assertNotNull(rootSpeciesBatch.get(0).getChildBatchs()); - assertTrue(rootSpeciesBatch.get(0).getChildBatchs().size() > 0); - assertNotNull(rootSpeciesBatch.get(1).getChildBatchs()); - assertTrue(rootSpeciesBatch.get(1).getChildBatchs().size() > 0); - - // ----------------------------------------------------------------------------- - // 8. Test batch frequency creation - // ----------------------------------------------------------------------------- - - List<SpeciesBatchFrequency> frequencies = Lists.newArrayList(); - float lengthStep = 0.5f; - for (float length = lengthStep; length < lengthStep * 20; length += lengthStep) { - SpeciesBatchFrequency frequency = new SpeciesBatchFrequency(); - frequency.setLengthStep(length); - frequency.setNumber((int) (length * 2)); - frequency.setWeight(0.01f * length * 2); - frequency.setLengthStepCaracteristic(frequencyPMFM); - frequency.setBatch(frequenciesParentBatch); - frequency.setComment("comments"); - frequencies.add(frequency); - } - List<SpeciesBatchFrequency> createdFrequencies = assertCreateAndReloadSpeciesBatchFrequency(frequencies, frequenciesParentBatch.getId()); - - // ----------------------------------------------------------------------------- - // 9. Test batch frequency update - // ----------------------------------------------------------------------------- - // Update some batchs (1cm, 2cm, etc) - for (SpeciesBatchFrequency speciesBatchFrequency : createdFrequencies) { - float length = speciesBatchFrequency.getLengthStep(); - if ((float) (int) length == length) { - speciesBatchFrequency.setNumber(12); - speciesBatchFrequency.setComment(null); - } - } - // And remove the last item (should be deleted in DB) - // Note: use a new list (everything list coming from service are not modifiable) - createdFrequencies = Lists.newArrayList(createdFrequencies); - createdFrequencies.remove(createdFrequencies.size() - 1); - - List<SpeciesBatchFrequency> savedFrequencies = service.saveSpeciesBatchFrequency(frequenciesParentBatch.getId(), createdFrequencies); - assertBatchFrequencies(createdFrequencies, savedFrequencies, true); - } - - @Test - public void deleteSpeciesBatch(/* String id */) { - SpeciesBatch esp1Batch; - SpeciesBatch batch; - Species taxon1 = species.get(0); - - // ----------------------------------------------------------------------------- - // 1. Create two batchs (parent + child), then remove the parent batch - // ----------------------------------------------------------------------------- - // batch : ESP1 Vrac/5 - batch = new SpeciesBatch(); - batch.setParentBatch(null); - batch.setFishingOperation(fishingOperationWithEmptyBatch); - batch.setSpecies(taxon1); - batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); - batch.setSampleCategoryValue(vracQualitativeValue); - batch.setSampleCategoryWeight(5f); - assertCreateAndReloadSpeciesBatch(batch, null); - esp1Batch = batch; - - // batch : ESP1 Vrac/5 Male/2 - batch = new SpeciesBatch(); - batch.setParentBatch(esp1Batch); - batch.setFishingOperation(fishingOperationWithEmptyBatch); - batch.setSpecies(taxon1); - batch.setSampleCategoryType(SampleCategoryEnum.sex); - batch.setSampleCategoryValue(maleQualitativeValue); - batch.setSampleCategoryWeight(2f); - assertCreateAndReloadSpeciesBatch(batch, esp1Batch.getId()); - - // Try to remove - service.deleteSpeciesBatch(esp1Batch.getId()); - - // Check if remove - try { - batch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), esp1Batch.getId()); - assertNull(batch); - } catch (DataRetrievalFailureException drfe) { - assertNotNull(drfe); - } - } - - - @Ignore - @Test - public void createAndSaveBenthosBatchAndFrequencies() { - SpeciesBatch esp1Batch; - SpeciesBatch esp2Batch; - SpeciesBatch frequenciesParentBatch; - SpeciesBatch batch; - Species taxon1 = species.get(0); - Species taxon2 = species.get(1); - - // ----------------------------------------------------------------------------- - // 1. Test with only mandatory properties - // ----------------------------------------------------------------------------- - // batch : "ESP1 - Vrac/5" - batch = new SpeciesBatch(); - batch.setParentBatch(null); - batch.setFishingOperation(fishingOperationNoCatchBatch); - batch.setSpecies(taxon1); - batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); - batch.setSampleCategoryValue(vracQualitativeValue); - batch.setSampleCategoryWeight(5f); - - assertCreateAndReloadBenthosBatch(batch, null); - - // Save ESP1 batch - esp1Batch = batch; - - // ----------------------------------------------------------------------------- - // 2. Test child "Male/2" - // ----------------------------------------------------------------------------- - // Batch : ESP1 - Vrac/5 Male/2 ss-ech/1 Nombre/7 - batch = new SpeciesBatch(); - batch.setId(null); - batch.setParentBatch(esp1Batch); - batch.setSpecies(taxon1); - batch.setComment("ESP1 - Vrac/5 Male/2 ss-ech/1 Nombre/7"); - batch.setSampleCategoryType(SampleCategoryEnum.sex); - batch.setSampleCategoryValue(maleQualitativeValue); - batch.setSampleCategoryWeight(2f); - batch.setWeight(1f); - batch.setNumber(7); - - assertCreateAndReloadBenthosBatch(batch, batch.getParentBatch().getId()); - - // ----------------------------------------------------------------------------- - // 3. Test child "Female/2" - // ----------------------------------------------------------------------------- - // Batch : ESP1 - Vrac/5 Female/3 Nombre/14 - batch = new SpeciesBatch(); - batch.setId(null); - batch.setParentBatch(esp1Batch); - batch.setSpecies(taxon1); - batch.setComment("ESP1 - Vrac/5 Female/3 Nombre/14"); - batch.setSampleCategoryType(SampleCategoryEnum.sex); - batch.setSampleCategoryValue(femaleQualitativeValue); - batch.setSampleCategoryWeight(3f); - batch.setWeight(null); - batch.setNumber(14); - - assertCreateAndReloadBenthosBatch(batch, batch.getParentBatch().getId()); - - // ----------------------------------------------------------------------------- - // 4. Test : ESP2 - Vrac/7 - // \- ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11 - // ----------------------------------------------------------------------------- - // batch : "ESP2 - Vrac/7 " - batch = new SpeciesBatch(); - batch.setParentBatch(null); - batch.setSpecies(taxon2); - batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); - batch.setSampleCategoryValue(vracQualitativeValue); - batch.setSampleCategoryWeight(7f); - - assertCreateAndReloadBenthosBatch(batch, null); - esp2Batch = batch; - - // Batch : ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11 - batch = new SpeciesBatch(); - batch.setId(null); - batch.setParentBatch(esp2Batch); - batch.setSpecies(taxon2); - batch.setComment("ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11"); - batch.setSampleCategoryType(SampleCategoryEnum.maturity); - batch.setSampleCategoryValue(firstMaturityQualitativeValue); - batch.setSampleCategoryWeight(2f); - batch.setWeight(1f); - batch.setNumber(11); - - assertCreateAndReloadBenthosBatch(batch, batch.getParentBatch().getId()); - - // ----------------------------------------------------------------------------- - // 5. Test save after modifications - // ----------------------------------------------------------------------------- - // Batch : ESP2 - Vrac/7 UNK/1.75 ss-ech/1.11 Nombre/99 - batch.setComment("ESP2 - Vrac/7 UNK/1.75 ss-ech/1.11 Nombre/99"); - batch.setSampleCategoryType(SampleCategoryEnum.sex); - batch.setSampleCategoryValue(unkQualitativeValue); - batch.setSampleCategoryWeight(1.75f); - batch.setWeight(1.11f); - batch.setFishingOperation(fishingOperationWithEmptyBatch); - batch.setNumber(99); - - // Save and reload, then check - SpeciesBatch savedBatch = service.saveBenthosBatch(batch); - assertSpeciesBatch(savedBatch, batch, false); - SpeciesBatch reloadedBatch = getBenthosBatch(fishingOperationWithEmptyBatch.getId(), savedBatch.getId()); - assertSpeciesBatch(savedBatch, reloadedBatch, true); - - // Save batch for later - frequenciesParentBatch = batch; - - // ----------------------------------------------------------------------------- - // 6. Test change species - // ----------------------------------------------------------------------------- - esp2Batch.setSpecies(taxon1); - service.changeSpeciesBatchSpecies(esp2Batch.getId(), taxon1); - assertSpeciesBatch(savedBatch, batch, false); - reloadedBatch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), esp2Batch.getId()); - assertSpeciesBatch(esp2Batch, reloadedBatch, true); - - // ----------------------------------------------------------------------------- - // 7. Test get all root species - // ----------------------------------------------------------------------------- - List<SpeciesBatch> rootSpeciesBatch = service.getRootSpeciesBatch(fishingOperationWithEmptyBatch.getId()).getChildren(); - assertNotNull(rootSpeciesBatch); - assertEquals(2, rootSpeciesBatch.size()); - assertNotNull(rootSpeciesBatch.get(0).getChildBatchs()); - assertTrue(rootSpeciesBatch.get(0).getChildBatchs().size() > 0); - assertNotNull(rootSpeciesBatch.get(1).getChildBatchs()); - assertTrue(rootSpeciesBatch.get(1).getChildBatchs().size() > 0); - - // ----------------------------------------------------------------------------- - // 8. Test batch frequency creation - // ----------------------------------------------------------------------------- - - List<SpeciesBatchFrequency> frequencies = Lists.newArrayList(); - float lengthStep = 0.5f; - for (float length = lengthStep; length < lengthStep * 20; length += lengthStep) { - SpeciesBatchFrequency frequency = new SpeciesBatchFrequency(); - frequency.setLengthStep(length); - frequency.setNumber((int) (length * 2)); - frequency.setWeight(0.01f * length * 2); - frequency.setLengthStepCaracteristic(frequencyPMFM); - frequency.setBatch(frequenciesParentBatch); - frequency.setComment("comments"); - frequencies.add(frequency); - } - List<SpeciesBatchFrequency> createdFrequencies = assertCreateAndReloadSpeciesBatchFrequency(frequencies, frequenciesParentBatch.getId()); - - // ----------------------------------------------------------------------------- - // 9. Test batch frequency update - // ----------------------------------------------------------------------------- - // Update some batchs (1cm, 2cm, etc) - for (SpeciesBatchFrequency speciesBatchFrequency : createdFrequencies) { - float length = speciesBatchFrequency.getLengthStep(); - if ((float) (int) length == length) { - speciesBatchFrequency.setNumber(12); - speciesBatchFrequency.setComment(null); - } - } - // And remove the last item (should be deleted in DB) - createdFrequencies.remove(createdFrequencies.size() - 1); - List<SpeciesBatchFrequency> savedFrequencies = service.saveSpeciesBatchFrequency(frequenciesParentBatch.getId(), frequencies); - assertBatchFrequencies(createdFrequencies, savedFrequencies, true); - } - - @Ignore - @Test - public void deleteBenthosBatch(/* String id */) { - SpeciesBatch esp1Batch; - SpeciesBatch batch; - Species taxon1 = species.get(0); - - // ----------------------------------------------------------------------------- - // 1. Create two batchs (parent + child), then remove the parent batch - // ----------------------------------------------------------------------------- - // batch : ESP1 Vrac/5 - batch = new SpeciesBatch(); - batch.setParentBatch(null); - batch.setFishingOperation(fishingOperationWithEmptyBatch); - batch.setSpecies(taxon1); - batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); - batch.setSampleCategoryValue(vracQualitativeValue); - batch.setSampleCategoryWeight(5f); - assertCreateAndReloadBenthosBatch(batch, null); - esp1Batch = batch; - - // batch : ESP1 Vrac/5 Male/2 - batch = new SpeciesBatch(); - batch.setParentBatch(esp1Batch); - batch.setFishingOperation(fishingOperationWithEmptyBatch); - batch.setSpecies(taxon1); - batch.setSampleCategoryType(SampleCategoryEnum.sex); - batch.setSampleCategoryValue(maleQualitativeValue); - batch.setSampleCategoryWeight(2f); - assertCreateAndReloadBenthosBatch(batch, esp1Batch.getId()); - - // Try to remove - service.deleteBenthosBatch(esp1Batch.getId()); - - // Check if remove - try { - batch = getBenthosBatch(fishingOperationWithEmptyBatch.getId(), esp1Batch.getId()); - assertNull(batch); - } catch (DataRetrievalFailureException drfe) { - assertNotNull(drfe); - } - } - - protected void assertCreateAndReloadSpeciesBatch(SpeciesBatch batch, String parentBatchId) { - batch.setFishingOperation(fishingOperationWithEmptyBatch); - - // Create batch - SpeciesBatch createdBatch = service.createSpeciesBatch(batch, parentBatchId); - assertSpeciesBatch(batch, createdBatch, false); - - // then reload (for round trip check) - SpeciesBatch reloadedBatch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), createdBatch.getId()); - if (parentBatchId == null) { - assertNull(reloadedBatch.getParentBatch()); - } else { - assertNotNull(reloadedBatch.getParentBatch()); - assertEquals(parentBatchId, reloadedBatch.getParentBatch().getId()); - } - assertSpeciesBatch(createdBatch, reloadedBatch, false); - - batch.setId(createdBatch.getId()); - } - - protected void assertCreateAndReloadBenthosBatch(SpeciesBatch batch, String parentBatchId) { - batch.setFishingOperation(fishingOperationWithEmptyBatch); - - // Create batch - SpeciesBatch createdBatch = service.createBenthosBatch(batch, parentBatchId); - assertSpeciesBatch(batch, createdBatch, false); - - // then reload (for round trip check) - SpeciesBatch reloadedBatch = getBenthosBatch(fishingOperationWithEmptyBatch.getId(), createdBatch.getId()); - if (parentBatchId == null) { - assertNull(reloadedBatch.getParentBatch()); - } else { - assertNotNull(reloadedBatch.getParentBatch()); - assertEquals(parentBatchId, reloadedBatch.getParentBatch().getId()); - } - assertSpeciesBatch(createdBatch, reloadedBatch, false); - - batch.setId(createdBatch.getId()); - } - - protected void assertCreateAndReloadCatchBatch(CatchBatch catchBatch, String fishingOperationId) { - CatchBatch createdCatchBatch = service.createCatchBatch(catchBatch); - assertNotNull(createdCatchBatch); - assertNotNull(createdCatchBatch.getId()); - assertCatchBatch(catchBatch, createdCatchBatch, false); - - CatchBatch reloadedCatchBatch = null; - try { - reloadedCatchBatch = service.getCatchBatchFromFishingOperation(fishingOperationId); - } catch (CatchBatchValidationException e) { - Assert.fail(e.getMessage()); - } - assertCatchBatch(createdCatchBatch, reloadedCatchBatch, true); - - catchBatch.setId(createdCatchBatch.getId()); - } - - protected void assertSaveAndReloadCatchBatch(CatchBatch catchBatch, String fishingOperationId) { - CatchBatch savedCatchBatch = service.saveCatchBatch(catchBatch); - assertNotNull(savedCatchBatch); - assertNotNull(savedCatchBatch.getId()); - assertCatchBatch(catchBatch, savedCatchBatch, false); - - CatchBatch reloadedCatchBatch = null; - try { - reloadedCatchBatch = service.getCatchBatchFromFishingOperation(fishingOperationId); - } catch (CatchBatchValidationException e) { - Assert.fail(e.getMessage()); - } - assertCatchBatch(savedCatchBatch, reloadedCatchBatch, true); - } - - protected void assertCatchBatch(CatchBatch expectedCatchBatch, CatchBatch actualCatchBatch, boolean assertIdEquals) { - if (expectedCatchBatch == null) { - assertNull(actualCatchBatch); - return; - } - - assertNotNull(actualCatchBatch); - if (assertIdEquals) { - assertEquals(expectedCatchBatch.getId(), actualCatchBatch.getId()); - } - assertEquals(expectedCatchBatch.getCatchTotalWeight(), actualCatchBatch.getCatchTotalWeight()); - assertEquals(expectedCatchBatch.getCatchTotalSortedCarousselWeight(), actualCatchBatch.getCatchTotalSortedCarousselWeight()); - assertEquals(expectedCatchBatch.getCatchTotalSortedTremisWeight(), actualCatchBatch.getCatchTotalSortedTremisWeight()); - assertEquals(expectedCatchBatch.getCatchTotalUnsortedWeight(), actualCatchBatch.getCatchTotalUnsortedWeight()); - - assertEquals(expectedCatchBatch.getSpeciesTotalSampleSortedWeight(), actualCatchBatch.getSpeciesTotalSampleSortedWeight()); - assertEquals(expectedCatchBatch.getSpeciesTotalSortedWeight(), actualCatchBatch.getSpeciesTotalSortedWeight()); - assertEquals(expectedCatchBatch.getSpeciesTotalUnsortedWeight(), actualCatchBatch.getSpeciesTotalUnsortedWeight()); - assertEquals(expectedCatchBatch.getSpeciesTotalInertWeight(), actualCatchBatch.getSpeciesTotalInertWeight()); - assertEquals(expectedCatchBatch.getSpeciesTotalLivingNotItemizedWeight(), actualCatchBatch.getSpeciesTotalLivingNotItemizedWeight()); - } - - protected void assertSpeciesBatch(SpeciesBatch expectedBatch, SpeciesBatch actualBatch, boolean assertIdEquals) { - assertNotNull(actualBatch); - assertNotNull(actualBatch.getId()); - if (assertIdEquals && expectedBatch.getId() != null) { - assertEquals(expectedBatch.getId(), actualBatch.getId()); - } - assertEquals(expectedBatch.getWeight(), actualBatch.getWeight()); - assertEquals(expectedBatch.getSampleCategoryType(), actualBatch.getSampleCategoryType()); - if (expectedBatch.getSampleCategoryValue() != null && expectedBatch.getSampleCategoryValue() instanceof CaracteristicQualitativeValue) { - assertNotNull("Bad sampleCategoryValue : expected <" + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId() - + "> but was <null>", - actualBatch.getSampleCategoryValue()); - assertEquals( - ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId(), - ((CaracteristicQualitativeValue) actualBatch.getSampleCategoryValue()).getId()); - } else { - assertEquals(expectedBatch.getSampleCategoryValue(), actualBatch.getSampleCategoryValue()); - } - assertEquals(expectedBatch.getSampleCategoryWeight(), actualBatch.getSampleCategoryWeight()); - assertEquals(expectedBatch.getNumber(), actualBatch.getNumber()); - assertEquals(expectedBatch.getComment(), actualBatch.getComment()); - - // Check species only if Vrac/HorsVrac or if batch has been load throw getAllxxx method - // (Because getSpeciesBatch(id) could not always retrieve the species) - if (expectedBatch.getSpecies() != null && ( - expectedBatch.getSampleCategoryType() == SampleCategoryEnum.sortedUnsorted - || actualBatch.getSpecies() != null)) { - assertNotNull(actualBatch.getSpecies()); - assertEquals(expectedBatch.getSpecies().getId(), actualBatch.getSpecies().getId()); - } - } - - protected List<SpeciesBatchFrequency> assertCreateAndReloadSpeciesBatchFrequency(List<SpeciesBatchFrequency> frequencies, String parentBatchId) { - - // Create batch - List<SpeciesBatchFrequency> createdFrequencies = service.saveSpeciesBatchFrequency(parentBatchId, frequencies); - assertBatchFrequencies(frequencies, createdFrequencies, false); - - // then reload (for round trip check) - List<SpeciesBatchFrequency> reloadedFrequencies = service.getAllSpeciesBatchFrequency(parentBatchId); - assertBatchFrequencies(createdFrequencies, reloadedFrequencies, true); - - return createdFrequencies; - } - - protected void assertBatchFrequencies(List<SpeciesBatchFrequency> expectedFrequencies, List<SpeciesBatchFrequency> actualFrequencies, - boolean assertIdEquals) { - assertNotNull(actualFrequencies); - assertEquals(expectedFrequencies.size(), actualFrequencies.size()); - - // Store actual batches into a map, using the length as key - Map<Float, SpeciesBatchFrequency> expectedLengthMap = Maps.newHashMap(); - for (SpeciesBatchFrequency speciesBatchFrequency : expectedFrequencies) { - expectedLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); - } - - // Store expected batches into a map, using the length as key - Map<Float, SpeciesBatchFrequency> actualLengthMap = Maps.newHashMap(); - for (SpeciesBatchFrequency speciesBatchFrequency : actualFrequencies) { - assertFalse("Duplicate lengthStep found in batchFrequencies, for length=" + speciesBatchFrequency.getLengthStep(), - actualLengthMap.containsKey(speciesBatchFrequency.getLengthStep())); - actualLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); - assertNotNull(speciesBatchFrequency.getId()); - } - - for (Float lengthStep : expectedLengthMap.keySet()) { - SpeciesBatchFrequency expectedBatchFrequency = expectedLengthMap.get(lengthStep); - SpeciesBatchFrequency actualBatchFrequency = actualLengthMap.get(lengthStep); - if (assertIdEquals) { - assertEquals(expectedBatchFrequency.getId(), actualBatchFrequency.getId()); - } - assertNotNull(expectedBatchFrequency.getLengthStepCaracteristic()); - assertEquals(expectedBatchFrequency.getLengthStepCaracteristic().getId(), actualBatchFrequency.getLengthStepCaracteristic().getId()); - assertEquals(expectedBatchFrequency.getNumber(), actualBatchFrequency.getNumber()); - assertEquals(expectedBatchFrequency.getWeight(), actualBatchFrequency.getWeight()); - assertEquals(expectedBatchFrequency.getComment(), actualBatchFrequency.getComment()); - // assertNotNull(expectedBatchFrequency.getBatch()); - // assertEquals(expectedBatchFrequency.getBatch().getId(), actualBatchFrequency.getBatch().getId()); - } - } - - protected SpeciesBatch getSpeciesBatch(String fishingOperationId, String speciesBatchId) { - return getSpeciesBatch(speciesBatchId, service.getRootSpeciesBatch(fishingOperationId).getChildren()); - } - - protected SpeciesBatch getBenthosBatch(String fishingOperationId, String speciesBatchId) { - return getSpeciesBatch(speciesBatchId, service.getRootBenthosBatch(fishingOperationId).getChildren()); - } - - protected SpeciesBatch getSpeciesBatch(String speciesBatchId, List<SpeciesBatch> speciesBatchs) { - if (speciesBatchs == null) { - return null; - } - for (SpeciesBatch speciesBatch : speciesBatchs) { - if (speciesBatchId.equals(speciesBatch.getId())) { - return speciesBatch; - } - if (speciesBatch.getChildBatchs() != null) { - speciesBatch = getSpeciesBatch(speciesBatchId, speciesBatch.getChildBatchs()); - if (speciesBatch != null) { - return speciesBatch; - } - } - } - return null; - } -} Added: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceReadTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceReadTest.java (rev 0) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceReadTest.java 2013-03-27 21:49:05 UTC (rev 693) @@ -0,0 +1,188 @@ +package fr.ifremer.tutti.persistence.service; + +/* + * #%L + * Tutti :: Persistence API + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import com.google.common.collect.Maps; +import fr.ifremer.tutti.persistence.DatabaseResource; +import fr.ifremer.tutti.persistence.entities.data.BatchContainer; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.SampleCategoryEnum; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; +import org.junit.Before; +import org.junit.ClassRule; +import org.junit.Ignore; +import org.junit.Test; + +import java.util.List; +import java.util.Map; + +import static org.junit.Assert.assertEquals; +import static org.junit.Assert.assertFalse; +import static org.junit.Assert.assertNotNull; +import static org.junit.Assert.assertTrue; + +/** + * To test {@link BenthosBatchPersistenceService} for read operation. + * + * @author tchemit <chemit(a)codelutin.com> + * @since 1.0 + */ +@Ignore +public class BenthosBatchPersistenceServiceReadTest { + + @ClassRule + public static final DatabaseResource dbResource = DatabaseResource.writeDb(); + + protected BenthosBatchPersistenceService service; + + protected FishingOperationPersistenceService fishingOperationService; + + protected FishingOperation fishingOperation; + + @Before + public void setUp() throws Exception { + service = TuttiPersistenceServiceLocator.getBenthosBatchPersistenceService(); + fishingOperationService = TuttiPersistenceServiceLocator.getFishingOperationPersistenceService(); + + List<FishingOperation> fishingOperations = fishingOperationService.getAllFishingOperation(dbResource.getFixtures().cruiseId()); + assertNotNull(fishingOperations); + assertTrue(fishingOperations.size() > 0); + fishingOperation = fishingOperations.get(0); + assertNotNull(fishingOperation); + assertNotNull(fishingOperation.getId()); + } + + @Ignore + @Test + public void getRootBenthosBatch(/*String fishingOperationId*/) { + //TODO Do me! + service.getRootBenthosBatch(fishingOperation.getId()); + } + + @Ignore + @Test + public void getAllBenthosBatchFrequency(/*String speciesBatchId*/) { + //TODO Do me! + service.getAllBenthosBatchFrequency(fishingOperation.getId()); + } + + + public static void assertSpeciesBatch(SpeciesBatch expectedBatch, + SpeciesBatch actualBatch, + boolean assertIdEquals) { + assertNotNull(actualBatch); + assertNotNull(actualBatch.getId()); + if (assertIdEquals && expectedBatch.getId() != null) { + assertEquals(expectedBatch.getId(), actualBatch.getId()); + } + assertEquals(expectedBatch.getWeight(), actualBatch.getWeight()); + assertEquals(expectedBatch.getSampleCategoryType(), actualBatch.getSampleCategoryType()); + if (expectedBatch.getSampleCategoryValue() != null && expectedBatch.getSampleCategoryValue() instanceof CaracteristicQualitativeValue) { + assertNotNull("Bad sampleCategoryValue : expected <" + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId() + "> but was <null>", + actualBatch.getSampleCategoryValue()); + assertEquals( + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId(), + ((CaracteristicQualitativeValue) actualBatch.getSampleCategoryValue()).getId()); + } else { + assertEquals(expectedBatch.getSampleCategoryValue(), actualBatch.getSampleCategoryValue()); + } + assertEquals(expectedBatch.getSampleCategoryWeight(), actualBatch.getSampleCategoryWeight()); + assertEquals(expectedBatch.getNumber(), actualBatch.getNumber()); + assertEquals(expectedBatch.getComment(), actualBatch.getComment()); + + // Check species only if Vrac/HorsVrac or if batch has been load throw getAllxxx method + // (Because getSpeciesBatch(id) could not always retrieve the species) + if (expectedBatch.getSpecies() != null && ( + expectedBatch.getSampleCategoryType() == SampleCategoryEnum.sortedUnsorted + || actualBatch.getSpecies() != null)) { + assertNotNull(actualBatch.getSpecies()); + assertEquals(expectedBatch.getSpecies().getId(), actualBatch.getSpecies().getId()); + } + } + + public static void assertBatchFrequencies(List<SpeciesBatchFrequency> expectedFrequencies, + List<SpeciesBatchFrequency> actualFrequencies, + boolean assertIdEquals) { + assertNotNull(actualFrequencies); + assertEquals(expectedFrequencies.size(), actualFrequencies.size()); + + // Store actual batches into a map, using the length as key + Map<Float, SpeciesBatchFrequency> expectedLengthMap = Maps.newHashMap(); + for (SpeciesBatchFrequency speciesBatchFrequency : expectedFrequencies) { + expectedLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); + } + + // Store expected batches into a map, using the length as key + Map<Float, SpeciesBatchFrequency> actualLengthMap = Maps.newHashMap(); + for (SpeciesBatchFrequency speciesBatchFrequency : actualFrequencies) { + assertFalse("Duplicate lengthStep found in batchFrequencies, for length=" + speciesBatchFrequency.getLengthStep(), actualLengthMap.containsKey(speciesBatchFrequency.getLengthStep())); + actualLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); + assertNotNull(speciesBatchFrequency.getId()); + } + + for (Float lengthStep : expectedLengthMap.keySet()) { + SpeciesBatchFrequency expectedBatchFrequency = expectedLengthMap.get(lengthStep); + SpeciesBatchFrequency actualBatchFrequency = actualLengthMap.get(lengthStep); + if (assertIdEquals) { + assertEquals(expectedBatchFrequency.getId(), actualBatchFrequency.getId()); + } + assertNotNull(expectedBatchFrequency.getLengthStepCaracteristic()); + assertEquals(expectedBatchFrequency.getLengthStepCaracteristic().getId(), actualBatchFrequency.getLengthStepCaracteristic().getId()); + assertEquals(expectedBatchFrequency.getNumber(), actualBatchFrequency.getNumber()); + assertEquals(expectedBatchFrequency.getWeight(), actualBatchFrequency.getWeight()); + assertEquals(expectedBatchFrequency.getComment(), actualBatchFrequency.getComment()); + //assertNotNull(expectedBatchFrequency.getBatch()); + //assertEquals(expectedBatchFrequency.getBatch().getId(), actualBatchFrequency.getBatch().getId()); + } + } + + public SpeciesBatch getSpeciesBatch(String fishingOperationId, + String speciesBatchId) { + BatchContainer<SpeciesBatch> rootSpeciesBatch = service.getRootBenthosBatch(fishingOperationId); + return getSpeciesBatch(speciesBatchId, rootSpeciesBatch.getChildren()); + } + + public static SpeciesBatch getSpeciesBatch(String speciesBatchId, + List<SpeciesBatch> speciesBatchs) { + if (speciesBatchs == null) { + return null; + } + for (SpeciesBatch speciesBatch : speciesBatchs) { + if (speciesBatchId.equals(speciesBatch.getId())) { + return speciesBatch; + } + if (speciesBatch.getChildBatchs() != null) { + speciesBatch = getSpeciesBatch(speciesBatchId, speciesBatch.getChildBatchs()); + if (speciesBatch != null) { + return speciesBatch; + } + } + } + return null; + } + +} Property changes on: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceReadTest.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Added: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceWriteTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceWriteTest.java (rev 0) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceWriteTest.java 2013-03-27 21:49:05 UTC (rev 693) @@ -0,0 +1,533 @@ +package fr.ifremer.tutti.persistence.service; + +/* + * #%L + * Tutti :: Persistence API + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import com.google.common.collect.Lists; +import com.google.common.collect.Maps; +import fr.ifremer.tutti.persistence.DatabaseResource; +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.SampleCategoryEnum; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicType; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.persistence.entities.referential.TuttiLocation; +import org.junit.Assert; +import org.junit.Before; +import org.junit.ClassRule; +import org.junit.Test; +import org.springframework.dao.DataRetrievalFailureException; + +import java.util.Calendar; +import java.util.Date; +import java.util.GregorianCalendar; +import java.util.List; +import java.util.Map; + +import static org.junit.Assert.assertEquals; +import static org.junit.Assert.assertFalse; +import static org.junit.Assert.assertNotNull; +import static org.junit.Assert.assertNull; +import static org.junit.Assert.assertTrue; + +/** + * To test {@link BenthosBatchPersistenceService} for write operation. + * + * @author tchemit <chemit(a)codelutin.com> + * @since 1.0 + */ +public class BenthosBatchPersistenceServiceWriteTest { + + @ClassRule + public static final DatabaseResource dbResource = DatabaseResource.writeDb(); + + protected BenthosBatchPersistenceService service; + + protected CatchBatchPersistenceService catchBatchService; + + protected CruisePersistenceService cruiseService; + + protected FishingOperationPersistenceService fishingOperationService; + + protected ReferentialPersistenceService referentialService; + + /* + * Entities prepared in setUp() : + * */ + protected Cruise cruise; + + protected FishingOperation fishingOperationNoCatchBatch; + + protected FishingOperation fishingOperationWithEmptyBatch; + + protected CatchBatch catchBacth; + + protected List<Species> species; + + protected Caracteristic sortedUnsortedPMFM; + + protected CaracteristicQualitativeValue horsVracQualitativeValue; + + protected CaracteristicQualitativeValue vracQualitativeValue; + + protected Caracteristic maturityPMFM; + + protected CaracteristicQualitativeValue firstMaturityQualitativeValue; + + protected Caracteristic sexPMFM; + + protected CaracteristicQualitativeValue maleQualitativeValue; + + protected CaracteristicQualitativeValue femaleQualitativeValue; + + protected CaracteristicQualitativeValue unkQualitativeValue; + + protected Caracteristic frequencyPMFM; + + @Before + public void setUp() throws Exception { + + service = TuttiPersistenceServiceLocator.getBenthosBatchPersistenceService(); + cruiseService = TuttiPersistenceServiceLocator.getCruisePersistenceService(); + catchBatchService = TuttiPersistenceServiceLocator.getCatchBatchPersistenceService(); + fishingOperationService = TuttiPersistenceServiceLocator.getFishingOperationPersistenceService(); + referentialService = TuttiPersistenceServiceLocator.getReferentialPersistenceService(); + + species = referentialService.getAllSpecies(); + assertNotNull(species); + assertTrue(species.size() > 2); + + cruise = cruiseService.getCruise(dbResource.getFixtures().cruiseId()); + cruise.setId((String) null); + Calendar calendar = new GregorianCalendar(); + cruise.setBeginDate(calendar.getTime()); + calendar.add(Calendar.MONTH, 1); // add one month + cruise.setEndDate(calendar.getTime()); + List<TuttiLocation> allHarbour = referentialService.getAllHarbour(); + Assert.assertNotNull(allHarbour); + Assert.assertTrue(allHarbour.size() > 1); + cruise.setDepartureLocation(allHarbour.get(0)); + cruise.setReturnLocation(allHarbour.get(1)); + + cruise = cruiseService.createCruise(cruise); + + // Create a first operation, with no cacth batch : to test CatchBatch insert/update : + List<FishingOperation> fishingOperations = fishingOperationService.getAllFishingOperation(dbResource.getFixtures().cruiseId()); + assertNotNull(fishingOperations); + assertTrue(fishingOperations.size() > 0); + fishingOperationNoCatchBatch = fishingOperations.get(0); + fishingOperationNoCatchBatch = fishingOperationService.getFishingOperation(fishingOperationNoCatchBatch.getId()); + fishingOperationNoCatchBatch.setId((String) null); + fishingOperationNoCatchBatch.setCruise(cruise); + calendar.setTime(new Date()); + calendar.set(Calendar.HOUR_OF_DAY, 1); + calendar.set(Calendar.MILLISECOND, 0); + fishingOperationNoCatchBatch.setGearShootingStartDate(calendar.getTime()); + calendar.setTime(new Date()); + calendar.set(Calendar.HOUR_OF_DAY, 10); + calendar.set(Calendar.MILLISECOND, 0); + fishingOperationNoCatchBatch.setGearShootingEndDate(calendar.getTime()); + fishingOperationNoCatchBatch = fishingOperationService.createFishingOperation(fishingOperationNoCatchBatch); + + // Create a second operation, with no cacth batch : to test CatchBatch insert/update : + fishingOperationWithEmptyBatch = fishingOperations.get(1); + fishingOperationWithEmptyBatch = fishingOperationService.getFishingOperation(fishingOperationWithEmptyBatch.getId()); + fishingOperationWithEmptyBatch.setId((String) null); + fishingOperationWithEmptyBatch.setCruise(cruise); + calendar.setTime(new Date()); + calendar.set(Calendar.HOUR_OF_DAY, 11); + calendar.set(Calendar.MILLISECOND, 0); + fishingOperationWithEmptyBatch.setGearShootingStartDate(calendar.getTime()); + calendar.setTime(new Date()); + calendar.set(Calendar.HOUR_OF_DAY, 12); + calendar.set(Calendar.MILLISECOND, 0); + fishingOperationWithEmptyBatch.setGearShootingEndDate(calendar.getTime()); + fishingOperationWithEmptyBatch = fishingOperationService.createFishingOperation(fishingOperationWithEmptyBatch); + + catchBacth = new CatchBatch(); + catchBacth.setFishingOperation(fishingOperationWithEmptyBatch); + catchBacth = catchBatchService.createCatchBatch(catchBacth); + + sortedUnsortedPMFM = referentialService.getSortedUnsortedCaracteristic(); + horsVracQualitativeValue = sortedUnsortedPMFM.getQualitativeValue(0); + vracQualitativeValue = sortedUnsortedPMFM.getQualitativeValue(1); + maturityPMFM = referentialService.getMaturityCaracteristic(); + firstMaturityQualitativeValue = maturityPMFM.getQualitativeValue(0); + sexPMFM = referentialService.getSexCaracteristic(); + maleQualitativeValue = sexPMFM.getQualitativeValue(1); + femaleQualitativeValue = sexPMFM.getQualitativeValue(2); + unkQualitativeValue = sexPMFM.getQualitativeValue(3); + + List<Caracteristic> cara = referentialService.getAllCaracteristic(); + for (Caracteristic caracteristic : cara) { + if (caracteristic.getCaracteristicType() == CaracteristicType.NUMBER + && caracteristic.getPrecision() != null + && caracteristic.getPrecision() == 0.5f) { + frequencyPMFM = caracteristic; + break; + } + } + assertNotNull("no numerical PMFM with a precision has been found. Could not define a PMFM for batch frequencies.", frequencyPMFM); + + } + + @Test + public void createAndSaveBenthosBatchAndFrequencies() { + SpeciesBatch esp1Batch; + SpeciesBatch esp2Batch; + SpeciesBatch frequenciesParentBatch; + SpeciesBatch batch; + Species taxon1 = species.get(0); + Species taxon2 = species.get(1); + + // ----------------------------------------------------------------------------- + // 1. Test with only mandatory properties + // ----------------------------------------------------------------------------- + // batch : "ESP1 - Vrac/5" + batch = new SpeciesBatch(); + batch.setParentBatch(null); + batch.setFishingOperation(fishingOperationNoCatchBatch); + batch.setSpecies(taxon1); + batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); + batch.setSampleCategoryValue(vracQualitativeValue); + batch.setSampleCategoryWeight(5f); + + assertCreateAndReloadBenthosBatch(batch, null); + + // Save ESP1 batch + esp1Batch = batch; + + // ----------------------------------------------------------------------------- + // 2. Test child "Male/2" + // ----------------------------------------------------------------------------- + // Batch : ESP1 - Vrac/5 Male/2 ss-ech/1 Nombre/7 + batch = new SpeciesBatch(); + batch.setId((String) null); + batch.setParentBatch(esp1Batch); + batch.setSpecies(taxon1); + batch.setComment("ESP1 - Vrac/5 Male/2 ss-ech/1 Nombre/7"); + batch.setSampleCategoryType(SampleCategoryEnum.sex); + batch.setSampleCategoryValue(maleQualitativeValue); + batch.setSampleCategoryWeight(2f); + batch.setWeight(1f); + batch.setNumber(7); + + assertCreateAndReloadBenthosBatch(batch, batch.getParentBatch().getId()); + + // ----------------------------------------------------------------------------- + // 3. Test child "Female/2" + // ----------------------------------------------------------------------------- + // Batch : ESP1 - Vrac/5 Female/3 Nombre/14 + batch = new SpeciesBatch(); + batch.setId((String) null); + batch.setParentBatch(esp1Batch); + batch.setSpecies(taxon1); + batch.setComment("ESP1 - Vrac/5 Female/3 Nombre/14"); + batch.setSampleCategoryType(SampleCategoryEnum.sex); + batch.setSampleCategoryValue(femaleQualitativeValue); + batch.setSampleCategoryWeight(3f); + batch.setWeight(null); + batch.setNumber(14); + + assertCreateAndReloadBenthosBatch(batch, batch.getParentBatch().getId()); + + // ----------------------------------------------------------------------------- + // 4. Test : ESP2 - Vrac/7 + // \- ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11 + // ----------------------------------------------------------------------------- + // batch : "ESP2 - Vrac/7 " + batch = new SpeciesBatch(); + batch.setParentBatch(null); + batch.setSpecies(taxon2); + batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); + batch.setSampleCategoryValue(vracQualitativeValue); + batch.setSampleCategoryWeight(7f); + + assertCreateAndReloadBenthosBatch(batch, null); + esp2Batch = batch; + + // Batch : ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11 + batch = new SpeciesBatch(); + batch.setId((String) null); + batch.setParentBatch(esp2Batch); + batch.setSpecies(taxon2); + batch.setComment("ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11"); + batch.setSampleCategoryType(SampleCategoryEnum.maturity); + batch.setSampleCategoryValue(firstMaturityQualitativeValue); + batch.setSampleCategoryWeight(2f); + batch.setWeight(1f); + batch.setNumber(11); + + assertCreateAndReloadBenthosBatch(batch, batch.getParentBatch().getId()); + + // ----------------------------------------------------------------------------- + // 5. Test save after modifications + // ----------------------------------------------------------------------------- + // Batch : ESP2 - Vrac/7 UNK/1.75 ss-ech/1.11 Nombre/99 + batch.setComment("ESP2 - Vrac/7 UNK/1.75 ss-ech/1.11 Nombre/99"); + batch.setSampleCategoryType(SampleCategoryEnum.sex); + batch.setSampleCategoryValue(unkQualitativeValue); + batch.setSampleCategoryWeight(1.75f); + batch.setWeight(1.11f); + batch.setFishingOperation(fishingOperationWithEmptyBatch); + batch.setNumber(99); + + // Save and reload, then check + SpeciesBatch savedBatch = service.saveBenthosBatch(batch); + assertSpeciesBatch(savedBatch, batch, false); + SpeciesBatch reloadedBatch = getBenthosBatch(fishingOperationWithEmptyBatch.getId(), savedBatch.getId()); + assertSpeciesBatch(savedBatch, reloadedBatch, true); + + // Save batch for later + frequenciesParentBatch = batch; + + // ----------------------------------------------------------------------------- + // 6. Test change species + // ----------------------------------------------------------------------------- + esp2Batch.setSpecies(taxon1); + service.changeBenthosBatchSpecies(esp2Batch.getId(), taxon1); + assertSpeciesBatch(savedBatch, batch, false); + reloadedBatch = getBenthosBatch(fishingOperationWithEmptyBatch.getId(), esp2Batch.getId()); + assertSpeciesBatch(esp2Batch, reloadedBatch, true); + + // ----------------------------------------------------------------------------- + // 7. Test get all root species + // ----------------------------------------------------------------------------- + List<SpeciesBatch> rootSpeciesBatch = service.getRootBenthosBatch(fishingOperationWithEmptyBatch.getId()).getChildren(); + assertNotNull(rootSpeciesBatch); + assertEquals(2, rootSpeciesBatch.size()); + assertNotNull(rootSpeciesBatch.get(0).getChildBatchs()); + assertTrue(rootSpeciesBatch.get(0).getChildBatchs().size() > 0); + assertNotNull(rootSpeciesBatch.get(1).getChildBatchs()); + assertTrue(rootSpeciesBatch.get(1).getChildBatchs().size() > 0); + + // ----------------------------------------------------------------------------- + // 8. Test batch frequency creation + // ----------------------------------------------------------------------------- + + List<SpeciesBatchFrequency> frequencies = Lists.newArrayList(); + float lengthStep = 0.5f; + for (float length = lengthStep; length < lengthStep * 20; length += lengthStep) { + SpeciesBatchFrequency frequency = new SpeciesBatchFrequency(); + frequency.setLengthStep(length); + frequency.setNumber((int) (length * 2)); + frequency.setWeight(0.01f * length * 2); + frequency.setLengthStepCaracteristic(frequencyPMFM); + frequency.setBatch(frequenciesParentBatch); + frequency.setComment("comments"); + frequencies.add(frequency); + } + List<SpeciesBatchFrequency> createdFrequencies = assertCreateAndReloadBenthosBatchFrequency(frequencies, frequenciesParentBatch.getId()); + + // ----------------------------------------------------------------------------- + // 9. Test batch frequency update + // ----------------------------------------------------------------------------- + // Update some batchs (1cm, 2cm, etc) + for (SpeciesBatchFrequency speciesBatchFrequency : createdFrequencies) { + float length = speciesBatchFrequency.getLengthStep(); + if ((float) (int) length == length) { + speciesBatchFrequency.setNumber(12); + speciesBatchFrequency.setComment(null); + } + } + // And remove the last item (should be deleted in DB) + // Note: use a new list (everything list coming from service are not modifiable) + createdFrequencies = Lists.newArrayList(createdFrequencies); + createdFrequencies.remove(createdFrequencies.size() - 1); + + List<SpeciesBatchFrequency> savedFrequencies = service.saveBenthosBatchFrequency(frequenciesParentBatch.getId(), createdFrequencies); + assertBatchFrequencies(createdFrequencies, savedFrequencies, true); + } + + @Test + public void deleteBenthosBatch(/* String id */) { + SpeciesBatch esp1Batch; + SpeciesBatch batch; + Species taxon1 = species.get(0); + + // ----------------------------------------------------------------------------- + // 1. Create two batchs (parent + child), then remove the parent batch + // ----------------------------------------------------------------------------- + // batch : ESP1 Vrac/5 + batch = new SpeciesBatch(); + batch.setParentBatch(null); + batch.setFishingOperation(fishingOperationWithEmptyBatch); + batch.setSpecies(taxon1); + batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); + batch.setSampleCategoryValue(vracQualitativeValue); + batch.setSampleCategoryWeight(5f); + assertCreateAndReloadBenthosBatch(batch, null); + esp1Batch = batch; + + // batch : ESP1 Vrac/5 Male/2 + batch = new SpeciesBatch(); + batch.setParentBatch(esp1Batch); + batch.setFishingOperation(fishingOperationWithEmptyBatch); + batch.setSpecies(taxon1); + batch.setSampleCategoryType(SampleCategoryEnum.sex); + batch.setSampleCategoryValue(maleQualitativeValue); + batch.setSampleCategoryWeight(2f); + assertCreateAndReloadBenthosBatch(batch, esp1Batch.getId()); + + // Try to remove + service.deleteBenthosBatch(esp1Batch.getId()); + + // Check if remove + try { + batch = getBenthosBatch(fishingOperationWithEmptyBatch.getId(), esp1Batch.getId()); + assertNull(batch); + } catch (DataRetrievalFailureException drfe) { + assertNotNull(drfe); + } + } + + protected void assertCreateAndReloadBenthosBatch(SpeciesBatch batch, String parentBatchId) { + batch.setFishingOperation(fishingOperationWithEmptyBatch); + + // Create batch + SpeciesBatch createdBatch = service.createBenthosBatch(batch, parentBatchId); + assertSpeciesBatch(batch, createdBatch, false); + + // then reload (for round trip check) + SpeciesBatch reloadedBatch = getBenthosBatch(fishingOperationWithEmptyBatch.getId(), createdBatch.getId()); + if (parentBatchId == null) { + assertNull(reloadedBatch.getParentBatch()); + } else { + assertNotNull(reloadedBatch.getParentBatch()); + assertEquals(parentBatchId, reloadedBatch.getParentBatch().getId()); + } + assertSpeciesBatch(createdBatch, reloadedBatch, false); + + batch.setId(createdBatch.getId()); + } + + protected void assertSpeciesBatch(SpeciesBatch expectedBatch, SpeciesBatch actualBatch, boolean assertIdEquals) { + assertNotNull(actualBatch); + assertNotNull(actualBatch.getId()); + if (assertIdEquals && expectedBatch.getId() != null) { + assertEquals(expectedBatch.getId(), actualBatch.getId()); + } + assertEquals(expectedBatch.getWeight(), actualBatch.getWeight()); + assertEquals(expectedBatch.getSampleCategoryType(), actualBatch.getSampleCategoryType()); + if (expectedBatch.getSampleCategoryValue() != null && expectedBatch.getSampleCategoryValue() instanceof CaracteristicQualitativeValue) { + assertNotNull("Bad sampleCategoryValue : expected <" + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId() + + "> but was <null>", + actualBatch.getSampleCategoryValue()); + assertEquals( + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId(), + ((CaracteristicQualitativeValue) actualBatch.getSampleCategoryValue()).getId()); + } else { + assertEquals(expectedBatch.getSampleCategoryValue(), actualBatch.getSampleCategoryValue()); + } + assertEquals(expectedBatch.getSampleCategoryWeight(), actualBatch.getSampleCategoryWeight()); + assertEquals(expectedBatch.getNumber(), actualBatch.getNumber()); + assertEquals(expectedBatch.getComment(), actualBatch.getComment()); + + // Check species only if Vrac/HorsVrac or if batch has been load throw getAllxxx method + // (Because getSpeciesBatch(id) could not always retrieve the species) + if (expectedBatch.getSpecies() != null && ( + expectedBatch.getSampleCategoryType() == SampleCategoryEnum.sortedUnsorted + || actualBatch.getSpecies() != null)) { + assertNotNull(actualBatch.getSpecies()); + assertEquals(expectedBatch.getSpecies().getId(), actualBatch.getSpecies().getId()); + } + } + + protected List<SpeciesBatchFrequency> assertCreateAndReloadBenthosBatchFrequency(List<SpeciesBatchFrequency> frequencies, String parentBatchId) { + + // Create batch + List<SpeciesBatchFrequency> createdFrequencies = service.saveBenthosBatchFrequency(parentBatchId, frequencies); + assertBatchFrequencies(frequencies, createdFrequencies, false); + + // then reload (for round trip check) + List<SpeciesBatchFrequency> reloadedFrequencies = service.getAllBenthosBatchFrequency(parentBatchId); + assertBatchFrequencies(createdFrequencies, reloadedFrequencies, true); + + return createdFrequencies; + } + + protected void assertBatchFrequencies(List<SpeciesBatchFrequency> expectedFrequencies, + List<SpeciesBatchFrequency> actualFrequencies, + boolean assertIdEquals) { + assertNotNull(actualFrequencies); + assertEquals(expectedFrequencies.size(), actualFrequencies.size()); + + // Store actual batches into a map, using the length as key + Map<Float, SpeciesBatchFrequency> expectedLengthMap = Maps.newHashMap(); + for (SpeciesBatchFrequency speciesBatchFrequency : expectedFrequencies) { + expectedLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); + } + + // Store expected batches into a map, using the length as key + Map<Float, SpeciesBatchFrequency> actualLengthMap = Maps.newHashMap(); + for (SpeciesBatchFrequency speciesBatchFrequency : actualFrequencies) { + assertFalse("Duplicate lengthStep found in batchFrequencies, for length=" + speciesBatchFrequency.getLengthStep(), + actualLengthMap.containsKey(speciesBatchFrequency.getLengthStep())); + actualLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); + assertNotNull(speciesBatchFrequency.getId()); + } + + for (Float lengthStep : expectedLengthMap.keySet()) { + SpeciesBatchFrequency expectedBatchFrequency = expectedLengthMap.get(lengthStep); + SpeciesBatchFrequency actualBatchFrequency = actualLengthMap.get(lengthStep); + if (assertIdEquals) { + assertEquals(expectedBatchFrequency.getId(), actualBatchFrequency.getId()); + } + assertNotNull(expectedBatchFrequency.getLengthStepCaracteristic()); + assertEquals(expectedBatchFrequency.getLengthStepCaracteristic().getId(), actualBatchFrequency.getLengthStepCaracteristic().getId()); + assertEquals(expectedBatchFrequency.getNumber(), actualBatchFrequency.getNumber()); + assertEquals(expectedBatchFrequency.getWeight(), actualBatchFrequency.getWeight()); + assertEquals(expectedBatchFrequency.getComment(), actualBatchFrequency.getComment()); + // assertNotNull(expectedBatchFrequency.getBatch()); + // assertEquals(expectedBatchFrequency.getBatch().getId(), actualBatchFrequency.getBatch().getId()); + } + } + + protected SpeciesBatch getBenthosBatch(String fishingOperationId, String speciesBatchId) { + return getSpeciesBatch(speciesBatchId, service.getRootBenthosBatch(fishingOperationId).getChildren()); + } + + protected SpeciesBatch getSpeciesBatch(String speciesBatchId, List<SpeciesBatch> speciesBatchs) { + if (speciesBatchs == null) { + return null; + } + for (SpeciesBatch speciesBatch : speciesBatchs) { + if (speciesBatchId.equals(speciesBatch.getId())) { + return speciesBatch; + } + if (speciesBatch.getChildBatchs() != null) { + speciesBatch = getSpeciesBatch(speciesBatchId, speciesBatch.getChildBatchs()); + if (speciesBatch != null) { + return speciesBatch; + } + } + } + return null; + } +} Property changes on: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceWriteTest.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: svn:eol-style + native Copied: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceReadTest.java (from rev 684, trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceReadTest.java) =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceReadTest.java (rev 0) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceReadTest.java 2013-03-27 21:49:05 UTC (rev 693) @@ -0,0 +1,77 @@ +package fr.ifremer.tutti.persistence.service; + +/* + * #%L + * Tutti :: Persistence API + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidationException; +import fr.ifremer.tutti.persistence.DatabaseResource; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import org.junit.Before; +import org.junit.ClassRule; +import org.junit.Test; + +import java.util.List; + +import static org.junit.Assert.assertNotNull; +import static org.junit.Assert.assertTrue; + +/** + * To test {@link CatchBatchPersistenceService} for read operation. + * + * @author tchemit <chemit(a)codelutin.com> + * @since 1.0 + */ +public class CatchBatchPersistenceServiceReadTest { + + @ClassRule + public static final DatabaseResource dbResource = DatabaseResource.writeDb(); + + protected CatchBatchPersistenceService service; + + protected FishingOperationPersistenceService fishingOperationService; + + protected FishingOperation fishingOperation; + + @Before + public void setUp() throws Exception { + service = TuttiPersistenceServiceLocator.getCatchBatchPersistenceService(); + fishingOperationService = TuttiPersistenceServiceLocator.getFishingOperationPersistenceService(); + + List<FishingOperation> fishingOperations = fishingOperationService.getAllFishingOperation(dbResource.getFixtures().cruiseId()); + assertNotNull(fishingOperations); + assertTrue(fishingOperations.size() > 0); + fishingOperation = fishingOperations.get(0); + assertNotNull(fishingOperation); + assertNotNull(fishingOperation.getId()); + } + + @Test(expected = CatchBatchValidationException.class) + public void getCatchBatchFromFishingOperation() throws Exception { + + //TODO-TC Change test when data will be Tutti-aware + // old CGFS tree structure is still not valid + service.getCatchBatchFromFishingOperation(fishingOperation.getId()); + } + +} Copied: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceWriteTest.java (from rev 684, trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceWriteTest.java) =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceWriteTest.java (rev 0) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceWriteTest.java 2013-03-27 21:49:05 UTC (rev 693) @@ -0,0 +1,323 @@ +package fr.ifremer.tutti.persistence.service; + +/* + * #%L + * Tutti :: Persistence API + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidationException; +import fr.ifremer.tutti.persistence.DatabaseResource; +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicType; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.persistence.entities.referential.TuttiLocation; +import org.junit.Assert; +import org.junit.Before; +import org.junit.ClassRule; +import org.junit.Test; + +import java.util.Calendar; +import java.util.Date; +import java.util.GregorianCalendar; +import java.util.List; + +import static org.junit.Assert.assertEquals; +import static org.junit.Assert.assertNotNull; +import static org.junit.Assert.assertNull; +import static org.junit.Assert.assertTrue; + +/** + * To test {@link CatchBatchPersistenceService} for write operation. + * + * @author tchemit <chemit(a)codelutin.com> + * @since 1.0 + */ +public class CatchBatchPersistenceServiceWriteTest { + + @ClassRule + public static final DatabaseResource dbResource = DatabaseResource.writeDb(); + + protected CatchBatchPersistenceService service; + + protected CruisePersistenceService cruiseService; + + protected FishingOperationPersistenceService fishingOperationService; + + protected ReferentialPersistenceService referentialService; + + /* + * Entities prepared in setUp() : + * */ + protected Cruise cruise; + + protected FishingOperation fishingOperationNoCatchBatch; + + protected FishingOperation fishingOperationWithEmptyBatch; + + protected CatchBatch catchBacth; + + protected List<Species> species; + + protected Caracteristic sortedUnsortedPMFM; + + protected CaracteristicQualitativeValue horsVracQualitativeValue; + + protected CaracteristicQualitativeValue vracQualitativeValue; + + protected Caracteristic maturityPMFM; + + protected CaracteristicQualitativeValue firstMaturityQualitativeValue; + + protected Caracteristic sexPMFM; + + protected CaracteristicQualitativeValue maleQualitativeValue; + + protected CaracteristicQualitativeValue femaleQualitativeValue; + + protected CaracteristicQualitativeValue unkQualitativeValue; + + protected Caracteristic frequencyPMFM; + + @Before + public void setUp() throws Exception { + service = TuttiPersistenceServiceLocator.getCatchBatchPersistenceService(); + cruiseService = TuttiPersistenceServiceLocator.getCruisePersistenceService(); + fishingOperationService = TuttiPersistenceServiceLocator.getFishingOperationPersistenceService(); + referentialService = TuttiPersistenceServiceLocator.getReferentialPersistenceService(); + + species = referentialService.getAllSpecies(); + assertNotNull(species); + assertTrue(species.size() > 2); + + cruise = cruiseService.getCruise(dbResource.getFixtures().cruiseId()); + cruise.setId((String) null); + Calendar calendar = new GregorianCalendar(); + cruise.setBeginDate(calendar.getTime()); + calendar.add(Calendar.MONTH, 1); // add one month + cruise.setEndDate(calendar.getTime()); + List<TuttiLocation> allHarbour = referentialService.getAllHarbour(); + Assert.assertNotNull(allHarbour); + Assert.assertTrue(allHarbour.size() > 1); + cruise.setDepartureLocation(allHarbour.get(0)); + cruise.setReturnLocation(allHarbour.get(1)); + + cruise = cruiseService.createCruise(cruise); + + // Create a first operation, with no cacth batch : to test CatchBatch insert/update : + List<FishingOperation> fishingOperations = fishingOperationService.getAllFishingOperation(dbResource.getFixtures().cruiseId()); + assertNotNull(fishingOperations); + assertTrue(fishingOperations.size() > 0); + fishingOperationNoCatchBatch = fishingOperations.get(0); + fishingOperationNoCatchBatch = fishingOperationService.getFishingOperation(fishingOperationNoCatchBatch.getId()); + fishingOperationNoCatchBatch.setId((String) null); + fishingOperationNoCatchBatch.setCruise(cruise); + calendar.setTime(new Date()); + calendar.set(Calendar.HOUR_OF_DAY, 1); + calendar.set(Calendar.MILLISECOND, 0); + fishingOperationNoCatchBatch.setGearShootingStartDate(calendar.getTime()); + calendar.setTime(new Date()); + calendar.set(Calendar.HOUR_OF_DAY, 10); + calendar.set(Calendar.MILLISECOND, 0); + fishingOperationNoCatchBatch.setGearShootingEndDate(calendar.getTime()); + fishingOperationNoCatchBatch = fishingOperationService.createFishingOperation(fishingOperationNoCatchBatch); + + // Create a second operation, with no cacth batch : to test CatchBatch insert/update : + fishingOperationWithEmptyBatch = fishingOperations.get(1); + fishingOperationWithEmptyBatch = fishingOperationService.getFishingOperation(fishingOperationWithEmptyBatch.getId()); + fishingOperationWithEmptyBatch.setId((String) null); + fishingOperationWithEmptyBatch.setCruise(cruise); + calendar.setTime(new Date()); + calendar.set(Calendar.HOUR_OF_DAY, 11); + calendar.set(Calendar.MILLISECOND, 0); + fishingOperationWithEmptyBatch.setGearShootingStartDate(calendar.getTime()); + calendar.setTime(new Date()); + calendar.set(Calendar.HOUR_OF_DAY, 12); + calendar.set(Calendar.MILLISECOND, 0); + fishingOperationWithEmptyBatch.setGearShootingEndDate(calendar.getTime()); + fishingOperationWithEmptyBatch = fishingOperationService.createFishingOperation(fishingOperationWithEmptyBatch); + + catchBacth = new CatchBatch(); + catchBacth.setFishingOperation(fishingOperationWithEmptyBatch); + catchBacth = service.createCatchBatch(catchBacth); + + sortedUnsortedPMFM = referentialService.getSortedUnsortedCaracteristic(); + horsVracQualitativeValue = sortedUnsortedPMFM.getQualitativeValue(0); + vracQualitativeValue = sortedUnsortedPMFM.getQualitativeValue(1); + maturityPMFM = referentialService.getMaturityCaracteristic(); + firstMaturityQualitativeValue = maturityPMFM.getQualitativeValue(0); + sexPMFM = referentialService.getSexCaracteristic(); + maleQualitativeValue = sexPMFM.getQualitativeValue(1); + femaleQualitativeValue = sexPMFM.getQualitativeValue(2); + unkQualitativeValue = sexPMFM.getQualitativeValue(3); + + List<Caracteristic> cara = referentialService.getAllCaracteristic(); + for (Caracteristic caracteristic : cara) { + if (caracteristic.getCaracteristicType() == CaracteristicType.NUMBER + && caracteristic.getPrecision() != null + && caracteristic.getPrecision() == 0.5f) { + frequencyPMFM = caracteristic; + break; + } + } + assertNotNull("no numerical PMFM with a precision has been found. Could not define a PMFM for batch frequencies.", frequencyPMFM); + } + + @Test + public void createAndSaveCatchBatch() throws Exception { + CatchBatch catchBatch; + + catchBatch = new CatchBatch(); + catchBatch.setFishingOperation(fishingOperationNoCatchBatch); + + // ----------------------------------------------------------------------------- + // 1. Test with only mandatory properties + // ----------------------------------------------------------------------------- + + // Create and reload (test round trip) + assertCreateAndReloadCatchBatch(catchBatch, fishingOperationNoCatchBatch.getId()); + + // ----------------------------------------------------------------------------- + // 2. Test with all properties + // ----------------------------------------------------------------------------- + catchBatch.setId((String) null); + // total weight : 100kg + catchBatch.setCatchTotalWeight(75f); + // Vrac : + { + // note : poids trie par la balance tremis (thalassa) (init par pupitri) + catchBatch.setCatchTotalSortedTremisWeight(50f); + // note : poids vrac caroussel (thalassa) (init par pupitri) (vrac trie) ou bien "poids trié fournie par la + // table de tri (Sum(Si) + catchBatch.setCatchTotalSortedCarousselWeight(45f); + + // Species + { + catchBatch.setSpeciesTotalSortedWeight(12f); + catchBatch.setSpeciesTotalSampleSortedWeight(8f); + catchBatch.setSpeciesTotalLivingNotItemizedWeight(0.2f); + catchBatch.setSpeciesTotalInertWeight(0.1f); + } + + // Benthos + { + catchBatch.setBenthosTotalSortedWeight(24f); + catchBatch.setBenthosTotalSampleSortedWeight(16f); + catchBatch.setBenthosTotalLivingNotItemizedWeight(0.4f); + catchBatch.setBenthosTotalInertWeight(0.2f); + } + } + // Hors Vrac : 10kg + { + catchBatch.setCatchTotalUnsortedWeight(10f); + + // Species + { + catchBatch.setSpeciesTotalUnsortedWeight(10f); + } + // Benthos + { + catchBatch.setBenthosTotalUnsortedWeight(20f); + } + } + // Rejet : 15kg + catchBatch.setCatchTotalRejectedWeight(15f); + + // Create and reload (test round trip) + assertCreateAndReloadCatchBatch(catchBatch, fishingOperationNoCatchBatch.getId()); + + // ----------------------------------------------------------------------------- + // 2. Test save after modification + // ----------------------------------------------------------------------------- + catchBatch.setCatchTotalSortedTremisWeight(null); + catchBatch.setCatchTotalSortedCarousselWeight(null); + catchBatch.setSpeciesTotalSortedWeight(null); + catchBatch.setSpeciesTotalSampleSortedWeight(null); + catchBatch.setCatchTotalUnsortedWeight(null); + catchBatch.setSpeciesTotalUnsortedWeight(null); + + assertSaveAndReloadCatchBatch(catchBatch, fishingOperationNoCatchBatch.getId()); + } + + protected void assertCreateAndReloadCatchBatch(CatchBatch catchBatch, String fishingOperationId) { + CatchBatch createdCatchBatch = service.createCatchBatch(catchBatch); + assertNotNull(createdCatchBatch); + assertNotNull(createdCatchBatch.getId()); + assertCatchBatch(catchBatch, createdCatchBatch, false); + + CatchBatch reloadedCatchBatch = null; + try { + reloadedCatchBatch = service.getCatchBatchFromFishingOperation(fishingOperationId); + } catch (CatchBatchValidationException e) { + Assert.fail(e.getMessage()); + } + assertCatchBatch(createdCatchBatch, reloadedCatchBatch, true); + + catchBatch.setId(createdCatchBatch.getId()); + } + + protected void assertSaveAndReloadCatchBatch(CatchBatch catchBatch, String fishingOperationId) { + CatchBatch savedCatchBatch = service.saveCatchBatch(catchBatch); + assertNotNull(savedCatchBatch); + assertNotNull(savedCatchBatch.getId()); + assertCatchBatch(catchBatch, savedCatchBatch, false); + + CatchBatch reloadedCatchBatch = null; + try { + reloadedCatchBatch = service.getCatchBatchFromFishingOperation(fishingOperationId); + } catch (CatchBatchValidationException e) { + Assert.fail(e.getMessage()); + } + assertCatchBatch(savedCatchBatch, reloadedCatchBatch, true); + } + + protected void assertCatchBatch(CatchBatch expectedCatchBatch, CatchBatch actualCatchBatch, boolean assertIdEquals) { + if (expectedCatchBatch == null) { + assertNull(actualCatchBatch); + return; + } + + assertNotNull(actualCatchBatch); + if (assertIdEquals) { + assertEquals(expectedCatchBatch.getId(), actualCatchBatch.getId()); + } + assertEquals(expectedCatchBatch.getCatchTotalWeight(), actualCatchBatch.getCatchTotalWeight()); + assertEquals(expectedCatchBatch.getCatchTotalSortedCarousselWeight(), actualCatchBatch.getCatchTotalSortedCarousselWeight()); + assertEquals(expectedCatchBatch.getCatchTotalSortedTremisWeight(), actualCatchBatch.getCatchTotalSortedTremisWeight()); + assertEquals(expectedCatchBatch.getCatchTotalUnsortedWeight(), actualCatchBatch.getCatchTotalUnsortedWeight()); + + assertEquals(expectedCatchBatch.getSpeciesTotalSampleSortedWeight(), actualCatchBatch.getSpeciesTotalSampleSortedWeight()); + assertEquals(expectedCatchBatch.getSpeciesTotalSortedWeight(), actualCatchBatch.getSpeciesTotalSortedWeight()); + assertEquals(expectedCatchBatch.getSpeciesTotalUnsortedWeight(), actualCatchBatch.getSpeciesTotalUnsortedWeight()); + assertEquals(expectedCatchBatch.getSpeciesTotalInertWeight(), actualCatchBatch.getSpeciesTotalInertWeight()); + assertEquals(expectedCatchBatch.getSpeciesTotalLivingNotItemizedWeight(), actualCatchBatch.getSpeciesTotalLivingNotItemizedWeight()); + + assertEquals(expectedCatchBatch.getBenthosTotalSampleSortedWeight(), actualCatchBatch.getBenthosTotalSampleSortedWeight()); + assertEquals(expectedCatchBatch.getBenthosTotalSortedWeight(), actualCatchBatch.getBenthosTotalSortedWeight()); + assertEquals(expectedCatchBatch.getBenthosTotalUnsortedWeight(), actualCatchBatch.getBenthosTotalUnsortedWeight()); + assertEquals(expectedCatchBatch.getBenthosTotalInertWeight(), actualCatchBatch.getBenthosTotalInertWeight()); + assertEquals(expectedCatchBatch.getBenthosTotalLivingNotItemizedWeight(), actualCatchBatch.getBenthosTotalLivingNotItemizedWeight()); + } +} Modified: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/CruisePersistenceServiceWriteTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/CruisePersistenceServiceWriteTest.java 2013-03-27 21:44:37 UTC (rev 692) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/CruisePersistenceServiceWriteTest.java 2013-03-27 21:49:05 UTC (rev 693) @@ -82,7 +82,7 @@ // ----------------------------------------------------------------------------- // 1. Test with all properties filled // ----------------------------------------------------------------------------- - cruise.setId(null); + cruise.setId((String)null); cruise.setName("Unit-test-" + System.currentTimeMillis()); @@ -148,7 +148,7 @@ // ----------------------------------------------------------------------------- // 2. Test with only mandatory properties // ----------------------------------------------------------------------------- - createdCruise.setId(null); + createdCruise.setId((String)null); createdCruise.setHeadOfMission(null); // createdCruise.setBeginDate(cruise.getBeginDate()); // createdCruise.setEndDate(cruise.getEndDate()); @@ -203,7 +203,7 @@ // ----------------------------------------------------------------------------- Cruise cruise = service.getCruise(dbResource.getFixtures().cruiseId()); - cruise.setId(null); + cruise.setId((String)null); Calendar calendar = new GregorianCalendar(); cruise.setBeginDate(calendar.getTime()); Modified: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/FishingOperationPersistenceServiceWriteTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/FishingOperationPersistenceServiceWriteTest.java 2013-03-27 21:44:37 UTC (rev 692) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/FishingOperationPersistenceServiceWriteTest.java 2013-03-27 21:49:05 UTC (rev 693) @@ -87,7 +87,7 @@ // Duplicate an existing cruise, to attach new fishing operations cruise = cruiseService.getCruise(dbResource.getFixtures().cruiseId()); - cruise.setId(null); + cruise.setId((String)null); cruise.setName("Unit-test-" + System.currentTimeMillis()); Calendar calendar = new GregorianCalendar(); cruise.setBeginDate(calendar.getTime()); @@ -206,7 +206,7 @@ // 2. Test with all properties set // ----------------------------------------------------------------------------- // Set properties - fishingOperation.setId(null); + fishingOperation.setId((String)null); fishingOperation.setStationNumber("STA2"); fishingOperation.setFishingOperationNumber(2); fishingOperation.setMultirigAggregation("1"); @@ -319,7 +319,7 @@ // - try to save a operation using a gear not declared in the cruise // - try to save a operation using a multirig aggregation greater than the cruise multirig number // ----------------------------------------------------------------------------- - fishingOperation.setId(null); + fishingOperation.setId((String)null); // Find and set a gear not used in the cruise List<Gear> gears = referentialService.getAllFishingGear(); Copied: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceReadTest.java (from rev 684, trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceReadTest.java) =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceReadTest.java (rev 0) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceReadTest.java 2013-03-27 21:49:05 UTC (rev 693) @@ -0,0 +1,193 @@ +package fr.ifremer.tutti.persistence.service; + +/* + * #%L + * Tutti :: Persistence API + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import com.google.common.collect.Maps; +import fr.ifremer.tutti.persistence.DatabaseResource; +import fr.ifremer.tutti.persistence.entities.data.BatchContainer; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.SampleCategoryEnum; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; +import org.junit.Before; +import org.junit.ClassRule; +import org.junit.Ignore; +import org.junit.Test; + +import java.util.List; +import java.util.Map; + +import static org.junit.Assert.assertEquals; +import static org.junit.Assert.assertFalse; +import static org.junit.Assert.assertNotNull; +import static org.junit.Assert.assertTrue; + +/** + * To test {@link SpeciesBatchPersistenceService} for read operation. + * + * @author tchemit <chemit(a)codelutin.com> + * @since 1.0 + */ +@Ignore +public class SpeciesBatchPersistenceServiceReadTest { + + @ClassRule + public static final DatabaseResource dbResource = DatabaseResource.writeDb(); + + protected SpeciesBatchPersistenceService service; + + protected FishingOperationPersistenceService fishingOperationService; + + protected FishingOperation fishingOperation; + + @Before + public void setUp() throws Exception { + service = TuttiPersistenceServiceLocator.getSpeciesBatchPersistenceService(); + fishingOperationService = TuttiPersistenceServiceLocator.getFishingOperationPersistenceService(); + + List<FishingOperation> fishingOperations = fishingOperationService.getAllFishingOperation(dbResource.getFixtures().cruiseId()); + assertNotNull(fishingOperations); + assertTrue(fishingOperations.size() > 0); + fishingOperation = fishingOperations.get(0); + assertNotNull(fishingOperation); + assertNotNull(fishingOperation.getId()); + } + + @Ignore + @Test + public void getRootSpeciesBatch(/*String fishingOperationId*/) { + //TODO Do me! + service.getRootSpeciesBatch(fishingOperation.getId()); + } + + @Ignore + @Test + public void getAllSpeciesBatchFrequency(/*String speciesBatchId*/) { + //TODO Do me! + } + + @Ignore + @Test + public void getRootBenthosBatch(/*String fishingOperationId*/) { + //TODO Do me! + } + + + public static void assertSpeciesBatch(SpeciesBatch expectedBatch, + SpeciesBatch actualBatch, + boolean assertIdEquals) { + assertNotNull(actualBatch); + assertNotNull(actualBatch.getId()); + if (assertIdEquals && expectedBatch.getId() != null) { + assertEquals(expectedBatch.getId(), actualBatch.getId()); + } + assertEquals(expectedBatch.getWeight(), actualBatch.getWeight()); + assertEquals(expectedBatch.getSampleCategoryType(), actualBatch.getSampleCategoryType()); + if (expectedBatch.getSampleCategoryValue() != null && expectedBatch.getSampleCategoryValue() instanceof CaracteristicQualitativeValue) { + assertNotNull("Bad sampleCategoryValue : expected <" + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId() + "> but was <null>", + actualBatch.getSampleCategoryValue()); + assertEquals( + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId(), + ((CaracteristicQualitativeValue) actualBatch.getSampleCategoryValue()).getId()); + } else { + assertEquals(expectedBatch.getSampleCategoryValue(), actualBatch.getSampleCategoryValue()); + } + assertEquals(expectedBatch.getSampleCategoryWeight(), actualBatch.getSampleCategoryWeight()); + assertEquals(expectedBatch.getNumber(), actualBatch.getNumber()); + assertEquals(expectedBatch.getComment(), actualBatch.getComment()); + + // Check species only if Vrac/HorsVrac or if batch has been load throw getAllxxx method + // (Because getSpeciesBatch(id) could not always retrieve the species) + if (expectedBatch.getSpecies() != null && ( + expectedBatch.getSampleCategoryType() == SampleCategoryEnum.sortedUnsorted + || actualBatch.getSpecies() != null)) { + assertNotNull(actualBatch.getSpecies()); + assertEquals(expectedBatch.getSpecies().getId(), actualBatch.getSpecies().getId()); + } + } + + public static void assertBatchFrequencies(List<SpeciesBatchFrequency> expectedFrequencies, + List<SpeciesBatchFrequency> actualFrequencies, + boolean assertIdEquals) { + assertNotNull(actualFrequencies); + assertEquals(expectedFrequencies.size(), actualFrequencies.size()); + + // Store actual batches into a map, using the length as key + Map<Float, SpeciesBatchFrequency> expectedLengthMap = Maps.newHashMap(); + for (SpeciesBatchFrequency speciesBatchFrequency : expectedFrequencies) { + expectedLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); + } + + // Store expected batches into a map, using the length as key + Map<Float, SpeciesBatchFrequency> actualLengthMap = Maps.newHashMap(); + for (SpeciesBatchFrequency speciesBatchFrequency : actualFrequencies) { + assertFalse("Duplicate lengthStep found in batchFrequencies, for length=" + speciesBatchFrequency.getLengthStep(), actualLengthMap.containsKey(speciesBatchFrequency.getLengthStep())); + actualLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); + assertNotNull(speciesBatchFrequency.getId()); + } + + for (Float lengthStep : expectedLengthMap.keySet()) { + SpeciesBatchFrequency expectedBatchFrequency = expectedLengthMap.get(lengthStep); + SpeciesBatchFrequency actualBatchFrequency = actualLengthMap.get(lengthStep); + if (assertIdEquals) { + assertEquals(expectedBatchFrequency.getId(), actualBatchFrequency.getId()); + } + assertNotNull(expectedBatchFrequency.getLengthStepCaracteristic()); + assertEquals(expectedBatchFrequency.getLengthStepCaracteristic().getId(), actualBatchFrequency.getLengthStepCaracteristic().getId()); + assertEquals(expectedBatchFrequency.getNumber(), actualBatchFrequency.getNumber()); + assertEquals(expectedBatchFrequency.getWeight(), actualBatchFrequency.getWeight()); + assertEquals(expectedBatchFrequency.getComment(), actualBatchFrequency.getComment()); + //assertNotNull(expectedBatchFrequency.getBatch()); + //assertEquals(expectedBatchFrequency.getBatch().getId(), actualBatchFrequency.getBatch().getId()); + } + } + + public SpeciesBatch getSpeciesBatch(String fishingOperationId, + String speciesBatchId) { + BatchContainer<SpeciesBatch> rootSpeciesBatch = service.getRootSpeciesBatch(fishingOperationId); + return getSpeciesBatch(speciesBatchId, rootSpeciesBatch.getChildren()); + } + + public static SpeciesBatch getSpeciesBatch(String speciesBatchId, + List<SpeciesBatch> speciesBatchs) { + if (speciesBatchs == null) { + return null; + } + for (SpeciesBatch speciesBatch : speciesBatchs) { + if (speciesBatchId.equals(speciesBatch.getId())) { + return speciesBatch; + } + if (speciesBatch.getChildBatchs() != null) { + speciesBatch = getSpeciesBatch(speciesBatchId, speciesBatch.getChildBatchs()); + if (speciesBatch != null) { + return speciesBatch; + } + } + } + return null; + } + +} Copied: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceWriteTest.java (from rev 684, trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BatchPersistenceServiceWriteTest.java) =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceWriteTest.java (rev 0) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceWriteTest.java 2013-03-27 21:49:05 UTC (rev 693) @@ -0,0 +1,534 @@ +package fr.ifremer.tutti.persistence.service; + +/* + * #%L + * Tutti :: Persistence API + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import com.google.common.collect.Lists; +import com.google.common.collect.Maps; +import fr.ifremer.tutti.persistence.DatabaseResource; +import fr.ifremer.tutti.persistence.entities.data.BatchContainer; +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.SampleCategoryEnum; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicType; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.persistence.entities.referential.TuttiLocation; +import org.junit.Assert; +import org.junit.Before; +import org.junit.ClassRule; +import org.junit.Test; +import org.springframework.dao.DataRetrievalFailureException; + +import java.util.Calendar; +import java.util.Date; +import java.util.GregorianCalendar; +import java.util.List; +import java.util.Map; + +import static org.junit.Assert.assertEquals; +import static org.junit.Assert.assertFalse; +import static org.junit.Assert.assertNotNull; +import static org.junit.Assert.assertNull; +import static org.junit.Assert.assertTrue; + +/** + * To test {@link SpeciesBatchPersistenceService} for write operation. + * + * @author tchemit <chemit(a)codelutin.com> + * @since 1.0 + */ +public class SpeciesBatchPersistenceServiceWriteTest { + + @ClassRule + public static final DatabaseResource dbResource = DatabaseResource.writeDb(); + + protected SpeciesBatchPersistenceService service; + + protected CatchBatchPersistenceService catchBatchService; + + protected CruisePersistenceService cruiseService; + + protected FishingOperationPersistenceService fishingOperationService; + + protected ReferentialPersistenceService referentialService; + + /* + * Entities prepared in setUp() : + * */ + protected Cruise cruise; + + protected FishingOperation fishingOperationNoCatchBatch; + + protected FishingOperation fishingOperationWithEmptyBatch; + + protected CatchBatch catchBacth; + + protected List<Species> species; + + protected Caracteristic sortedUnsortedPMFM; + + protected CaracteristicQualitativeValue horsVracQualitativeValue; + + protected CaracteristicQualitativeValue vracQualitativeValue; + + protected Caracteristic maturityPMFM; + + protected CaracteristicQualitativeValue firstMaturityQualitativeValue; + + protected Caracteristic sexPMFM; + + protected CaracteristicQualitativeValue maleQualitativeValue; + + protected CaracteristicQualitativeValue femaleQualitativeValue; + + protected CaracteristicQualitativeValue unkQualitativeValue; + + protected Caracteristic frequencyPMFM; + + @Before + public void setUp() throws Exception { + + service = TuttiPersistenceServiceLocator.getSpeciesBatchPersistenceService(); + cruiseService = TuttiPersistenceServiceLocator.getCruisePersistenceService(); + catchBatchService = TuttiPersistenceServiceLocator.getCatchBatchPersistenceService(); + fishingOperationService = TuttiPersistenceServiceLocator.getFishingOperationPersistenceService(); + referentialService = TuttiPersistenceServiceLocator.getReferentialPersistenceService(); + + species = referentialService.getAllSpecies(); + assertNotNull(species); + assertTrue(species.size() > 2); + + cruise = cruiseService.getCruise(dbResource.getFixtures().cruiseId()); + cruise.setId((String) null); + Calendar calendar = new GregorianCalendar(); + cruise.setBeginDate(calendar.getTime()); + calendar.add(Calendar.MONTH, 1); // add one month + cruise.setEndDate(calendar.getTime()); + List<TuttiLocation> allHarbour = referentialService.getAllHarbour(); + Assert.assertNotNull(allHarbour); + Assert.assertTrue(allHarbour.size() > 1); + cruise.setDepartureLocation(allHarbour.get(0)); + cruise.setReturnLocation(allHarbour.get(1)); + + cruise = cruiseService.createCruise(cruise); + + // Create a first operation, with no cacth batch : to test CatchBatch insert/update : + List<FishingOperation> fishingOperations = fishingOperationService.getAllFishingOperation(dbResource.getFixtures().cruiseId()); + assertNotNull(fishingOperations); + assertTrue(fishingOperations.size() > 0); + fishingOperationNoCatchBatch = fishingOperations.get(0); + fishingOperationNoCatchBatch = fishingOperationService.getFishingOperation(fishingOperationNoCatchBatch.getId()); + fishingOperationNoCatchBatch.setId((String) null); + fishingOperationNoCatchBatch.setCruise(cruise); + calendar.setTime(new Date()); + calendar.set(Calendar.HOUR_OF_DAY, 1); + calendar.set(Calendar.MILLISECOND, 0); + fishingOperationNoCatchBatch.setGearShootingStartDate(calendar.getTime()); + calendar.setTime(new Date()); + calendar.set(Calendar.HOUR_OF_DAY, 10); + calendar.set(Calendar.MILLISECOND, 0); + fishingOperationNoCatchBatch.setGearShootingEndDate(calendar.getTime()); + fishingOperationNoCatchBatch = fishingOperationService.createFishingOperation(fishingOperationNoCatchBatch); + + // Create a second operation, with no cacth batch : to test CatchBatch insert/update : + fishingOperationWithEmptyBatch = fishingOperations.get(1); + fishingOperationWithEmptyBatch = fishingOperationService.getFishingOperation(fishingOperationWithEmptyBatch.getId()); + fishingOperationWithEmptyBatch.setId((String) null); + fishingOperationWithEmptyBatch.setCruise(cruise); + calendar.setTime(new Date()); + calendar.set(Calendar.HOUR_OF_DAY, 11); + calendar.set(Calendar.MILLISECOND, 0); + fishingOperationWithEmptyBatch.setGearShootingStartDate(calendar.getTime()); + calendar.setTime(new Date()); + calendar.set(Calendar.HOUR_OF_DAY, 12); + calendar.set(Calendar.MILLISECOND, 0); + fishingOperationWithEmptyBatch.setGearShootingEndDate(calendar.getTime()); + fishingOperationWithEmptyBatch = fishingOperationService.createFishingOperation(fishingOperationWithEmptyBatch); + + catchBacth = new CatchBatch(); + catchBacth.setFishingOperation(fishingOperationWithEmptyBatch); + catchBacth = catchBatchService.createCatchBatch(catchBacth); + + sortedUnsortedPMFM = referentialService.getSortedUnsortedCaracteristic(); + horsVracQualitativeValue = sortedUnsortedPMFM.getQualitativeValue(0); + vracQualitativeValue = sortedUnsortedPMFM.getQualitativeValue(1); + maturityPMFM = referentialService.getMaturityCaracteristic(); + firstMaturityQualitativeValue = maturityPMFM.getQualitativeValue(0); + sexPMFM = referentialService.getSexCaracteristic(); + maleQualitativeValue = sexPMFM.getQualitativeValue(1); + femaleQualitativeValue = sexPMFM.getQualitativeValue(2); + unkQualitativeValue = sexPMFM.getQualitativeValue(3); + + List<Caracteristic> cara = referentialService.getAllCaracteristic(); + for (Caracteristic caracteristic : cara) { + if (caracteristic.getCaracteristicType() == CaracteristicType.NUMBER + && caracteristic.getPrecision() != null + && caracteristic.getPrecision() == 0.5f) { + frequencyPMFM = caracteristic; + break; + } + } + assertNotNull("no numerical PMFM with a precision has been found. Could not define a PMFM for batch frequencies.", frequencyPMFM); + + } + + @Test + public void createAndSaveSpeciesBatchAndFrequencies() { + SpeciesBatch esp1Batch; + SpeciesBatch esp2Batch; + SpeciesBatch frequenciesParentBatch; + SpeciesBatch batch; + Species taxon1 = species.get(0); + Species taxon2 = species.get(1); + + // ----------------------------------------------------------------------------- + // 1. Test with only mandatory properties + // ----------------------------------------------------------------------------- + // batch : "ESP1 - Vrac/5" + batch = new SpeciesBatch(); + batch.setParentBatch(null); + batch.setFishingOperation(fishingOperationNoCatchBatch); + batch.setSpecies(taxon1); + batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); + batch.setSampleCategoryValue(vracQualitativeValue); + batch.setSampleCategoryWeight(5f); + + assertCreateAndReloadSpeciesBatch(batch, null); + + // Save ESP1 batch + esp1Batch = batch; + + // ----------------------------------------------------------------------------- + // 2. Test child "Male/2" + // ----------------------------------------------------------------------------- + // Batch : ESP1 - Vrac/5 Male/2 ss-ech/1 Nombre/7 + batch = new SpeciesBatch(); + batch.setId((String) null); + batch.setParentBatch(esp1Batch); + batch.setSpecies(taxon1); + batch.setComment("ESP1 - Vrac/5 Male/2 ss-ech/1 Nombre/7"); + batch.setSampleCategoryType(SampleCategoryEnum.sex); + batch.setSampleCategoryValue(maleQualitativeValue); + batch.setSampleCategoryWeight(2f); + batch.setWeight(1f); + batch.setNumber(7); + + assertCreateAndReloadSpeciesBatch(batch, batch.getParentBatch().getId()); + + // ----------------------------------------------------------------------------- + // 3. Test child "Female/2" + // ----------------------------------------------------------------------------- + // Batch : ESP1 - Vrac/5 Female/3 Nombre/14 + batch = new SpeciesBatch(); + batch.setId((String) null); + batch.setParentBatch(esp1Batch); + batch.setSpecies(taxon1); + batch.setComment("ESP1 - Vrac/5 Female/3 Nombre/14"); + batch.setSampleCategoryType(SampleCategoryEnum.sex); + batch.setSampleCategoryValue(femaleQualitativeValue); + batch.setSampleCategoryWeight(3f); + batch.setWeight(null); + batch.setNumber(14); + + assertCreateAndReloadSpeciesBatch(batch, batch.getParentBatch().getId()); + + // ----------------------------------------------------------------------------- + // 4. Test : ESP2 - Vrac/7 + // \- ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11 + // ----------------------------------------------------------------------------- + // batch : "ESP2 - Vrac/7 " + batch = new SpeciesBatch(); + batch.setParentBatch(null); + batch.setSpecies(taxon2); + batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); + batch.setSampleCategoryValue(vracQualitativeValue); + batch.setSampleCategoryWeight(7f); + + assertCreateAndReloadSpeciesBatch(batch, null); + esp2Batch = batch; + + // Batch : ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11 + batch = new SpeciesBatch(); + batch.setId((String) null); + batch.setParentBatch(esp2Batch); + batch.setSpecies(taxon2); + batch.setComment("ESP2 - Vrac/7 UNK/2 ss-ech/1 Nombre/11"); + batch.setSampleCategoryType(SampleCategoryEnum.maturity); + batch.setSampleCategoryValue(firstMaturityQualitativeValue); + batch.setSampleCategoryWeight(2f); + batch.setWeight(1f); + batch.setNumber(11); + + assertCreateAndReloadSpeciesBatch(batch, batch.getParentBatch().getId()); + + // ----------------------------------------------------------------------------- + // 5. Test save after modifications + // ----------------------------------------------------------------------------- + // Batch : ESP2 - Vrac/7 UNK/1.75 ss-ech/1.11 Nombre/99 + batch.setComment("ESP2 - Vrac/7 UNK/1.75 ss-ech/1.11 Nombre/99"); + batch.setSampleCategoryType(SampleCategoryEnum.sex); + batch.setSampleCategoryValue(unkQualitativeValue); + batch.setSampleCategoryWeight(1.75f); + batch.setWeight(1.11f); + batch.setFishingOperation(fishingOperationWithEmptyBatch); + batch.setNumber(99); + + // Save and reload, then check + SpeciesBatch savedBatch = service.saveSpeciesBatch(batch); + assertSpeciesBatch(savedBatch, batch, false); + SpeciesBatch reloadedBatch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), savedBatch.getId()); + assertSpeciesBatch(savedBatch, reloadedBatch, true); + + // Save batch for later + frequenciesParentBatch = batch; + + // ----------------------------------------------------------------------------- + // 6. Test change species + // ----------------------------------------------------------------------------- + esp2Batch.setSpecies(taxon1); + service.changeSpeciesBatchSpecies(esp2Batch.getId(), taxon1); + assertSpeciesBatch(savedBatch, batch, false); + reloadedBatch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), esp2Batch.getId()); + assertSpeciesBatch(esp2Batch, reloadedBatch, true); + + // ----------------------------------------------------------------------------- + // 7. Test get all root species + // ----------------------------------------------------------------------------- + BatchContainer<SpeciesBatch> rootSpeciesBatc = service.getRootSpeciesBatch(fishingOperationWithEmptyBatch.getId()); + List<SpeciesBatch> rootSpeciesBatch = rootSpeciesBatc.getChildren(); + assertNotNull(rootSpeciesBatch); + assertEquals(2, rootSpeciesBatch.size()); + assertNotNull(rootSpeciesBatch.get(0).getChildBatchs()); + assertTrue(rootSpeciesBatch.get(0).getChildBatchs().size() > 0); + assertNotNull(rootSpeciesBatch.get(1).getChildBatchs()); + assertTrue(rootSpeciesBatch.get(1).getChildBatchs().size() > 0); + + // ----------------------------------------------------------------------------- + // 8. Test batch frequency creation + // ----------------------------------------------------------------------------- + + List<SpeciesBatchFrequency> frequencies = Lists.newArrayList(); + float lengthStep = 0.5f; + for (float length = lengthStep; length < lengthStep * 20; length += lengthStep) { + SpeciesBatchFrequency frequency = new SpeciesBatchFrequency(); + frequency.setLengthStep(length); + frequency.setNumber((int) (length * 2)); + frequency.setWeight(0.01f * length * 2); + frequency.setLengthStepCaracteristic(frequencyPMFM); + frequency.setBatch(frequenciesParentBatch); + frequency.setComment("comments"); + frequencies.add(frequency); + } + List<SpeciesBatchFrequency> createdFrequencies = assertCreateAndReloadSpeciesBatchFrequency(frequencies, frequenciesParentBatch.getId()); + + // ----------------------------------------------------------------------------- + // 9. Test batch frequency update + // ----------------------------------------------------------------------------- + // Update some batchs (1cm, 2cm, etc) + for (SpeciesBatchFrequency speciesBatchFrequency : createdFrequencies) { + float length = speciesBatchFrequency.getLengthStep(); + if ((float) (int) length == length) { + speciesBatchFrequency.setNumber(12); + speciesBatchFrequency.setComment(null); + } + } + // And remove the last item (should be deleted in DB) + // Note: use a new list (everything list coming from service are not modifiable) + createdFrequencies = Lists.newArrayList(createdFrequencies); + createdFrequencies.remove(createdFrequencies.size() - 1); + + List<SpeciesBatchFrequency> savedFrequencies = service.saveSpeciesBatchFrequency(frequenciesParentBatch.getId(), createdFrequencies); + assertBatchFrequencies(createdFrequencies, savedFrequencies, true); + } + + @Test + public void deleteSpeciesBatch(/* String id */) { + SpeciesBatch esp1Batch; + SpeciesBatch batch; + Species taxon1 = species.get(0); + + // ----------------------------------------------------------------------------- + // 1. Create two batchs (parent + child), then remove the parent batch + // ----------------------------------------------------------------------------- + // batch : ESP1 Vrac/5 + batch = new SpeciesBatch(); + batch.setParentBatch(null); + batch.setFishingOperation(fishingOperationWithEmptyBatch); + batch.setSpecies(taxon1); + batch.setSampleCategoryType(SampleCategoryEnum.sortedUnsorted); + batch.setSampleCategoryValue(vracQualitativeValue); + batch.setSampleCategoryWeight(5f); + assertCreateAndReloadSpeciesBatch(batch, null); + esp1Batch = batch; + + // batch : ESP1 Vrac/5 Male/2 + batch = new SpeciesBatch(); + batch.setParentBatch(esp1Batch); + batch.setFishingOperation(fishingOperationWithEmptyBatch); + batch.setSpecies(taxon1); + batch.setSampleCategoryType(SampleCategoryEnum.sex); + batch.setSampleCategoryValue(maleQualitativeValue); + batch.setSampleCategoryWeight(2f); + assertCreateAndReloadSpeciesBatch(batch, esp1Batch.getId()); + + // Try to remove + service.deleteSpeciesBatch(esp1Batch.getId()); + + // Check if remove + try { + batch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), esp1Batch.getId()); + assertNull(batch); + } catch (DataRetrievalFailureException drfe) { + assertNotNull(drfe); + } + } + + protected void assertCreateAndReloadSpeciesBatch(SpeciesBatch batch, String parentBatchId) { + batch.setFishingOperation(fishingOperationWithEmptyBatch); + + // Create batch + SpeciesBatch createdBatch = service.createSpeciesBatch(batch, parentBatchId); + assertSpeciesBatch(batch, createdBatch, false); + + // then reload (for round trip check) + SpeciesBatch reloadedBatch = getSpeciesBatch(fishingOperationWithEmptyBatch.getId(), createdBatch.getId()); + if (parentBatchId == null) { + assertNull(reloadedBatch.getParentBatch()); + } else { + assertNotNull(reloadedBatch.getParentBatch()); + assertEquals(parentBatchId, reloadedBatch.getParentBatch().getId()); + } + assertSpeciesBatch(createdBatch, reloadedBatch, false); + + batch.setId(createdBatch.getId()); + } + + protected void assertSpeciesBatch(SpeciesBatch expectedBatch, SpeciesBatch actualBatch, boolean assertIdEquals) { + assertNotNull(actualBatch); + assertNotNull(actualBatch.getId()); + if (assertIdEquals && expectedBatch.getId() != null) { + assertEquals(expectedBatch.getId(), actualBatch.getId()); + } + assertEquals(expectedBatch.getWeight(), actualBatch.getWeight()); + assertEquals(expectedBatch.getSampleCategoryType(), actualBatch.getSampleCategoryType()); + if (expectedBatch.getSampleCategoryValue() != null && expectedBatch.getSampleCategoryValue() instanceof CaracteristicQualitativeValue) { + assertNotNull("Bad sampleCategoryValue : expected <" + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId() + + "> but was <null>", + actualBatch.getSampleCategoryValue()); + assertEquals( + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId(), + ((CaracteristicQualitativeValue) actualBatch.getSampleCategoryValue()).getId()); + } else { + assertEquals(expectedBatch.getSampleCategoryValue(), actualBatch.getSampleCategoryValue()); + } + assertEquals(expectedBatch.getSampleCategoryWeight(), actualBatch.getSampleCategoryWeight()); + assertEquals(expectedBatch.getNumber(), actualBatch.getNumber()); + assertEquals(expectedBatch.getComment(), actualBatch.getComment()); + + // Check species only if Vrac/HorsVrac or if batch has been load throw getAllxxx method + // (Because getSpeciesBatch(id) could not always retrieve the species) + if (expectedBatch.getSpecies() != null && ( + expectedBatch.getSampleCategoryType() == SampleCategoryEnum.sortedUnsorted + || actualBatch.getSpecies() != null)) { + assertNotNull(actualBatch.getSpecies()); + assertEquals(expectedBatch.getSpecies().getId(), actualBatch.getSpecies().getId()); + } + } + + protected List<SpeciesBatchFrequency> assertCreateAndReloadSpeciesBatchFrequency(List<SpeciesBatchFrequency> frequencies, String parentBatchId) { + + // Create batch + List<SpeciesBatchFrequency> createdFrequencies = service.saveSpeciesBatchFrequency(parentBatchId, frequencies); + assertBatchFrequencies(frequencies, createdFrequencies, false); + + // then reload (for round trip check) + List<SpeciesBatchFrequency> reloadedFrequencies = service.getAllSpeciesBatchFrequency(parentBatchId); + assertBatchFrequencies(createdFrequencies, reloadedFrequencies, true); + + return createdFrequencies; + } + + protected void assertBatchFrequencies(List<SpeciesBatchFrequency> expectedFrequencies, List<SpeciesBatchFrequency> actualFrequencies, + boolean assertIdEquals) { + assertNotNull(actualFrequencies); + assertEquals(expectedFrequencies.size(), actualFrequencies.size()); + + // Store actual batches into a map, using the length as key + Map<Float, SpeciesBatchFrequency> expectedLengthMap = Maps.newHashMap(); + for (SpeciesBatchFrequency speciesBatchFrequency : expectedFrequencies) { + expectedLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); + } + + // Store expected batches into a map, using the length as key + Map<Float, SpeciesBatchFrequency> actualLengthMap = Maps.newHashMap(); + for (SpeciesBatchFrequency speciesBatchFrequency : actualFrequencies) { + assertFalse("Duplicate lengthStep found in batchFrequencies, for length=" + speciesBatchFrequency.getLengthStep(), + actualLengthMap.containsKey(speciesBatchFrequency.getLengthStep())); + actualLengthMap.put(speciesBatchFrequency.getLengthStep(), speciesBatchFrequency); + assertNotNull(speciesBatchFrequency.getId()); + } + + for (Float lengthStep : expectedLengthMap.keySet()) { + SpeciesBatchFrequency expectedBatchFrequency = expectedLengthMap.get(lengthStep); + SpeciesBatchFrequency actualBatchFrequency = actualLengthMap.get(lengthStep); + if (assertIdEquals) { + assertEquals(expectedBatchFrequency.getId(), actualBatchFrequency.getId()); + } + assertNotNull(expectedBatchFrequency.getLengthStepCaracteristic()); + assertEquals(expectedBatchFrequency.getLengthStepCaracteristic().getId(), actualBatchFrequency.getLengthStepCaracteristic().getId()); + assertEquals(expectedBatchFrequency.getNumber(), actualBatchFrequency.getNumber()); + assertEquals(expectedBatchFrequency.getWeight(), actualBatchFrequency.getWeight()); + assertEquals(expectedBatchFrequency.getComment(), actualBatchFrequency.getComment()); + // assertNotNull(expectedBatchFrequency.getBatch()); + // assertEquals(expectedBatchFrequency.getBatch().getId(), actualBatchFrequency.getBatch().getId()); + } + } + + protected SpeciesBatch getSpeciesBatch(String fishingOperationId, String speciesBatchId) { + return getSpeciesBatch(speciesBatchId, service.getRootSpeciesBatch(fishingOperationId).getChildren()); + } + + protected SpeciesBatch getSpeciesBatch(String speciesBatchId, List<SpeciesBatch> speciesBatchs) { + if (speciesBatchs == null) { + return null; + } + for (SpeciesBatch speciesBatch : speciesBatchs) { + if (speciesBatchId.equals(speciesBatch.getId())) { + return speciesBatch; + } + if (speciesBatch.getChildBatchs() != null) { + speciesBatch = getSpeciesBatch(speciesBatchId, speciesBatch.getChildBatchs()); + if (speciesBatch != null) { + return speciesBatch; + } + } + } + return null; + } +} Modified: trunk/tutti-persistence/src/test/resources/log4j.properties =================================================================== --- trunk/tutti-persistence/src/test/resources/log4j.properties 2013-03-27 21:44:37 UTC (rev 692) +++ trunk/tutti-persistence/src/test/resources/log4j.properties 2013-03-27 21:49:05 UTC (rev 693) @@ -37,6 +37,6 @@ #log4j.logger.net.sf.ehcache=WARN -log4j.logger.fr.ifremer.adagio.core=DEBUG +log4j.logger.fr.ifremer.adagio.core=ERROR log4j.logger.fr.ifremer.tutti=INFO #log4j.logger.org.nuiton=INFO

1 0

r692 - in trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing: content/operation/catches content/operation/catches/benthos content/operation/catches/species util
by tchemit＠users.forge.codelutin.com March 27, 2013

March 27, 2013

Author: tchemit Date: 2013-03-27 22:44:37 +0100 (Wed, 27 Mar 2013) New Revision: 692 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/692 Log: fixes #2224: [CAPUTRE] Donn?\195?\169es non sauvegard?\195?\169es Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/EditCatchesUI.css trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/EditCatchesUIHandler.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/EditCatchesUIModel.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/benthos/BenthosBatchRowModel.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/SpeciesBatchRowModel.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/AbstractTuttiBeanUIModel.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/TuttiComputedOrNotData.java Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/EditCatchesUI.css =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/EditCatchesUI.css 2013-03-27 19:09:49 UTC (rev 691) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/EditCatchesUI.css 2013-03-27 21:44:37 UTC (rev 692) @@ -317,6 +317,7 @@ text: "tutti.editCatchBatch.action.saveCatchBatch"; toolTipText: "tutti.editCatchBatch.action.saveCatchBatch.tip"; i18nMnemonic: "tutti.editCatchBatch.action.saveCatchBatch.mnemonic"; + enabled: {model.isModify()}; _tuttiAction: {SaveCatchBatchAction.class}; _help: {"tutti.editCatchBatch.action.saveCatchBatch.help"}; } Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/EditCatchesUIHandler.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/EditCatchesUIHandler.java 2013-03-27 19:09:49 UTC (rev 691) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/EditCatchesUIHandler.java 2013-03-27 21:44:37 UTC (rev 692) @@ -87,7 +87,11 @@ this.parentUi = parentUi; this.catchBatchMonitor = new TuttiBeanMonitor<EditCatchesUIModel>( EditCatchesUIModel.PROPERTY_SPECIES_TOTAL_SORTED_WEIGHT, - EditCatchesUIModel.PROPERTY_BENTHOS_TOTAL_SORTED_WEIGHT); + EditCatchesUIModel.PROPERTY_SPECIES_TOTAL_INERT_WEIGHT, + EditCatchesUIModel.PROPERTY_SPECIES_TOTAL_LIVING_NOT_ITEMIZED_WEIGHT, + EditCatchesUIModel.PROPERTY_BENTHOS_TOTAL_SORTED_WEIGHT, + EditCatchesUIModel.PROPERTY_BENTHOS_TOTAL_INERT_WEIGHT, + EditCatchesUIModel.PROPERTY_BENTHOS_TOTAL_LIVING_NOT_ITEMIZED_WEIGHT); } //------------------------------------------------------------------------// Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/EditCatchesUIModel.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/EditCatchesUIModel.java 2013-03-27 19:09:49 UTC (rev 691) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/EditCatchesUIModel.java 2013-03-27 21:44:37 UTC (rev 692) @@ -41,8 +41,6 @@ import org.nuiton.util.beans.Binder; import org.nuiton.util.beans.BinderFactory; -import java.beans.PropertyChangeEvent; -import java.beans.PropertyChangeListener; import java.util.Collection; import java.util.List; @@ -182,43 +180,24 @@ public EditCatchesUIModel() { super(CatchBatch.class, fromBeanBinder, toBeanBinder); - speciesTotalSortedComputedOrNotWeight.addPropertyChangeListener( - TuttiComputedOrNotData.PROPERTY_DATA, - new PropertyChangeListener() { + speciesTotalSortedComputedOrNotWeight.addPropagateListener( + PROPERTY_SPECIES_TOTAL_SORTED_WEIGHT, this); + speciesTotalInertComputedOrNotWeight.addPropagateListener( + PROPERTY_SPECIES_TOTAL_INERT_WEIGHT, this); + speciesTotalLivingNotItemizedComputedOrNotWeight.addPropagateListener( + PROPERTY_SPECIES_TOTAL_LIVING_NOT_ITEMIZED_WEIGHT, this); - public void propertyChange(PropertyChangeEvent evt) { - firePropertyChange(PROPERTY_SPECIES_TOTAL_SORTED_WEIGHT, - evt.getOldValue(), evt.getNewValue()); - } - }); - benthosTotalSortedComputedOrNotWeight.addPropertyChangeListener( - TuttiComputedOrNotData.PROPERTY_DATA, - new PropertyChangeListener() { + benthosTotalSortedComputedOrNotWeight.addPropagateListener( + PROPERTY_BENTHOS_TOTAL_SORTED_WEIGHT, this); + benthosTotalInertComputedOrNotWeight.addPropagateListener( + PROPERTY_BENTHOS_TOTAL_INERT_WEIGHT, this); + benthosTotalLivingNotItemizedComputedOrNotWeight.addPropagateListener( + PROPERTY_BENTHOS_TOTAL_LIVING_NOT_ITEMIZED_WEIGHT, this); - public void propertyChange(PropertyChangeEvent evt) { - firePropertyChange(PROPERTY_BENTHOS_TOTAL_SORTED_WEIGHT, - evt.getOldValue(), evt.getNewValue()); - } - }); - - catchTotalComputedOrNotWeight.addPropertyChangeListener( - TuttiComputedOrNotData.PROPERTY_DATA, - new PropertyChangeListener() { - - public void propertyChange(PropertyChangeEvent evt) { - firePropertyChange(PROPERTY_CATCH_TOTAL_WEIGHT, - evt.getOldValue(), evt.getNewValue()); - } - }); - catchTotalRejectedComputedOrNotWeight.addPropertyChangeListener( - TuttiComputedOrNotData.PROPERTY_DATA, - new PropertyChangeListener() { - - public void propertyChange(PropertyChangeEvent evt) { - firePropertyChange(PROPERTY_CATCH_TOTAL_COMPUTED_WEIGHT, - evt.getOldValue(), evt.getNewValue()); - } - }); + catchTotalComputedOrNotWeight.addPropagateListener( + PROPERTY_CATCH_TOTAL_WEIGHT, this); + catchTotalRejectedComputedOrNotWeight.addPropagateListener( + PROPERTY_CATCH_TOTAL_REJECTED_WEIGHT, this); } @Override Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/benthos/BenthosBatchRowModel.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/benthos/BenthosBatchRowModel.java 2013-03-27 19:09:49 UTC (rev 691) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/benthos/BenthosBatchRowModel.java 2013-03-27 21:44:37 UTC (rev 692) @@ -42,8 +42,6 @@ import org.nuiton.util.beans.Binder; import org.nuiton.util.beans.BinderFactory; -import java.beans.PropertyChangeEvent; -import java.beans.PropertyChangeListener; import java.util.Collection; import java.util.Collections; import java.util.List; @@ -242,39 +240,10 @@ maturityCategory = SampleCategory.newSample(SampleCategoryEnum.maturity); ageCategory = SampleCategory.newSample(SampleCategoryEnum.age); - computedOrNotWeight.addPropertyChangeListener( - TuttiComputedOrNotData.PROPERTY_DATA, - new PropertyChangeListener() { - - public void propertyChange(PropertyChangeEvent evt) { - firePropertyChange(PROPERTY_WEIGHT, evt.getOldValue(), evt.getNewValue()); - } - }); - computedOrNotWeight.addPropertyChangeListener( - TuttiComputedOrNotData.PROPERTY_COMPUTED_DATA, - new PropertyChangeListener() { - - public void propertyChange(PropertyChangeEvent evt) { - firePropertyChange(PROPERTY_COMPUTED_WEIGHT, evt.getOldValue(), evt.getNewValue()); - } - }); - - computedOrNotNumber.addPropertyChangeListener( - TuttiComputedOrNotData.PROPERTY_DATA, - new PropertyChangeListener() { - - public void propertyChange(PropertyChangeEvent evt) { - firePropertyChange(PROPERTY_NUMBER, evt.getOldValue(), evt.getNewValue()); - } - }); - computedOrNotNumber.addPropertyChangeListener( - TuttiComputedOrNotData.PROPERTY_COMPUTED_DATA, - new PropertyChangeListener() { - - public void propertyChange(PropertyChangeEvent evt) { - firePropertyChange(PROPERTY_COMPUTED_NUMBER, evt.getOldValue(), evt.getNewValue()); - } - }); + computedOrNotWeight.addPropagateListener(PROPERTY_WEIGHT, this); + computedOrNotWeight.addPropagateListener(PROPERTY_COMPUTED_WEIGHT, this); + computedOrNotNumber.addPropagateListener(PROPERTY_NUMBER, this); + computedOrNotNumber.addPropagateListener(PROPERTY_COMPUTED_NUMBER, this); } public BenthosBatchRowModel(SpeciesBatch aBatch, Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/SpeciesBatchRowModel.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/SpeciesBatchRowModel.java 2013-03-27 19:09:49 UTC (rev 691) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/species/SpeciesBatchRowModel.java 2013-03-27 21:44:37 UTC (rev 692) @@ -42,8 +42,6 @@ import org.nuiton.util.beans.Binder; import org.nuiton.util.beans.BinderFactory; -import java.beans.PropertyChangeEvent; -import java.beans.PropertyChangeListener; import java.util.Collection; import java.util.Collections; import java.util.List; @@ -242,39 +240,10 @@ maturityCategory = SampleCategory.newSample(SampleCategoryEnum.maturity); ageCategory = SampleCategory.newSample(SampleCategoryEnum.age); - computedOrNotWeight.addPropertyChangeListener( - TuttiComputedOrNotData.PROPERTY_DATA, - new PropertyChangeListener() { - - public void propertyChange(PropertyChangeEvent evt) { - firePropertyChange(PROPERTY_WEIGHT, evt.getOldValue(), evt.getNewValue()); - } - }); - computedOrNotWeight.addPropertyChangeListener( - TuttiComputedOrNotData.PROPERTY_COMPUTED_DATA, - new PropertyChangeListener() { - - public void propertyChange(PropertyChangeEvent evt) { - firePropertyChange(PROPERTY_COMPUTED_WEIGHT, evt.getOldValue(), evt.getNewValue()); - } - }); - - computedOrNotNumber.addPropertyChangeListener( - TuttiComputedOrNotData.PROPERTY_DATA, - new PropertyChangeListener() { - - public void propertyChange(PropertyChangeEvent evt) { - firePropertyChange(PROPERTY_NUMBER, evt.getOldValue(), evt.getNewValue()); - } - }); - computedOrNotNumber.addPropertyChangeListener( - TuttiComputedOrNotData.PROPERTY_COMPUTED_DATA, - new PropertyChangeListener() { - - public void propertyChange(PropertyChangeEvent evt) { - firePropertyChange(PROPERTY_COMPUTED_NUMBER, evt.getOldValue(), evt.getNewValue()); - } - }); + computedOrNotWeight.addPropagateListener(PROPERTY_WEIGHT, this); + computedOrNotWeight.addPropagateListener(PROPERTY_COMPUTED_WEIGHT, this); + computedOrNotNumber.addPropagateListener(PROPERTY_NUMBER, this); + computedOrNotNumber.addPropagateListener(PROPERTY_COMPUTED_NUMBER, this); } public SpeciesBatchRowModel(SpeciesBatch aBatch, Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/AbstractTuttiBeanUIModel.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/AbstractTuttiBeanUIModel.java 2013-03-27 19:09:49 UTC (rev 691) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/AbstractTuttiBeanUIModel.java 2013-03-27 21:44:37 UTC (rev 692) @@ -119,4 +119,12 @@ public boolean isCreate() { return id == null; } + + public void firePropertyChanged(String propertyName, + Object oldValue, + Object newValue) { + firePropertyChange(propertyName, oldValue, newValue); + } + + } Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/TuttiComputedOrNotData.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/TuttiComputedOrNotData.java 2013-03-27 19:09:49 UTC (rev 691) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/util/TuttiComputedOrNotData.java 2013-03-27 21:44:37 UTC (rev 692) @@ -1,8 +1,5 @@ - package fr.ifremer.tutti.ui.swing.util; -import org.jdesktop.beans.AbstractSerializableBean; - /* * #%L * Tutti :: UI @@ -13,20 +10,26 @@ * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the + * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. - * + * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public + * + * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-3.0.html>. * #L% */ +import org.jdesktop.beans.AbstractSerializableBean; + +import java.beans.PropertyChangeEvent; +import java.beans.PropertyChangeListener; + + /** @author kmorin <kmorin(a)codelutin.com> */ public class TuttiComputedOrNotData<N extends Number> extends AbstractSerializableBean { @@ -81,4 +84,33 @@ return result; } + /** + * Add a listener to propagate the modification of the + * {@link #PROPERTY_DATA} property to a given {@code propertyName}. + * + * @param propertyName name of the property to fire on given bean + * @param otherBean bean that will fires + * @since 1.2 + */ + public void addPropagateListener(String propertyName, AbstractTuttiBeanUIModel otherBean) { + PropagatePropertyChangeListener listener = new PropagatePropertyChangeListener(propertyName, otherBean); + addPropertyChangeListener(PROPERTY_DATA, listener); + } + + private static class PropagatePropertyChangeListener implements PropertyChangeListener { + + private String propertyName; + + private AbstractTuttiBeanUIModel otherBean; + + public PropagatePropertyChangeListener(String propertyName, AbstractTuttiBeanUIModel otherBean) { + this.propertyName = propertyName; + this.otherBean = otherBean; + } + + @Override + public void propertyChange(PropertyChangeEvent evt) { + otherBean.firePropertyChanged(propertyName, evt.getOldValue(), evt.getNewValue()); + } + } }

1 0

r691 - in trunk/tutti-ui-swing/src/main: java/fr/ifremer/tutti/ui/swing/content resources/i18n
by kmorin＠users.forge.codelutin.com March 27, 2013

March 27, 2013

Author: kmorin Date: 2013-03-27 20:09:49 +0100 (Wed, 27 Mar 2013) New Revision: 691 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/691 Log: refs #1840 [REFERENTIEL] - Gestion des fonctionnalit?\195?\169s administrateur Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/ImportTemporaryReferentialAction.java trunk/tutti-ui-swing/src/main/resources/i18n/tutti-ui-swing_en_GB.properties trunk/tutti-ui-swing/src/main/resources/i18n/tutti-ui-swing_fr_FR.properties Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/ImportTemporaryReferentialAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/ImportTemporaryReferentialAction.java 2013-03-27 18:06:33 UTC (rev 690) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/ImportTemporaryReferentialAction.java 2013-03-27 19:09:49 UTC (rev 691) @@ -25,9 +25,14 @@ */ import fr.ifremer.tutti.ui.swing.TuttiScreen; +import org.apache.commons.lang.StringUtils; +import org.springframework.util.DigestUtils; -import javax.swing.SwingUtilities; +import javax.swing.*; +import java.security.MessageDigest; +import static org.nuiton.i18n.I18n._; + /** * Open screen to import referential * @@ -41,6 +46,27 @@ } @Override + protected boolean prepareAction() throws Exception { + boolean result = super.prepareAction(); + if (result) { + String answer = JOptionPane.showInputDialog(getContext().getActionUI(), + _("tutti.manageTemporaryReferential.passwordDialog.message"), + _("tutti.manageTemporaryReferential.passwordDialog.title"), + JOptionPane.WARNING_MESSAGE); + if (answer != null) { + String cryptedAnswer = DigestUtils.md5DigestAsHex(answer.getBytes()); + String correctAnswer = DigestUtils.md5DigestAsHex("test".getBytes()); + //TODO kmorin 20130327 error message if wrong password + result = StringUtils.equals(cryptedAnswer, correctAnswer); + + } else { + result = false; + } + } + return result; + } + + @Override protected void doAction() throws Exception { super.doAction(); SwingUtilities.invokeLater(new Runnable() { Modified: trunk/tutti-ui-swing/src/main/resources/i18n/tutti-ui-swing_en_GB.properties =================================================================== --- trunk/tutti-ui-swing/src/main/resources/i18n/tutti-ui-swing_en_GB.properties 2013-03-27 18:06:33 UTC (rev 690) +++ trunk/tutti-ui-swing/src/main/resources/i18n/tutti-ui-swing_en_GB.properties 2013-03-27 19:09:49 UTC (rev 691) @@ -856,6 +856,8 @@ tutti.manageTemporaryReferential.field.species.tip= tutti.manageTemporaryReferential.field.vessel= tutti.manageTemporaryReferential.field.vessel.tip= +tutti.manageTemporaryReferential.passwordDialog.message= +tutti.manageTemporaryReferential.passwordDialog.title= tutti.manageTemporaryReferential.title= tutti.manageTemporaryReferential.title.choose.exportTemporaryGearExampleFile= tutti.manageTemporaryReferential.title.choose.exportTemporaryPersonExampleFile= Modified: trunk/tutti-ui-swing/src/main/resources/i18n/tutti-ui-swing_fr_FR.properties =================================================================== --- trunk/tutti-ui-swing/src/main/resources/i18n/tutti-ui-swing_fr_FR.properties 2013-03-27 18:06:33 UTC (rev 690) +++ trunk/tutti-ui-swing/src/main/resources/i18n/tutti-ui-swing_fr_FR.properties 2013-03-27 19:09:49 UTC (rev 691) @@ -860,6 +860,8 @@ tutti.manageTemporaryReferential.field.species.tip= tutti.manageTemporaryReferential.field.vessel=Référentiel Navire tutti.manageTemporaryReferential.field.vessel.tip= +tutti.manageTemporaryReferential.passwordDialog.message=Vous souhaitez entrer dans une partie sensible de l'application.\nVous devez entrer le mot de passe pour entrer. +tutti.manageTemporaryReferential.passwordDialog.title=Zone sensible tutti.manageTemporaryReferential.title=importer des référentiels temporaires tutti.manageTemporaryReferential.title.choose.exportTemporaryGearExampleFile=Exporter un exemple de référentiel Engin tutti.manageTemporaryReferential.title.choose.exportTemporaryPersonExampleFile=Exporter un exemple de référentiel Personne

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